Rw6G019370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0008118
Physical Location & Seq
Forward (+)
38679533 .. 38680546
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G019370.1

Sequence Viewer

Length: 1014 bp
ATGGATAGGGAACAAGATGAGTTGCAGTTTCTTGGTCTCTTTGGCATCTACAAAGAATCATATAAGATTGTATACAAATGGAGAAAAATCTTCAGCCAAATCAGCTTGACCTTGATCCTCCCTTTGAGCTTCATCTTCTTGGCTCACATAGAAGTCTCCGACATCCTCTTCTCCAGGATCCTGCGGAGCGAATATGCCTTGGACGAAACGAGACCATACAGCCCTCTCTACAAGAGAACAAACGACCTCATCACCAAAGAATGGGTAACCTTCTGGCTCTTCAAGGCTGCTTACTTCACTGCCATGCTCATCTTCGGCCTCCTTTCCACCTCCGCCGTGGTATACACCATCGCATGCGTATACACCGCCCGGGAAATCACCTTCCGAAAGATCATGAGCGTCGTCCCAAGGGTCTGGAAGCGCGTGATGATCACCTTCTTGTGCACCTTCCTGGCTTTCTTCCTCTACAACGTAGTGGCAACAGTAGTAGTCGTAATTGTTTGGTTAGCTCTCTTATACAGCACACGCGGAGACGGCCACGTCTTCGTCATAATTGGTATCTTTTTATTGATCTTGTACGCTGTTGGGTTCGTGTACATGACCATAATCTGGCAACTGGCTAGCGTCGTCTCGGTGTTGGAAGAAACGAAAGGGATCAAAGCCATGATCAAGAGCAAGAAGCTACTCAGAGGGAACATGTGGGTGGTCTCAATCATCTTCATCAAGATCATTGCTTTAGCCTACGTTATTCAGTTTTCATTTCAAGCATTGGTTGTGGATGGATGGGTAGTGTTTGGGATAATGGGCAGGATAGGCTTCGGTGTTCTCTTTTTGTTGTTGCTGCTTAAGTTGATTCTGTTTTTGCTGGTCATCCAAACGGTGCTTTATTTCGTCTGCAAATCGTACCACCATGAAAACATTGACAAGTCAGCTCTATCGGATCACCTCGAGGTTATTTATCTGGGAGACTATGTTCCTCTGAAATCTAAGGATGTTCAGCTTGAGCAGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

337

Amino Acids

39.0

Weight (kDa)

9.28

Isoelectric Point (pI)

