Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0008118

Physical Location & Seq

Genomic Coordinates Forward (+)

38665153 .. 38667662

Gene Structure 2510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G019360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGATAGAGAACAAGATGAGTTGCAGTTCCTTAGTCTCTTTGGCATCTACAAAGAATCCTACAAGATTGTATACAAATGGAGAAAAATCTTCAGCCAAATCACTTTGACCTTGATCCTCCCTTTGAGCTTCATCTTCTTGGCTGACATGGAAGTCTCCAACATCCTCTTCTTCAGGATCATCCACAGCGAAAGCGCCTTGGACGAAACGAGACCAGACACCGCTCGCTACAAGAGAATAAGTGACGTCCTCACCAAAGAAAGGGCAACCTTCTGGCTCTTCAAGGCTGCTTACTTCACTTCCATGCTCATCTTCAGCCTCCTCTCCACCTCCGCCGTGGTGTACACCATCGCATGCGTATACACCGCTCGGGAAATCACCTTCCGGAAGATCATGAGTGTCGTTCCAAGGGTCTGGAAGCGCGTGATGATCACCTTCTTGTGCACCGTCCTGGCTTTCTTACTCTACAACATAGTGGCAGTAGTAGTCGGAATTGTTTGCTTAGCTCTCTTATACAGCAACGACGGAGACGGCGGCCTCGCCTTCTTCATAACTTTTATCTTTTTATTGATCTTGTACGCTATTGGGTTCGTGTACATGACCATAATCTGGCAACTGGCTAGCGTTGTCTCGGTGTTGGAAGAAACGAAAGGGATCAAGGCCATGATCAAGAGCAAGAAGCTACTCAGAGGGAACATGTGGGCGGCCTCAATCATCTTCTTCAAGATCGTTGCTTTAGCCTACGTTATTCAGTTTTCATTTCAAGCATTGGTTGTGGATGGATGGGTGTTTGGGATAATGGGCAGGATAGGCTTCGGTGTTCTCTTATTGTTGCTGCTGCTTAAGTTGATTCTGTTTCTGCTGGTCATCCAAACGTCGGCCCTGTCGTATCACCTCGAGGTTATTTATCTGGGAGACTATGTTCCTCTGAAGTCTAAGGATGTTCAGCTCGAGCAGTTTTTCTTCTTCCTCTTCCTCTTCCCTTTCTTCAGCAAAACCTCATTCATTCTGTCGACCTCTGAAGCGGCTGCATATGAATACAACCTAACCATCAAATGTTACGTAAAAAGCCATGATTGTTGGCGTGAGTCACTCTCCATAATTGTAGGAATTGTAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

373

Amino Acids

42.88

Weight (kDa)

9.09

Isoelectric Point (pI)

