RLG00000013281

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0008118
Physical Location & Seq
Reverse (-)
29175836 .. 29177274
1439 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013281

Sequence Viewer

Length: 1041 bp
ATGGATAGAGAACAAGATGAGTTGCAGTTCCTTAGTCTCTTTGGCATCTACAGAGAATCCTACAAGATTGTATACAAATGGAGAAAAATCTTCAGCCAAATCACCTTGACCTTGATCCTCCCTTTGAGCTTCATCTTCTTGGCTCACATAGAAGTCTCCAGCATCCTGAAGAAGAGGATCATCCACAGCGAATACGCCTTGGACGAAACGAGACCGGACACCGCTCTCTACAAGAGAATAAATGACGTCCTCACCAAAGAATGGGCAACCTTCTGGCTCTTCAAGGCTGCTTACTTAACTTGCATGCTCATCTTCAGCCTCCTCTCCACCTCCGCCGTGGTATACACCATCGCATGCGTATACACCGCCCGGGAAATCACCTTCCGGAAGATCATGAGCGTCGTTCCAAGGGTTTGGAAGCGCGTGATGATCACCTTCTTGTGCACCTTCCTGGCTTTCTTCCTCTACAACCTAGTGGCAACAGCAGTCCTAATTGTCTGGTTTGCTTTCTTATACAGCACACGTGGAGACGGCCACGCCCTCGTCATAATTGGTATCTTTTTATTGATCTTGTACCTTGTTGGGTTCGTGTACATGACCATAATTTGGCAACTGTCTAGCGTCGTGTCGGTGTTGGAAGAAACGAAAGGGATCAAAGCCATGATCAAGAGCAAGAAGCTTCTCAGAGGGAACATGTGGGTGGCCTCAATCATCTTCTTCAAGATCAATGTTTCAGCCCTTGTTATTCAGTATTCATTTCAAGTATTGGTTGTGCGTGGATGGATGTTATTTGGGACGATGAGCAGGATAGGCTTCGGTGTTCTCTTATTGTTGATGCTGCTTAAGTTGATTCTGTTTATGCTGGTCATCCAAACGGTGCTTTACTTCGTCTGCAAATCTTACCACCATGAAAAAATCGACAAGTCGGCCCTGTCGGATCACCTCGAGGTTATTTATCTGGGAGACTATGTTCCTCTGAAGTCTAAGGATGTTCAGCTGGAGCAGTTTTTTTATTTTAGTCGCGTCTTTGGCGTGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

347

Amino Acids

40.36

Weight (kDa)

9.55

Isoelectric Point (pI)

