RLG00000013280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0008118
Physical Location & Seq
Reverse (-)
29172836 .. 29173843
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013280

Sequence Viewer

Length: 1008 bp
ATGGATAGGGAACAAGATGAGCTGCAGTTCCTTGGTGTGTTTGGCATCTACAAAGAATCCTATAAGATCGTATACAAATGGAGAAAAATCTTCAGCCAAATCAGCTTGACCTTGATCCTCCCTTTGAGCTTCATCTTCTTGGCTCACATAGAAGTCTCCGACATCCTCTTCTCCAGGATCCTCCGGAACGAATATGCCTTGGACAAAACGAGACCATACAGCCCTCTCTACAAGAGAACAAACGACCTCATCACCAAAGAATGGGTAACCTTCTGGCTCTTCAAGGCTGCTTACTTCACTGCCATGCTCATCTTCGGCCTCCTTTCCACCTCCGCCGTGGTATACACCATCGCATGCGTATACACCGCCCGGGAAATCACCTTCCGAAAGATCATGAGCGTCGTCCCAAGGGTCTGGAAGCGCGTGATGATCACCTTCTTGTGCACCTTCCTGGCTTTCATCCTCTACAACGTAGTGGCAACAGTAGTCGTAATTGTTTGGTTAGCTCTCCTATCCAGCACCCGCGGAGACGGCCACGTCTTCGTCATAACTGGTATCTTTTTATTGATCTTGTACGCTGTTGGTTTCGTGTACATGACCATAATCTGGCAACTGGCTAGCGTCGTCTCGGTGTTGGAAGAAACGAAAGGGATCAAAGCCATGATCAAGAGCAAGAAGCTACTCAGAGGGAACATGTGGGTGGTCTCAATCATCTTCATCAAGATCATTGCTTTAGCCTACGTTATTCAGTTTTCATTTCAAGCATTGGTTGTGGATGGATGGGTGTTTGGGATAATGGGCAGGATAGGCTTCGGTGTTCTCTTTTTGTTGTTGCTGCTTAAGTTGATTCTGTTTTTGCTGGTCATCCAAACGGTGCTTTATTTCGTCTGCAAATCGTACCACCATGAAAACATTGACAAGTCAGCTCTATCGGATCACCTCGAGGTTATTTATCTGGGAGACTATGTTCCTCTGAAATCTAAGGATGTTCAGCTGGAGCAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

38.71

Weight (kDa)

9.41

Isoelectric Point (pI)

28.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 536
AbsI CCTCGAGG 1 cut(s) 941
AccB7I CCANNNNNTGG 2 cut(s) 261, 606
AccI GTMKAC 3 cut(s) 72, 342, 360
AccII CGCG 2 cut(s) 423, 525
AccIII TCCGGA 1 cut(s) 183
AciI CCGC 4 cut(s) 333, 366, 523, 525
AclWI GGATC 5 cut(s) 109, 172, 185, 659, 942
AcoI YGGCCR 1 cut(s) 532
AcuI CTGAAG 1 cut(s) 76
AfaI GTAC 3 cut(s) 575, 593, 899
AfiI CCNNNNNNNGG 2 cut(s) 261, 606
AflII CTTAAG 1 cut(s) 839
AflIII ACRYGT 1 cut(s) 693
AgsI TTSAA 2 cut(s) 283, 761
AjiI CACGTC 1 cut(s) 538
AjnI CCWGG 2 cut(s) 173, 450
AloI GAACNNNNNNTCC 2 cut(s) 951, 983
AluBI AGCT 8 cut(s) 22, 105, 129, 506, 679, 926, 994, 1003
AluI AGCT 8 cut(s) 22, 105, 129, 506, 679, 926, 994, 1003
Alw21I GWGCWC 1 cut(s) 446
Alw26I GTCTC 6 cut(s) 160, 205, 522, 631, 709, 954
Alw44I GTGCAC 1 cut(s) 442
AlwI GGATC 5 cut(s) 109, 172, 185, 659, 942
Ama87I CYCGRG 2 cut(s) 369, 941