28.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 539
AbsI CCTCGAGG 1 cut(s) 947
Acc36I ACCTGC 1 cut(s) 997
AccB7I CCANNNNNTGG 2 cut(s) 261, 609
AccI GTMKAC 3 cut(s) 72, 342, 360
AccII CGCG 2 cut(s) 423, 528
AciI CCGC 4 cut(s) 184, 333, 366, 528
AclWI GGATC 5 cut(s) 109, 172, 185, 662, 948
AcoI YGGCCR 1 cut(s) 535
AcuI CTGAAG 1 cut(s) 76
AfaI GTAC 3 cut(s) 578, 596, 905
AfiI CCNNNNNNNGG 2 cut(s) 261, 609
AflII CTTAAG 1 cut(s) 845
AflIII ACRYGT 1 cut(s) 696
AgsI TTSAA 2 cut(s) 283, 764
AjiI CACGTC 1 cut(s) 541
AjnI CCWGG 2 cut(s) 173, 450
AloI GAACNNNNNNTCC 2 cut(s) 957, 989
AluBI AGCT 6 cut(s) 105, 129, 509, 682, 932, 1000
AluI AGCT 6 cut(s) 105, 129, 509, 682, 932, 1000
Alw21I GWGCWC 1 cut(s) 446
Alw26I GTCTC 7 cut(s) 41, 160, 205, 525, 634, 712, 960
Alw44I GTGCAC 1 cut(s) 442
AlwI GGATC 5 cut(s) 109, 172, 185, 662, 948
Ama87I CYCGRG 2 cut(s) 369, 947
AoxI GGCC 2 cut(s) 316, 535
ApaLI GTGCAC 1 cut(s) 442
ApeKI GCWGC 2 cut(s) 287, 841
AspLEI GCGC 1 cut(s) 423
AsuC2I CCSGG 2 cut(s) 370, 371
AsuHPI GGTGA 4 cut(s) 244, 370, 424, 935
AsuNHI GCTAGC 1 cut(s) 620
AvaI CYCGRG 2 cut(s) 369, 947
BaeGI GKGCMC 1 cut(s) 446
BamHI GGATCC 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 535
Bbv12I GWGCWC 1 cut(s) 446
BbvI GCAGC 2 cut(s) 274, 828
BccI CCATC 3 cut(s) 356, 773, 777
BceAI ACGGC 2 cut(s) 320, 550
BciT130I CCWGG 2 cut(s) 175, 452
BclI TGATCA 2 cut(s) 429, 666
BcnI CCSGG 2 cut(s) 370, 371
BcoDI GTCTC 7 cut(s) 41, 160, 205, 525, 634, 712, 960
BfaI CTAG 1 cut(s) 621
BfrI CTTAAG 1 cut(s) 845
BfuAI ACCTGC 1 cut(s) 997
BisI GCNGC 2 cut(s) 288, 842
BlsI GCNGC 2 cut(s) 289, 843
Bme1390I CCNGG 4 cut(s) 175, 370, 371, 452
BmeT110I CYCGRG 2 cut(s) 369, 947
BmgBI CACGTC 1 cut(s) 541
BmiI GGNNCC 1 cut(s) 179
BmrFI CCNGG 4 cut(s) 175, 370, 371, 452
BmsI GCATC 1 cut(s) 54
BmtI GCTAGC 1 cut(s) 624
BpiI GAAGAC 1 cut(s) 535
BpmI CTGGAG 1 cut(s) 157
BpuMI CCSGG 2 cut(s) 370, 371
BsaI GGTCTC 3 cut(s) 41, 205, 712
BsaJI CCNNGG 4 cut(s) 198, 336, 369, 407
BsaXI ACNNNNNCTCC 2 cut(s) 957, 987
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 609
Bse1I ACTGG 1 cut(s) 621
Bse3DI GCAATG 1 cut(s) 729
BseBI CCWGG 2 cut(s) 175, 452
BseDI CCNNGG 4 cut(s) 198, 336, 369, 407
BseGI GGATG 5 cut(s) 162, 784, 788, 870, 997
BseLI CCNNNNNNNGG 2 cut(s) 261, 609
BseMI GCAATG 1 cut(s) 729
BseMII CTCAG 1 cut(s) 700
BseNI ACTGG 1 cut(s) 621
BseSI GKGCMC 1 cut(s) 446
BseXI GCAGC 2 cut(s) 274, 828
Bsh1236I CGCG 2 cut(s) 423, 528
BshFI GGCC 2 cut(s) 318, 537
BsiHKAI GWGCWC 1 cut(s) 446