27.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 249
AbsI CCTCGAGG 1 cut(s) 944
AccB7I CCANNNNNTGG 2 cut(s) 261, 606
AccBSI CCGCTC 1 cut(s) 224
AccI GTMKAC 3 cut(s) 72, 342, 360
AccII CGCG 2 cut(s) 423, 1023
AccIII TCCGGA 1 cut(s) 384
AciI CCGC 3 cut(s) 222, 333, 366
AclWI GGATC 4 cut(s) 109, 185, 659, 945
AcoI YGGCCR 1 cut(s) 532
AcuI CTGAAG 4 cut(s) 76, 188, 298, 998
AcvI CACGTG 1 cut(s) 524
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 2 cut(s) 575, 593
AfiI CCNNNNNNNGG 2 cut(s) 261, 606
AflII CTTAAG 1 cut(s) 842
AflIII ACRYGT 2 cut(s) 521, 693
AgsI TTSAA 3 cut(s) 283, 721, 761
AjnI CCWGG 1 cut(s) 450
AloI GAACNNNNNNTCC 2 cut(s) 954, 986
AluBI AGCT 3 cut(s) 129, 679, 997
AluI AGCT 3 cut(s) 129, 679, 997
Alw21I GWGCWC 1 cut(s) 446
Alw26I GTCTC 5 cut(s) 41, 160, 205, 522, 957
Alw44I GTGCAC 1 cut(s) 442
AlwI GGATC 4 cut(s) 109, 185, 659, 945
Ama87I CYCGRG 2 cut(s) 369, 944
Aor13HI TCCGGA 1 cut(s) 384
AoxI GGCC 3 cut(s) 532, 702, 927
ApaLI GTGCAC 1 cut(s) 442
ApeKI GCWGC 2 cut(s) 287, 838
AspLEI GCGC 1 cut(s) 423
AspS9I GGNCC 1 cut(s) 928
AsuC2I CCSGG 2 cut(s) 370, 371
AsuHPI GGTGA 5 cut(s) 94, 244, 370, 424, 932
AvaI CYCGRG 2 cut(s) 369, 944
BaeGI GKGCMC 1 cut(s) 446
BbrPI CACGTG 1 cut(s) 524
Bbv12I GWGCWC 1 cut(s) 446
BbvI GCAGC 2 cut(s) 274, 825
BccI CCATC 2 cut(s) 356, 774
BceAI ACGGC 2 cut(s) 320, 547
BciT130I CCWGG 1 cut(s) 452
BclI TGATCA 2 cut(s) 429, 663
BcnI CCSGG 2 cut(s) 370, 371
BcoDI GTCTC 5 cut(s) 41, 160, 205, 522, 957
BfaI CTAG 2 cut(s) 473, 618
BfmI CTRYAG 1 cut(s) 49
BfrI CTTAAG 1 cut(s) 842
BisI GCNGC 2 cut(s) 288, 839
BlsI GCNGC 2 cut(s) 289, 840
Bme1390I CCNGG 3 cut(s) 370, 371, 452
BmeT110I CYCGRG 2 cut(s) 369, 944
BmgT120I GGNCC 1 cut(s) 928
BmrFI CCNGG 3 cut(s) 370, 371, 452
BmsI GCATC 3 cut(s) 54, 171, 825
BpmI CTGGAG 2 cut(s) 142, 1019
BpuMI CCSGG 2 cut(s) 370, 371
BsaAI YACGTR 1 cut(s) 524
BsaHI GRCGYC 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 205
BsaJI CCNNGG 4 cut(s) 198, 336, 369, 407
BsaWI WCCGGW 2 cut(s) 214, 384
BsaXI ACNNNNNCTCC 2 cut(s) 954, 984
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 606
BseAI TCCGGA 1 cut(s) 384
BseBI CCWGG 1 cut(s) 452
BseDI CCNNGG 4 cut(s) 198, 336, 369, 407
BseGI GGATG 6 cut(s) 162, 180, 785, 789, 867, 994
BseLI CCNNNNNNNGG 2 cut(s) 261, 606
BseMII CTCAG 1 cut(s) 697
BseRI GAGGAG 1 cut(s) 311
BseSI GKGCMC 1 cut(s) 446
BseXI GCAGC 2 cut(s) 274, 825
Bsh1236I CGCG 2 cut(s) 423, 1023
BshFI GGCC 3 cut(s) 534, 704, 929