24.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15070
malus_domestica	MD05G1011000.v1.1 MD10G1010500.v1.1 MD10G1010700.v1.1
prunus_persica	Prupe.8G014200_v2.0.a1
pyrus_communis	pycom05g00620 pycom10g00680
rosa_chinensis	RchiOBHm_Chr6g0277711 RchiOBHm_Chr6g0277721
rosa_laevigata	RLG00000013280 RLG00000013281
rosa_multiflora	Rmu_sc0007109.1_g000007 Rmu_sc0007109.1_g000008 Rmu_sc0007109.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191010 Rroxscaffold_7G00191030
rosa_rugosa	Rorug06G0110500 Rorug06G0110500
rosa_samantha	Rh6BG225000 Rh6CG227400 Rh6DG218100 Rh6DG218200
rosa_wichuraiana	Rw6G019360 Rw6G019370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
AatII	GACGTC	1 cut(s)	249
AbsI	CCTCGAGG	1 cut(s)	896
AccB7I	CCANNNNNTGG	1 cut(s)	609
AccBSI	CCGCTC	2 cut(s)	224, 368
AccI	GTMKAC	3 cut(s)	72, 360, 1013
AccII	CGCG	1 cut(s)	423
AccIII	TCCGGA	1 cut(s)	384
AciI	CCGC	6 cut(s)	222, 333, 366, 534, 704, 1025
AclWI	GGATC	3 cut(s)	109, 185, 662
AcuI	CTGAAG	6 cut(s)	76, 157, 298, 950, 973, 1041
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	3 cut(s)	344, 578, 596
AfiI	CCNNNNNNNGG	3 cut(s)	261, 609, 877
AflII	CTTAAG	1 cut(s)	842
AflIII	ACRYGT	1 cut(s)	696
AgsI	TTSAA	3 cut(s)	283, 724, 764
AjnI	CCWGG	1 cut(s)	450
AjuI	GAANNNNNNNTTGG	2 cut(s)	152, 184
AloI	GAACNNNNNNTCC	2 cut(s)	906, 938
AluBI	AGCT	4 cut(s)	129, 506, 682, 949
AluI	AGCT	4 cut(s)	129, 506, 682, 949
Alw21I	GWGCWC	1 cut(s)	446
Alw26I	GTCTC	6 cut(s)	41, 160, 205, 522, 634, 909
Alw44I	GTGCAC	1 cut(s)	442
AlwI	GGATC	3 cut(s)	109, 185, 662
Ama87I	CYCGRG	3 cut(s)	369, 896, 950
Aor13HI	TCCGGA	1 cut(s)	384
AoxI	GGCC	4 cut(s)	535, 660, 705, 879
ApaLI	GTGCAC	1 cut(s)	442
ApeKI	GCWGC	4 cut(s)	287, 835, 838, 1028
AspLEI	GCGC	2 cut(s)	197, 423
AspS9I	GGNCC	1 cut(s)	880
AsuHPI	GGTGA	4 cut(s)	244, 370, 424, 884
AsuNHI	GCTAGC	1 cut(s)	620
AvaI	CYCGRG	3 cut(s)	369, 896, 950
BaeGI	GKGCMC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	446
BbvI	GCAGC	4 cut(s)	274, 822, 825, 1015
BccI	CCATC	4 cut(s)	356, 773, 777, 1058
BceAI	ACGGC	2 cut(s)	320, 547
BciT130I	CCWGG	1 cut(s)	452
BclI	TGATCA	2 cut(s)	429, 666
BcoDI	GTCTC	6 cut(s)	41, 160, 205, 522, 634, 909
BfaI	CTAG	1 cut(s)	621
BfoI	RGCGCY	1 cut(s)	198
BfrI	CTTAAG	1 cut(s)	842
BisI	GCNGC	7 cut(s)	288, 535, 705, 836, 839, 1026, 1029
BlpI	GCTNAGC	1 cut(s)	502
BlsI	GCNGC	7 cut(s)	289, 536, 706, 837, 840, 1027, 1030
Bme1390I	CCNGG	1 cut(s)	452
BmeT110I	CYCGRG	3 cut(s)	369, 896, 950
BmgT120I	GGNCC	1 cut(s)	880
BmrFI	CCNGG	1 cut(s)	452
BmsI	GCATC	1 cut(s)	54
BmtI	GCTAGC	1 cut(s)	624
BplI	GAGNNNNNCTC	2 cut(s)	1079, 1111
Bpu1102I	GCTNAGC	1 cut(s)	502
BsaAI	YACGTR	1 cut(s)	1063
BsaHI	GRCGYC	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	3 cut(s)	198, 336, 407