BsiHKCI CYCGRG 2 cut(s) 369, 947
BsiSI CCGG 1 cut(s) 370
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 2 cut(s) 261, 609
BsmAI GTCTC 7 cut(s) 41, 160, 205, 525, 634, 712, 960
BsmBI CGTCTC 2 cut(s) 525, 634
BsmFI GGGAC 1 cut(s) 389
BsnI GGCC 2 cut(s) 318, 537
Bso31I GGTCTC 3 cut(s) 41, 205, 712
BsoBI CYCGRG 2 cut(s) 369, 947
Bsp1286I GDGCHC 1 cut(s) 446
Bsp1407I TGTACA 1 cut(s) 594
Bsp143I GATC 9 cut(s) 114, 177, 390, 429, 570, 654, 666, 726, 940
BspACI CCGC 4 cut(s) 184, 333, 366, 528
BspANI GGCC 2 cut(s) 318, 537
BspCNI CTCAG 1 cut(s) 699
BspFNI CGCG 2 cut(s) 423, 528
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 1 cut(s) 179
BspMI ACCTGC 1 cut(s) 997
BspOI GCTAGC 1 cut(s) 624
BspPI GGATC 5 cut(s) 109, 172, 185, 662, 948
BspQI GCTCTTC 1 cut(s) 284
BspTI CTTAAG 1 cut(s) 845
BspTNI GGTCTC 3 cut(s) 41, 205, 712
BsrDI GCAATG 1 cut(s) 729
BsrGI TGTACA 1 cut(s) 594
BsrI ACTGG 1 cut(s) 621
BssECI CCNNGG 4 cut(s) 198, 336, 369, 407
BssMI GATC 9 cut(s) 114, 177, 390, 429, 570, 654, 666, 726, 940
BssNAI GTATAC 3 cut(s) 73, 343, 361
BssT1I CCWWGG 2 cut(s) 198, 407
Bst1107I GTATAC 3 cut(s) 73, 343, 361
Bst2UI CCWGG 2 cut(s) 175, 452
Bst4CI ACNGT 2 cut(s) 484, 880
Bst6I CTCTTC 2 cut(s) 173, 284
BstAFI CTTAAG 1 cut(s) 845
BstAUI TGTACA 1 cut(s) 594
BstC8I GCNNGC 2 cut(s) 355, 622
BstDEI CTNAG 2 cut(s) 686, 987
BstDSI CCRYGG 1 cut(s) 336
BstEII GGTNACC 1 cut(s) 265
BstF5I GGATG 5 cut(s) 162, 784, 788, 870, 997
BstFNI CGCG 2 cut(s) 423, 528
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 9 cut(s) 117, 180, 393, 432, 573, 657, 669, 729, 943
BstMAI GTCTC 7 cut(s) 41, 160, 205, 525, 634, 712, 960
BstMBI GATC 9 cut(s) 114, 177, 390, 429, 570, 654, 666, 726, 940
BstMWI GCNNNNNNNGC 3 cut(s) 102, 534, 813
BstNI CCWGG 2 cut(s) 175, 452
BstNSI RCATGY 2 cut(s) 357, 700
BstPI GGTNACC 1 cut(s) 265
BstSCI CCNGG 4 cut(s) 173, 368, 369, 450
BstSLI GKGCMC 1 cut(s) 446
BstUI CGCG 2 cut(s) 423, 528
BstV1I GCAGC 2 cut(s) 274, 828
BstV2I GAAGAC 1 cut(s) 535
BstX2I RGATCY 1 cut(s) 177
BstXI CCANNNNNNTGG 1 cut(s) 414
BstYI RGATCY 1 cut(s) 177
BstZ17I GTATAC 3 cut(s) 73, 343, 361
BsuRI GGCC 2 cut(s) 318, 537
BtgI CCRYGG 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 334
BtrI CACGTC 1 cut(s) 541
BtsCI GGATG 5 cut(s) 162, 784, 788, 870, 997
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 297
BveI ACCTGC 1 cut(s) 997
Cac8I GCNNGC 2 cut(s) 355, 622
CciI TCATGA 1 cut(s) 393
CfoI GCGC 1 cut(s) 423
Cfr9I CCCGGG 1 cut(s) 369
CseI GACGC 2 cut(s) 388, 613