BsiHKAI GWGCWC 1 cut(s) 446
BsiHKCI CYCGRG 2 cut(s) 369, 944
BsiSI CCGG 3 cut(s) 215, 370, 385
BslFI GGGAC 1 cut(s) 808
BslI CCNNNNNNNGG 2 cut(s) 261, 606
BsmAI GTCTC 5 cut(s) 41, 160, 205, 522, 957
BsmBI CGTCTC 1 cut(s) 522
BsmFI GGGAC 1 cut(s) 808
BsnI GGCC 3 cut(s) 534, 704, 929
Bso31I GGTCTC 1 cut(s) 205
BsoBI CYCGRG 2 cut(s) 369, 944
Bsp1286I GDGCHC 1 cut(s) 446
Bsp13I TCCGGA 1 cut(s) 384
Bsp1407I TGTACA 1 cut(s) 591
Bsp143I GATC 9 cut(s) 114, 177, 390, 429, 567, 651, 663, 723, 937
BspACI CCGC 3 cut(s) 222, 333, 366
BspANI GGCC 3 cut(s) 534, 704, 929
BspCNI CTCAG 1 cut(s) 696
BspEI TCCGGA 1 cut(s) 384
BspFNI CGCG 2 cut(s) 423, 1023
BspHI TCATGA 1 cut(s) 393
BspPI GGATC 4 cut(s) 109, 185, 659, 945
BspQI GCTCTTC 1 cut(s) 284
BspTI CTTAAG 1 cut(s) 842
BspTNI GGTCTC 1 cut(s) 205
BsrBI CCGCTC 1 cut(s) 224
BsrGI TGTACA 1 cut(s) 591
BssECI CCNNGG 4 cut(s) 198, 336, 369, 407
BssMI GATC 9 cut(s) 114, 177, 390, 429, 567, 651, 663, 723, 937
BssNAI GTATAC 3 cut(s) 73, 343, 361
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 2 cut(s) 198, 407
Bst1107I GTATAC 3 cut(s) 73, 343, 361
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 2 cut(s) 615, 877
Bst6I CTCTTC 2 cut(s) 167, 284
BstACI GRCGYC 1 cut(s) 246
BstAFI CTTAAG 1 cut(s) 842
BstAUI TGTACA 1 cut(s) 591
BstBAI YACGTR 1 cut(s) 524
BstC8I GCNNGC 2 cut(s) 305, 355
BstDEI CTNAG 3 cut(s) 32, 683, 984
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 6 cut(s) 162, 180, 785, 789, 867, 994
BstFNI CGCG 2 cut(s) 423, 1023
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 9 cut(s) 117, 180, 393, 432, 570, 654, 666, 726, 940
BstMAI GTCTC 5 cut(s) 41, 160, 205, 522, 957
BstMBI GATC 9 cut(s) 114, 177, 390, 429, 567, 651, 663, 723, 937
BstMWI GCNNNNNNNGC 2 cut(s) 810, 1029
BstNI CCWGG 1 cut(s) 452
BstNSI RCATGY 3 cut(s) 307, 357, 697
BstSCI CCNGG 3 cut(s) 368, 369, 450
BstSFI CTRYAG 1 cut(s) 49
BstSLI GKGCMC 1 cut(s) 446
BstUI CGCG 2 cut(s) 423, 1023
BstV1I GCAGC 2 cut(s) 274, 825
BstXI CCANNNNNNTGG 1 cut(s) 414
BstZ17I GTATAC 3 cut(s) 73, 343, 361
BsuRI GGCC 3 cut(s) 534, 704, 929
BtgI CCRYGG 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 334
BtsCI GGATG 6 cut(s) 162, 180, 785, 789, 867, 994
Cac8I GCNNGC 2 cut(s) 305, 355
CciI TCATGA 1 cut(s) 393
CfoI GCGC 1 cut(s) 423
Cfr13I GGNCC 1 cut(s) 928
Cfr9I CCCGGG 1 cut(s) 369
CseI GACGC 3 cut(s) 388, 610, 1012
Csp6I GTAC 2 cut(s) 574, 592
CviAII CATG 7 cut(s) 304, 354, 394, 595, 661, 694, 908
CviQI GTAC 2 cut(s) 574, 592