BsaWI	WCCGGW	1 cut(s)	384
BsaXI	ACNNNNNCTCC	2 cut(s)	906, 936
Bsc4I	CCNNNNNNNGG	3 cut(s)	261, 609, 877
Bse1I	ACTGG	1 cut(s)	621
BseAI	TCCGGA	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	452
BseDI	CCNNGG	3 cut(s)	198, 336, 407
BseGI	GGATG	6 cut(s)	162, 180, 784, 788, 867, 946
BseLI	CCNNNNNNNGG	3 cut(s)	261, 609, 877
BseMII	CTCAG	1 cut(s)	700
BseNI	ACTGG	1 cut(s)	621
BseRI	GAGGAG	1 cut(s)	311
BseSI	GKGCMC	1 cut(s)	446
BseXI	GCAGC	4 cut(s)	274, 822, 825, 1015
Bsh1236I	CGCG	1 cut(s)	423
BshFI	GGCC	4 cut(s)	537, 662, 707, 881
BsiHKAI	GWGCWC	1 cut(s)	446
BsiHKCI	CYCGRG	3 cut(s)	369, 896, 950
BsiSI	CCGG	1 cut(s)	385
BslI	CCNNNNNNNGG	3 cut(s)	261, 609, 877
BsmAI	GTCTC	6 cut(s)	41, 160, 205, 522, 634, 909
BsmBI	CGTCTC	1 cut(s)	522
BsnI	GGCC	4 cut(s)	537, 662, 707, 881
Bso31I	GGTCTC	1 cut(s)	205
BsoBI	CYCGRG	3 cut(s)	369, 896, 950
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp13I	TCCGGA	1 cut(s)	384
Bsp1407I	TGTACA	2 cut(s)	342, 594
Bsp143I	GATC	8 cut(s)	114, 177, 390, 429, 570, 654, 666, 726
Bsp1720I	GCTNAGC	1 cut(s)	502
BspACI	CCGC	6 cut(s)	222, 333, 366, 534, 704, 1025
BspANI	GGCC	4 cut(s)	537, 662, 707, 881
BspCNI	CTCAG	1 cut(s)	699
BspEI	TCCGGA	1 cut(s)	384
BspFNI	CGCG	1 cut(s)	423
BspHI	TCATGA	1 cut(s)	393
BspOI	GCTAGC	1 cut(s)	624
BspPI	GGATC	3 cut(s)	109, 185, 662
BspQI	GCTCTTC	1 cut(s)	284
BspTI	CTTAAG	1 cut(s)	842
BspTNI	GGTCTC	1 cut(s)	205
BsrBI	CCGCTC	2 cut(s)	224, 368
BsrGI	TGTACA	2 cut(s)	342, 594
BsrI	ACTGG	1 cut(s)	621
BssECI	CCNNGG	3 cut(s)	198, 336, 407
BssMI	GATC	8 cut(s)	114, 177, 390, 429, 570, 654, 666, 726
BssNAI	GTATAC	2 cut(s)	73, 361
BssNI	GRCGYC	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	198, 407
Bst1107I	GTATAC	2 cut(s)	73, 361
Bst2UI	CCWGG	1 cut(s)	452
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	4 cut(s)	173, 284, 977, 983
BstACI	GRCGYC	1 cut(s)	246
BstAFI	CTTAAG	1 cut(s)	842
BstAUI	TGTACA	2 cut(s)	342, 594
BstBAI	YACGTR	1 cut(s)	1063
BstC8I	GCNNGC	3 cut(s)	226, 355, 622
BstDEI	CTNAG	4 cut(s)	32, 502, 686, 936
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	6 cut(s)	162, 180, 784, 788, 867, 946
BstFNI	CGCG	1 cut(s)	423
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	2 cut(s)	197, 423
BstKTI	GATC	8 cut(s)	117, 180, 393, 432, 573, 657, 669, 729
BstMAI	GTCTC	6 cut(s)	41, 160, 205, 522, 634, 909
BstMBI	GATC	8 cut(s)	114, 177, 390, 429, 570, 654, 666, 726
BstMWI	GCNNNNNNNGC	1 cut(s)	810
BstNI	CCWGG	1 cut(s)	452
BstNSI	RCATGY	2 cut(s)	357, 700
BstSCI	CCNGG	1 cut(s)	450
BstSLI	GKGCMC	1 cut(s)	446
BstSNI	TACGTA	1 cut(s)	1063
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	4 cut(s)	274, 822, 825, 1015
BstXI	CCANNNNNNTGG	1 cut(s)	414
BstZ17I	GTATAC	2 cut(s)	73, 361