Aor13HI TCCGGA 1 cut(s) 183
AoxI GGCC 2 cut(s) 316, 532
ApaLI GTGCAC 1 cut(s) 442
ApeKI GCWGC 4 cut(s) 22, 287, 835, 1000
AspLEI GCGC 1 cut(s) 423
AsuC2I CCSGG 2 cut(s) 370, 371
AsuHPI GGTGA 4 cut(s) 244, 370, 424, 929
AsuNHI GCTAGC 1 cut(s) 617
AvaI CYCGRG 2 cut(s) 369, 941
BaeGI GKGCMC 1 cut(s) 446
BamHI GGATCC 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 532
Bbv12I GWGCWC 1 cut(s) 446
BbvI GCAGC 3 cut(s) 9, 274, 822
BccI CCATC 3 cut(s) 356, 770, 774
BceAI ACGGC 2 cut(s) 320, 547
BciT130I CCWGG 2 cut(s) 175, 452
BclI TGATCA 2 cut(s) 429, 663
BcnI CCSGG 2 cut(s) 370, 371
BcoDI GTCTC 6 cut(s) 160, 205, 522, 631, 709, 954
BfaI CTAG 1 cut(s) 618
BfmI CTRYAG 1 cut(s) 23
BfrI CTTAAG 1 cut(s) 839
BisI GCNGC 4 cut(s) 23, 288, 836, 1001
BlsI GCNGC 4 cut(s) 24, 289, 837, 1002
Bme1390I CCNGG 4 cut(s) 175, 370, 371, 452
BmeT110I CYCGRG 2 cut(s) 369, 941
BmgBI CACGTC 1 cut(s) 538
BmiI GGNNCC 1 cut(s) 179
BmrFI CCNGG 4 cut(s) 175, 370, 371, 452
BmsI GCATC 1 cut(s) 54
BmtI GCTAGC 1 cut(s) 621
BpiI GAAGAC 1 cut(s) 532
BpmI CTGGAG 1 cut(s) 157
BpuMI CCSGG 2 cut(s) 370, 371
BsaI GGTCTC 2 cut(s) 205, 709
BsaJI CCNNGG 6 cut(s) 31, 198, 336, 369, 407, 523
BsaWI WCCGGW 1 cut(s) 183
BsaXI ACNNNNNCTCC 2 cut(s) 951, 981
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 606
Bse1I ACTGG 2 cut(s) 556, 618
Bse3DI GCAATG 1 cut(s) 726
BseAI TCCGGA 1 cut(s) 183
BseBI CCWGG 2 cut(s) 175, 452
BseDI CCNNGG 6 cut(s) 31, 198, 336, 369, 407, 523
BseGI GGATG 6 cut(s) 162, 459, 781, 785, 864, 991
BseLI CCNNNNNNNGG 2 cut(s) 261, 606
BseMI GCAATG 1 cut(s) 726
BseMII CTCAG 1 cut(s) 697
BseNI ACTGG 2 cut(s) 556, 618
BseSI GKGCMC 1 cut(s) 446
BseXI GCAGC 3 cut(s) 9, 274, 822
Bsh1236I CGCG 2 cut(s) 423, 525
BshFI GGCC 2 cut(s) 318, 534
BsiHKAI GWGCWC 1 cut(s) 446
BsiHKCI CYCGRG 2 cut(s) 369, 941
BsiSI CCGG 2 cut(s) 184, 370
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 2 cut(s) 261, 606
BsmAI GTCTC 6 cut(s) 160, 205, 522, 631, 709, 954
BsmBI CGTCTC 2 cut(s) 522, 631
BsmFI GGGAC 1 cut(s) 389
BsnI GGCC 2 cut(s) 318, 534
Bso31I GGTCTC 2 cut(s) 205, 709
BsoBI CYCGRG 2 cut(s) 369, 941
Bsp1286I GDGCHC 1 cut(s) 446
Bsp13I TCCGGA 1 cut(s) 183
Bsp1407I TGTACA 1 cut(s) 591
BspACI CCGC 4 cut(s) 333, 366, 523, 525
BspANI GGCC 2 cut(s) 318, 534