DdeI CTNAG 3 cut(s) 32, 683, 984
DpnI GATC 9 cut(s) 116, 179, 392, 431, 569, 653, 665, 725, 939
DpnII GATC 9 cut(s) 114, 177, 390, 429, 567, 651, 663, 723, 937
EaeI YGGCCR 1 cut(s) 532
Eam1104I CTCTTC 2 cut(s) 167, 284
EarI CTCTTC 2 cut(s) 167, 284
EciI GGCGGA 1 cut(s) 322
Eco130I CCWWGG 2 cut(s) 198, 407
Eco31I GGTCTC 1 cut(s) 205
Eco57I CTGAAG 4 cut(s) 76, 188, 298, 998
Eco72I CACGTG 1 cut(s) 524
Eco88I CYCGRG 2 cut(s) 369, 944
EcoRII CCWGG 1 cut(s) 450
EcoT14I CCWWGG 2 cut(s) 198, 407
ErhI CCWWGG 2 cut(s) 198, 407
Esp3I CGTCTC 1 cut(s) 522
FaeI CATG 7 cut(s) 307, 357, 397, 598, 664, 697, 911
FaqI GGGAC 1 cut(s) 808
FatI CATG 7 cut(s) 303, 353, 393, 594, 660, 693, 907
FbaI TGATCA 2 cut(s) 429, 663
FblI GTMKAC 3 cut(s) 72, 342, 360
Fnu4HI GCNGC 2 cut(s) 288, 839
FokI GGATG 6 cut(s) 149, 167, 792, 796, 854, 1001
Fsp4HI GCNGC 2 cut(s) 288, 839
FspBI CTAG 2 cut(s) 473, 618
GlaI GCGC 1 cut(s) 422
GluI GCNGC 2 cut(s) 288, 839
GsuI CTGGAG 2 cut(s) 142, 1019
HaeIII GGCC 3 cut(s) 534, 704, 929
HapII CCGG 3 cut(s) 215, 370, 385
HgaI GACGC 3 cut(s) 388, 610, 1012
HhaI GCGC 1 cut(s) 423
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 7 cut(s) 307, 357, 397, 598, 664, 697, 911
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HindIII AAGCTT 1 cut(s) 677
HinfI GANTC 2 cut(s) 56, 850
HpaII CCGG 3 cut(s) 215, 370, 385
HphI GGTGA 5 cut(s) 94, 244, 370, 424, 932
Hpy166II GTNNAC 5 cut(s) 73, 343, 361, 444, 592
Hpy188I TCNGA 3 cut(s) 686, 937, 978
Hpy188III TCNNGA 5 cut(s) 166, 385, 394, 667, 721
Hpy8I GTNNAC 5 cut(s) 73, 343, 361, 444, 592
Hpy99I CGWCG 2 cut(s) 404, 626
HpyAV CCTTC 4 cut(s) 280, 391, 445, 457
HpyCH4III ACNGT 2 cut(s) 615, 877
HpyCH4IV ACGT 2 cut(s) 246, 523
HpyCH4V TGCA 4 cut(s) 25, 303, 444, 894
HpyF10VI GCNNNNNNNGC 2 cut(s) 810, 1029
HpyF3I CTNAG 3 cut(s) 32, 683, 984
HpySE526I ACGT 2 cut(s) 246, 523
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 7 cut(s) 307, 357, 397, 598, 664, 697, 911
HspAI GCGC 1 cut(s) 421
Kpn2I TCCGGA 1 cut(s) 384
Ksp22I TGATCA 2 cut(s) 429, 663
Kzo9I GATC 9 cut(s) 114, 177, 390, 429, 567, 651, 663, 723, 937
LguI GCTCTTC 1 cut(s) 284
LmnI GCTCC 1 cut(s) 1000
Lsp1109I GCAGC 2 cut(s) 274, 825
LweI GCATC 3 cut(s) 54, 171, 825
MaeI CTAG 2 cut(s) 473, 618
MaeII ACGT 2 cut(s) 246, 523
MalI GATC 9 cut(s) 116, 179, 392, 431, 569, 653, 665, 725, 939
MbiI CCGCTC 1 cut(s) 224
MboI GATC 9 cut(s) 114, 177, 390, 429, 567, 651, 663, 723, 937
MhlI GDGCHC 1 cut(s) 446