BsuRI	GGCC	4 cut(s)	537, 662, 707, 881
BtgI	CCRYGG	1 cut(s)	336
BtgZI	GCGATG	1 cut(s)	334
BtsCI	GGATG	6 cut(s)	162, 180, 784, 788, 867, 946
Cac8I	GCNNGC	3 cut(s)	226, 355, 622
CciI	TCATGA	1 cut(s)	393
CfoI	GCGC	2 cut(s)	197, 423
Cfr13I	GGNCC	1 cut(s)	880
Csp6I	GTAC	3 cut(s)	343, 577, 595
CviAII	CATG	8 cut(s)	148, 304, 354, 394, 598, 664, 697, 1073
CviQI	GTAC	3 cut(s)	343, 577, 595
DdeI	CTNAG	4 cut(s)	32, 502, 686, 936
DpnI	GATC	8 cut(s)	116, 179, 392, 431, 572, 656, 668, 728
DpnII	GATC	8 cut(s)	114, 177, 390, 429, 570, 654, 666, 726
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
Eam1104I	CTCTTC	4 cut(s)	173, 284, 977, 983
EarI	CTCTTC	4 cut(s)	173, 284, 977, 983
EciI	GGCGGA	1 cut(s)	322
Eco105I	TACGTA	1 cut(s)	1063
Eco130I	CCWWGG	2 cut(s)	198, 407
Eco31I	GGTCTC	1 cut(s)	205
Eco57I	CTGAAG	6 cut(s)	76, 157, 298, 950, 973, 1041
Eco88I	CYCGRG	3 cut(s)	369, 896, 950
EcoRII	CCWGG	1 cut(s)	450
EcoT14I	CCWWGG	2 cut(s)	198, 407
ErhI	CCWWGG	2 cut(s)	198, 407
Esp3I	CGTCTC	1 cut(s)	522
FaeI	CATG	8 cut(s)	151, 307, 357, 397, 601, 667, 700, 1076
FatI	CATG	8 cut(s)	147, 303, 353, 393, 597, 663, 696, 1072
FauNDI	CATATG	1 cut(s)	1033
FbaI	TGATCA	2 cut(s)	429, 666
FblI	GTMKAC	3 cut(s)	72, 360, 1013
Fnu4HI	GCNGC	7 cut(s)	288, 535, 705, 836, 839, 1026, 1029
FokI	GGATG	6 cut(s)	149, 167, 791, 795, 854, 953
Fsp4HI	GCNGC	7 cut(s)	288, 535, 705, 836, 839, 1026, 1029
FspBI	CTAG	1 cut(s)	621
GlaI	GCGC	2 cut(s)	196, 422
GluI	GCNGC	7 cut(s)	288, 535, 705, 836, 839, 1026, 1029
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	4 cut(s)	537, 662, 707, 881
HapII	CCGG	1 cut(s)	385
HhaI	GCGC	2 cut(s)	197, 423
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	8 cut(s)	151, 307, 357, 397, 601, 667, 700, 1076
Hin6I	GCGC	2 cut(s)	195, 421
HinP1I	GCGC	2 cut(s)	195, 421
HincII	GTYRAC	1 cut(s)	1014
HindII	GTYRAC	1 cut(s)	1014
HinfI	GANTC	3 cut(s)	56, 850, 1088
HpaII	CCGG	1 cut(s)	385
HphI	GGTGA	4 cut(s)	244, 370, 424, 884
Hpy166II	GTNNAC	7 cut(s)	73, 343, 345, 361, 444, 595, 1014
Hpy188I	TCNGA	4 cut(s)	491, 689, 930, 1021
Hpy188III	TCNNGA	7 cut(s)	175, 371, 385, 394, 415, 670, 724
Hpy8I	GTNNAC	7 cut(s)	73, 343, 345, 361, 444, 595, 1014
Hpy99I	CGWCG	2 cut(s)	527, 880
HpyAV	CCTTC	4 cut(s)	280, 391, 445, 553
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	4 cut(s)	246, 744, 875, 1062
HpyCH4V	TGCA	3 cut(s)	25, 444, 1031
HpyF10VI	GCNNNNNNNGC	1 cut(s)	810
HpyF3I	CTNAG	4 cut(s)	32, 502, 686, 936
HpySE526I	ACGT	4 cut(s)	246, 744, 875, 1062
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	8 cut(s)	151, 307, 357, 397, 601, 667, 700, 1076
HspAI	GCGC	2 cut(s)	195, 421
Kpn2I	TCCGGA	1 cut(s)	384
Ksp22I	TGATCA	2 cut(s)	429, 666
Kzo9I	GATC	8 cut(s)	114, 177, 390, 429, 570, 654, 666, 726