BspCNI CTCAG 1 cut(s) 696
BspEI TCCGGA 1 cut(s) 183
BspFNI CGCG 2 cut(s) 423, 525
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 1 cut(s) 179
BspMAI CTGCAG 1 cut(s) 27
BspOI GCTAGC 1 cut(s) 621
BspPI GGATC 5 cut(s) 109, 172, 185, 659, 942
BspQI GCTCTTC 1 cut(s) 284
BspTI CTTAAG 1 cut(s) 839
BspTNI GGTCTC 2 cut(s) 205, 709
BsrDI GCAATG 1 cut(s) 726
BsrGI TGTACA 1 cut(s) 591
BsrI ACTGG 2 cut(s) 556, 618
BssECI CCNNGG 6 cut(s) 31, 198, 336, 369, 407, 523
BssNAI GTATAC 3 cut(s) 73, 343, 361
BssT1I CCWWGG 3 cut(s) 31, 198, 407
Bst1107I GTATAC 3 cut(s) 73, 343, 361
Bst2UI CCWGG 2 cut(s) 175, 452
Bst4CI ACNGT 2 cut(s) 484, 874
Bst6I CTCTTC 2 cut(s) 173, 284
BstAFI CTTAAG 1 cut(s) 839
BstAUI TGTACA 1 cut(s) 591
BstC8I GCNNGC 2 cut(s) 355, 619
BstDEI CTNAG 2 cut(s) 683, 981
BstDSI CCRYGG 2 cut(s) 336, 523
BstEII GGTNACC 1 cut(s) 265
BstF5I GGATG 6 cut(s) 162, 459, 781, 785, 864, 991
BstFNI CGCG 2 cut(s) 423, 525
BstHHI GCGC 1 cut(s) 423
BstMAI GTCTC 6 cut(s) 160, 205, 522, 631, 709, 954
BstMWI GCNNNNNNNGC 4 cut(s) 102, 531, 807, 1000
BstNI CCWGG 2 cut(s) 175, 452
BstNSI RCATGY 2 cut(s) 357, 697
BstPI GGTNACC 1 cut(s) 265
BstSCI CCNGG 4 cut(s) 173, 368, 369, 450
BstSFI CTRYAG 1 cut(s) 23
BstSLI GKGCMC 1 cut(s) 446
BstUI CGCG 2 cut(s) 423, 525
BstV1I GCAGC 3 cut(s) 9, 274, 822
BstV2I GAAGAC 1 cut(s) 532
BstX2I RGATCY 1 cut(s) 177
BstXI CCANNNNNNTGG 1 cut(s) 414
BstYI RGATCY 1 cut(s) 177
BstZ17I GTATAC 3 cut(s) 73, 343, 361
BsuRI GGCC 2 cut(s) 318, 534
BtgI CCRYGG 2 cut(s) 336, 523
BtgZI GCGATG 1 cut(s) 334
BtrI CACGTC 1 cut(s) 538
BtsCI GGATG 6 cut(s) 162, 459, 781, 785, 864, 991
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 2 cut(s) 355, 619
CciI TCATGA 1 cut(s) 393
CfoI GCGC 1 cut(s) 423
Cfr42I CCGCGG 1 cut(s) 526
Cfr9I CCCGGG 1 cut(s) 369
CseI GACGC 2 cut(s) 388, 610
Csp6I GTAC 3 cut(s) 574, 592, 898
CviAII CATG 7 cut(s) 304, 354, 394, 595, 661, 694, 905
CviQI GTAC 3 cut(s) 574, 592, 898
DdeI CTNAG 2 cut(s) 683, 981
DrdI GACNNNNNNGTC 1 cut(s) 536
DseDI GACNNNNNNGTC 1 cut(s) 536
EaeI YGGCCR 1 cut(s) 532
Eam1104I CTCTTC 2 cut(s) 173, 284
EarI CTCTTC 2 cut(s) 173, 284
EciI GGCGGA 1 cut(s) 322
Eco130I CCWWGG 3 cut(s) 31, 198, 407
Eco31I GGTCTC 2 cut(s) 205, 709