MluCI AATT 3 cut(s) 492, 549, 603
MmeI TCCRAC 2 cut(s) 615, 915
MroI TCCGGA 1 cut(s) 384
MseI TTAA 2 cut(s) 296, 843
MslI CAYNNNNRTG 1 cut(s) 698
MspA1I CMGCKG 1 cut(s) 997
MspCI CTTAAG 1 cut(s) 842
MspI CCGG 3 cut(s) 215, 370, 385
MspR9I CCNGG 3 cut(s) 370, 371, 452
MvaI CCWGG 1 cut(s) 452
MvnI CGCG 2 cut(s) 423, 1023
MwoI GCNNNNNNNGC 2 cut(s) 810, 1029
NciI CCSGG 2 cut(s) 370, 371
NdeII GATC 9 cut(s) 114, 177, 390, 429, 567, 651, 663, 723, 937
NlaIII CATG 7 cut(s) 307, 357, 397, 598, 664, 697, 911
NspI RCATGY 3 cut(s) 307, 357, 697
PaeI GCATGC 2 cut(s) 307, 357
PaeR7I CTCGAG 1 cut(s) 944
PagI TCATGA 1 cut(s) 393
PciI ACATGT 1 cut(s) 693
PciSI GCTCTTC 1 cut(s) 284
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfeI GAWTC 2 cut(s) 56, 850
PflMI CCANNNNNTGG 2 cut(s) 261, 606
PkrI GCNGC 2 cut(s) 289, 840
PmaCI CACGTG 1 cut(s) 524
PmlI CACGTG 1 cut(s) 524
Ppu21I YACGTR 1 cut(s) 524
PscI ACATGT 1 cut(s) 693
Psp6I CCWGG 1 cut(s) 450
PspCI CACGTG 1 cut(s) 524
PspGI CCWGG 1 cut(s) 450
PspPI GGNCC 1 cut(s) 928
PspXI VCTCGAGB 1 cut(s) 944
PvuII CAGCTG 1 cut(s) 997
RsaI GTAC 2 cut(s) 575, 593
RsaNI GTAC 2 cut(s) 574, 592
RseI CAYNNNNRTG 1 cut(s) 698
SapI GCTCTTC 1 cut(s) 284
SaqAI TTAA 2 cut(s) 296, 843
SatI GCNGC 2 cut(s) 288, 839
Sau3AI GATC 9 cut(s) 114, 177, 390, 429, 567, 651, 663, 723, 937
Sau96I GGNCC 1 cut(s) 928
ScrFI CCNGG 3 cut(s) 370, 371, 452
SduI GDGCHC 1 cut(s) 446
SfaNI GCATC 3 cut(s) 54, 171, 825
SfcI CTRYAG 1 cut(s) 49
Sfr274I CTCGAG 1 cut(s) 944
SlaI CTCGAG 1 cut(s) 944
SmaI CCCGGG 1 cut(s) 371
SmiMI CAYNNNNRTG 1 cut(s) 698
SmlI CTYRAG 2 cut(s) 842, 944
SmoI CTYRAG 2 cut(s) 842, 944
SphI GCATGC 2 cut(s) 307, 357
Sse9I AATT 3 cut(s) 492, 549, 603
SsiI CCGC 3 cut(s) 222, 333, 366
SspMI CTAG 2 cut(s) 473, 618
StyD4I CCNGG 3 cut(s) 368, 369, 450
StyI CCWWGG 2 cut(s) 198, 407
TaaI ACNGT 2 cut(s) 615, 877
TaiI ACGT 2 cut(s) 249, 526
TaqI TCGA 2 cut(s) 918, 945
TasI AATT 3 cut(s) 492, 549, 603
TatI WGTACW 1 cut(s) 591
TfiI GAWTC 2 cut(s) 56, 850
Tru1I TTAA 2 cut(s) 296, 843
Tru9I TTAA 2 cut(s) 296, 843
TseI GCWGC 2 cut(s) 287, 838
TspDTI ATGAA 3 cut(s) 121, 744, 924
TspMI CCCGGG 1 cut(s) 369
Van91I CCANNNNNTGG 2 cut(s) 261, 606
Vha464I CTTAAG 1 cut(s) 842
VneI GTGCAC 1 cut(s) 442
XceI RCATGY 3 cut(s) 307, 357, 697
XcmI CCANNNNNNNNNTGG 1 cut(s) 334
XhoI CTCGAG 1 cut(s) 944
XmaI CCCGGG 1 cut(s) 369
XmiI GTMKAC 3 cut(s) 72, 342, 360
XspI CTAG 2 cut(s) 473, 618
ZraI GACGTC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.