Csp6I GTAC 3 cut(s) 577, 595, 904
CviAII CATG 7 cut(s) 304, 354, 394, 598, 664, 697, 911
CviQI GTAC 3 cut(s) 577, 595, 904
DdeI CTNAG 2 cut(s) 686, 987
DpnI GATC 9 cut(s) 116, 179, 392, 431, 572, 656, 668, 728, 942
DpnII GATC 9 cut(s) 114, 177, 390, 429, 570, 654, 666, 726, 940
DrdI GACNNNNNNGTC 1 cut(s) 539
DseDI GACNNNNNNGTC 1 cut(s) 539
EaeI YGGCCR 1 cut(s) 535
Eam1104I CTCTTC 2 cut(s) 173, 284
EarI CTCTTC 2 cut(s) 173, 284
EciI GGCGGA 1 cut(s) 322
Eco130I CCWWGG 2 cut(s) 198, 407
Eco31I GGTCTC 3 cut(s) 41, 205, 712
Eco57I CTGAAG 1 cut(s) 76
Eco88I CYCGRG 2 cut(s) 369, 947
Eco91I GGTNACC 1 cut(s) 265
EcoO65I GGTNACC 1 cut(s) 265
EcoRII CCWGG 2 cut(s) 173, 450
EcoT14I CCWWGG 2 cut(s) 198, 407
ErhI CCWWGG 2 cut(s) 198, 407
Esp3I CGTCTC 2 cut(s) 525, 634
FaeI CATG 7 cut(s) 307, 357, 397, 601, 667, 700, 914
FaqI GGGAC 1 cut(s) 389
FatI CATG 7 cut(s) 303, 353, 393, 597, 663, 696, 910
FbaI TGATCA 2 cut(s) 429, 666
FblI GTMKAC 3 cut(s) 72, 342, 360
Fnu4HI GCNGC 2 cut(s) 288, 842
FokI GGATG 5 cut(s) 149, 791, 795, 857, 1004
Fsp4HI GCNGC 2 cut(s) 288, 842
FspBI CTAG 1 cut(s) 621
GlaI GCGC 1 cut(s) 422
GluI GCNGC 2 cut(s) 288, 842
GsuI CTGGAG 1 cut(s) 157
HaeIII GGCC 2 cut(s) 318, 537
HapII CCGG 1 cut(s) 370
HgaI GACGC 2 cut(s) 388, 613
HhaI GCGC 1 cut(s) 423
Hin1II CATG 7 cut(s) 307, 357, 397, 601, 667, 700, 914
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HinfI GANTC 2 cut(s) 56, 853
HpaII CCGG 1 cut(s) 370
HphI GGTGA 4 cut(s) 244, 370, 424, 935
Hpy166II GTNNAC 5 cut(s) 73, 343, 361, 444, 595
Hpy188I TCNGA 5 cut(s) 160, 386, 689, 940, 981
Hpy188III TCNNGA 4 cut(s) 394, 415, 670, 724
Hpy8I GTNNAC 5 cut(s) 73, 343, 361, 444, 595
Hpy99I CGWCG 2 cut(s) 404, 629
HpyAV CCTTC 4 cut(s) 280, 391, 445, 457
HpyCH4III ACNGT 2 cut(s) 484, 880
HpyCH4IV ACGT 3 cut(s) 471, 540, 744
HpyCH4V TGCA 3 cut(s) 25, 444, 897
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 534, 813
HpyF3I CTNAG 2 cut(s) 686, 987
HpySE526I ACGT 3 cut(s) 471, 540, 744
Hsp92II CATG 7 cut(s) 307, 357, 397, 601, 667, 700, 914
HspAI GCGC 1 cut(s) 421
Ksp22I TGATCA 2 cut(s) 429, 666
Kzo9I GATC 9 cut(s) 114, 177, 390, 429, 570, 654, 666, 726, 940
LguI GCTCTTC 1 cut(s) 284
LmnI GCTCC 1 cut(s) 186
Lsp1109I GCAGC 2 cut(s) 274, 828
LweI GCATC 1 cut(s) 54
MaeI CTAG 1 cut(s) 621
MaeII ACGT 3 cut(s) 471, 540, 744
MaeIII GTNAC 1 cut(s) 265
MalI GATC 9 cut(s) 116, 179, 392, 431, 572, 656, 668, 728, 942
MboI GATC 9 cut(s) 114, 177, 390, 429, 570, 654, 666, 726, 940