Eco57I CTGAAG 1 cut(s) 76
Eco88I CYCGRG 2 cut(s) 369, 941
Eco91I GGTNACC 1 cut(s) 265
EcoO65I GGTNACC 1 cut(s) 265
EcoRII CCWGG 2 cut(s) 173, 450
EcoT14I CCWWGG 3 cut(s) 31, 198, 407
ErhI CCWWGG 3 cut(s) 31, 198, 407
Esp3I CGTCTC 2 cut(s) 522, 631
FaeI CATG 7 cut(s) 307, 357, 397, 598, 664, 697, 908
FaqI GGGAC 1 cut(s) 389
FatI CATG 7 cut(s) 303, 353, 393, 594, 660, 693, 904
FauI CCCGC 1 cut(s) 530
FbaI TGATCA 2 cut(s) 429, 663
FblI GTMKAC 3 cut(s) 72, 342, 360
Fnu4HI GCNGC 4 cut(s) 23, 288, 836, 1001
FokI GGATG 6 cut(s) 149, 446, 788, 792, 851, 998
Fsp4HI GCNGC 4 cut(s) 23, 288, 836, 1001
FspBI CTAG 1 cut(s) 618
GlaI GCGC 1 cut(s) 422
GluI GCNGC 4 cut(s) 23, 288, 836, 1001
GsuI CTGGAG 1 cut(s) 157
HaeIII GGCC 2 cut(s) 318, 534
HapII CCGG 2 cut(s) 184, 370
HgaI GACGC 2 cut(s) 388, 610
HhaI GCGC 1 cut(s) 423
Hin1II CATG 7 cut(s) 307, 357, 397, 598, 664, 697, 908
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HinfI GANTC 2 cut(s) 56, 847
HpaII CCGG 2 cut(s) 184, 370
HphI GGTGA 4 cut(s) 244, 370, 424, 929
Hpy166II GTNNAC 5 cut(s) 73, 343, 361, 444, 592
Hpy188I TCNGA 5 cut(s) 160, 386, 686, 934, 975
Hpy188III TCNNGA 5 cut(s) 184, 394, 415, 667, 721
Hpy8I GTNNAC 5 cut(s) 73, 343, 361, 444, 592
Hpy99I CGWCG 2 cut(s) 404, 626
HpyAV CCTTC 4 cut(s) 280, 391, 445, 457
HpyCH4III ACNGT 2 cut(s) 484, 874
HpyCH4IV ACGT 3 cut(s) 471, 537, 741
HpyCH4V TGCA 3 cut(s) 25, 444, 891
HpyF10VI GCNNNNNNNGC 4 cut(s) 102, 531, 807, 1000
HpyF3I CTNAG 2 cut(s) 683, 981
HpySE526I ACGT 3 cut(s) 471, 537, 741
Hsp92II CATG 7 cut(s) 307, 357, 397, 598, 664, 697, 908
HspAI GCGC 1 cut(s) 421
Kpn2I TCCGGA 1 cut(s) 183
Ksp22I TGATCA 2 cut(s) 429, 663
KspI CCGCGG 1 cut(s) 526
LguI GCTCTTC 1 cut(s) 284
LmnI GCTCC 1 cut(s) 997
Lsp1109I GCAGC 3 cut(s) 9, 274, 822
LweI GCATC 1 cut(s) 54
MaeI CTAG 1 cut(s) 618
MaeII ACGT 3 cut(s) 471, 537, 741
MaeIII GTNAC 1 cut(s) 265
MboII GAAGA 8 cut(s) 82, 127, 160, 271, 304, 532, 650, 706
MflI RGATCY 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 446
MluCI AATT 1 cut(s) 492
MmeI TCCRAC 2 cut(s) 183, 615
MroI TCCGGA 1 cut(s) 183
MseI TTAA 2 cut(s) 840, 1006
MslI CAYNNNNRTG 2 cut(s) 302, 698
MspA1I CMGCKG 2 cut(s) 525, 994
MspCI CTTAAG 1 cut(s) 839
MspI CCGG 2 cut(s) 184, 370
MspR9I CCNGG 4 cut(s) 175, 370, 371, 452
MvaI CCWGG 2 cut(s) 175, 452
MvnI CGCG 2 cut(s) 423, 525
MwoI GCNNNNNNNGC 4 cut(s) 102, 531, 807, 1000
NciI CCSGG 2 cut(s) 370, 371
NheI GCTAGC 1 cut(s) 617
NlaIII CATG 7 cut(s) 307, 357, 397, 598, 664, 697, 908
NlaIV GGNNCC 1 cut(s) 179
NspI RCATGY 2 cut(s) 357, 697
PaeI GCATGC 1 cut(s) 357
PaeR7I CTCGAG 1 cut(s) 941
PagI TCATGA 1 cut(s) 393
PciI ACATGT 1 cut(s) 693
PciSI GCTCTTC 1 cut(s) 284
PfeI GAWTC 2 cut(s) 56, 847
PflMI CCANNNNNTGG 2 cut(s) 261, 606
PfoI TCCNGGA 1 cut(s) 173
PkrI GCNGC 4 cut(s) 24, 289, 837, 1002
PscI ACATGT 1 cut(s) 693
Psp6I CCWGG 2 cut(s) 173, 450
PspEI GGTNACC 1 cut(s) 265
PspGI CCWGG 2 cut(s) 173, 450
PspN4I GGNNCC 1 cut(s) 179
PspXI VCTCGAGB 1 cut(s) 941
PstI CTGCAG 1 cut(s) 27
PsuI RGATCY 1 cut(s) 177
PvuII CAGCTG 1 cut(s) 994
RsaI GTAC 3 cut(s) 575, 593, 899
RsaNI GTAC 3 cut(s) 574, 592, 898
RseI CAYNNNNRTG 2 cut(s) 302, 698
SacII CCGCGG 1 cut(s) 526
SapI GCTCTTC 1 cut(s) 284
SaqAI TTAA 2 cut(s) 840, 1006
SatI GCNGC 4 cut(s) 23, 288, 836, 1001
ScrFI CCNGG 4 cut(s) 175, 370, 371, 452
SduI GDGCHC 1 cut(s) 446
SfaNI GCATC 1 cut(s) 54
SfcI CTRYAG 1 cut(s) 23
Sfr274I CTCGAG 1 cut(s) 941
Sfr303I CCGCGG 1 cut(s) 526
SgrBI CCGCGG 1 cut(s) 526
SlaI CTCGAG 1 cut(s) 941
SmaI CCCGGG 1 cut(s) 371
SmiMI CAYNNNNRTG 2 cut(s) 302, 698
SmlI CTYRAG 2 cut(s) 839, 941
SmoI CTYRAG 2 cut(s) 839, 941
SphI GCATGC 1 cut(s) 357
Sse9I AATT 1 cut(s) 492
SsiI CCGC 4 cut(s) 333, 366, 523, 525
SspMI CTAG 1 cut(s) 618
StyD4I CCNGG 4 cut(s) 173, 368, 369, 450
StyI CCWWGG 3 cut(s) 31, 198, 407
TaaI ACNGT 2 cut(s) 484, 874
TaiI ACGT 3 cut(s) 474, 540, 744
TaqI TCGA 1 cut(s) 942
TasI AATT 1 cut(s) 492
TatI WGTACW 1 cut(s) 591
TfiI GAWTC 2 cut(s) 56, 847
Tru1I TTAA 2 cut(s) 840, 1006
Tru9I TTAA 2 cut(s) 840, 1006
TscAI CASTG 1 cut(s) 304
TseI GCWGC 4 cut(s) 22, 287, 835, 1000
TspDTI ATGAA 5 cut(s) 121, 448, 706, 744, 921
TspMI CCCGGG 1 cut(s) 369
TspRI CASTG 1 cut(s) 304
Van91I CCANNNNNTGG 2 cut(s) 261, 606
Vha464I CTTAAG 1 cut(s) 839
VneI GTGCAC 1 cut(s) 442
XceI RCATGY 2 cut(s) 357, 697
XcmI CCANNNNNNNNNTGG 1 cut(s) 334
XhoI CTCGAG 1 cut(s) 941
XmaI CCCGGG 1 cut(s) 369
XmiI GTMKAC 3 cut(s) 72, 342, 360
XspI CTAG 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.