MboII GAAGA 9 cut(s) 82, 127, 160, 271, 304, 451, 535, 653, 709
MflI RGATCY 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 446
MluCI AATT 2 cut(s) 495, 552
MmeI TCCRAC 2 cut(s) 183, 618
MseI TTAA 2 cut(s) 846, 1012
MslI CAYNNNNRTG 2 cut(s) 302, 701
MspCI CTTAAG 1 cut(s) 845
MspI CCGG 1 cut(s) 370
MspR9I CCNGG 4 cut(s) 175, 370, 371, 452
MvaI CCWGG 2 cut(s) 175, 452
MvnI CGCG 2 cut(s) 423, 528
MwoI GCNNNNNNNGC 3 cut(s) 102, 534, 813
NciI CCSGG 2 cut(s) 370, 371
NdeII GATC 9 cut(s) 114, 177, 390, 429, 570, 654, 666, 726, 940
NheI GCTAGC 1 cut(s) 620
NlaIII CATG 7 cut(s) 307, 357, 397, 601, 667, 700, 914
NlaIV GGNNCC 1 cut(s) 179
NspI RCATGY 2 cut(s) 357, 700
PaeI GCATGC 1 cut(s) 357
PaeR7I CTCGAG 1 cut(s) 947
PagI TCATGA 1 cut(s) 393
PciI ACATGT 1 cut(s) 696
PciSI GCTCTTC 1 cut(s) 284
PfeI GAWTC 2 cut(s) 56, 853
PflMI CCANNNNNTGG 2 cut(s) 261, 609
PfoI TCCNGGA 1 cut(s) 173
PkrI GCNGC 2 cut(s) 289, 843
PscI ACATGT 1 cut(s) 696
Psp6I CCWGG 2 cut(s) 173, 450
PspEI GGTNACC 1 cut(s) 265
PspGI CCWGG 2 cut(s) 173, 450
PspN4I GGNNCC 1 cut(s) 179
PspXI VCTCGAGB 1 cut(s) 947
PsuI RGATCY 1 cut(s) 177
RsaI GTAC 3 cut(s) 578, 596, 905
RsaNI GTAC 3 cut(s) 577, 595, 904
RseI CAYNNNNRTG 2 cut(s) 302, 701
SapI GCTCTTC 1 cut(s) 284
SaqAI TTAA 2 cut(s) 846, 1012
SatI GCNGC 2 cut(s) 288, 842
Sau3AI GATC 9 cut(s) 114, 177, 390, 429, 570, 654, 666, 726, 940
ScrFI CCNGG 4 cut(s) 175, 370, 371, 452
SduI GDGCHC 1 cut(s) 446
SfaNI GCATC 1 cut(s) 54
Sfr274I CTCGAG 1 cut(s) 947
SlaI CTCGAG 1 cut(s) 947
SmaI CCCGGG 1 cut(s) 371
SmiMI CAYNNNNRTG 2 cut(s) 302, 701
SmlI CTYRAG 3 cut(s) 845, 947, 1001
SmoI CTYRAG 3 cut(s) 845, 947, 1001
SphI GCATGC 1 cut(s) 357
Sse9I AATT 2 cut(s) 495, 552
SsiI CCGC 4 cut(s) 184, 333, 366, 528
SspMI CTAG 1 cut(s) 621
StyD4I CCNGG 4 cut(s) 173, 368, 369, 450
StyI CCWWGG 2 cut(s) 198, 407
TaaI ACNGT 2 cut(s) 484, 880
TaiI ACGT 3 cut(s) 474, 543, 747
TaqI TCGA 1 cut(s) 948
TasI AATT 2 cut(s) 495, 552
TatI WGTACW 1 cut(s) 594
TfiI GAWTC 2 cut(s) 56, 853
Tru1I TTAA 2 cut(s) 846, 1012
Tru9I TTAA 2 cut(s) 846, 1012
TscAI CASTG 1 cut(s) 304
TseI GCWGC 2 cut(s) 287, 841
TspDTI ATGAA 4 cut(s) 121, 709, 747, 927
TspMI CCCGGG 1 cut(s) 369
TspRI CASTG 1 cut(s) 304
Van91I CCANNNNNTGG 2 cut(s) 261, 609
Vha464I CTTAAG 1 cut(s) 845
VneI GTGCAC 1 cut(s) 442
XceI RCATGY 2 cut(s) 357, 700
XcmI CCANNNNNNNNNTGG 1 cut(s) 334
XhoI CTCGAG 1 cut(s) 947
XmaI CCCGGG 1 cut(s) 369
XmiI GTMKAC 3 cut(s) 72, 342, 360
XspI CTAG 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.