LguI	GCTCTTC	1 cut(s)	284
Lsp1109I	GCAGC	4 cut(s)	274, 822, 825, 1015
LweI	GCATC	1 cut(s)	54
MaeI	CTAG	1 cut(s)	621
MaeII	ACGT	4 cut(s)	246, 744, 875, 1062
MaeIII	GTNAC	3 cut(s)	242, 1058, 1089
MalI	GATC	8 cut(s)	116, 179, 392, 431, 572, 656, 668, 728
MbiI	CCGCTC	2 cut(s)	224, 368
MboI	GATC	8 cut(s)	114, 177, 390, 429, 570, 654, 666, 726
MhlI	GDGCHC	1 cut(s)	446
MluCI	AATT	3 cut(s)	492, 1101, 1110
MlyI	GAGTC	1 cut(s)	1097
MmeI	TCCRAC	3 cut(s)	183, 469, 618
MroI	TCCGGA	1 cut(s)	384
MseI	TTAA	1 cut(s)	843
MslI	CAYNNNNRTG	1 cut(s)	302
MspCI	CTTAAG	1 cut(s)	842
MspI	CCGG	1 cut(s)	385
MspR9I	CCNGG	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	452
MvnI	CGCG	1 cut(s)	423
MwoI	GCNNNNNNNGC	1 cut(s)	810
NdeI	CATATG	1 cut(s)	1033
NdeII	GATC	8 cut(s)	114, 177, 390, 429, 570, 654, 666, 726
NheI	GCTAGC	1 cut(s)	620
NlaIII	CATG	8 cut(s)	151, 307, 357, 397, 601, 667, 700, 1076
NmuCI	GTSAC	2 cut(s)	242, 1089
NspI	RCATGY	2 cut(s)	357, 700
PaeI	GCATGC	1 cut(s)	357
PaeR7I	CTCGAG	2 cut(s)	896, 950
PagI	TCATGA	1 cut(s)	393
PciI	ACATGT	1 cut(s)	696
PciSI	GCTCTTC	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	884
PfeI	GAWTC	2 cut(s)	56, 850
PflMI	CCANNNNNTGG	1 cut(s)	609
PkrI	GCNGC	7 cut(s)	289, 536, 706, 837, 840, 1027, 1030
PleI	GAGTC	1 cut(s)	1096
PpsI	GAGTC	1 cut(s)	1096
Ppu21I	YACGTR	1 cut(s)	1063
PscI	ACATGT	1 cut(s)	696
Psp6I	CCWGG	1 cut(s)	450
PspGI	CCWGG	1 cut(s)	450
PspPI	GGNCC	1 cut(s)	880
PspXI	VCTCGAGB	2 cut(s)	896, 950
RsaI	GTAC	3 cut(s)	344, 578, 596
RsaNI	GTAC	3 cut(s)	343, 577, 595
RseI	CAYNNNNRTG	1 cut(s)	302
SalI	GTCGAC	1 cut(s)	1012
SapI	GCTCTTC	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	843
SatI	GCNGC	7 cut(s)	288, 535, 705, 836, 839, 1026, 1029
Sau3AI	GATC	8 cut(s)	114, 177, 390, 429, 570, 654, 666, 726
Sau96I	GGNCC	1 cut(s)	880
SchI	GAGTC	1 cut(s)	1097
ScrFI	CCNGG	1 cut(s)	452
SduI	GDGCHC	1 cut(s)	446
SfaNI	GCATC	1 cut(s)	54
Sfr274I	CTCGAG	2 cut(s)	896, 950
SlaI	CTCGAG	2 cut(s)	896, 950
SmiMI	CAYNNNNRTG	1 cut(s)	302
SmlI	CTYRAG	3 cut(s)	842, 896, 950
SmoI	CTYRAG	3 cut(s)	842, 896, 950
SnaBI	TACGTA	1 cut(s)	1063
SphI	GCATGC	1 cut(s)	357
Sse9I	AATT	3 cut(s)	492, 1101, 1110
SsiI	CCGC	6 cut(s)	222, 333, 366, 534, 704, 1025
SspMI	CTAG	1 cut(s)	621
StyD4I	CCNGG	1 cut(s)	450
StyI	CCWWGG	2 cut(s)	198, 407
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	4 cut(s)	249, 747, 878, 1065
TaqI	TCGA	3 cut(s)	897, 951, 1013
TasI	AATT	3 cut(s)	492, 1101, 1110
TatI	WGTACW	2 cut(s)	342, 594
TauI	GCSGC	3 cut(s)	537, 707, 1028
TfiI	GAWTC	2 cut(s)	56, 850
Tru1I	TTAA	1 cut(s)	843
Tru9I	TTAA	1 cut(s)	843
TseFI	GTSAC	2 cut(s)	242, 1089
TseI	GCWGC	4 cut(s)	287, 835, 838, 1028
Tsp45I	GTSAC	2 cut(s)	242, 1089
TspDTI	ATGAA	5 cut(s)	121, 538, 747, 994, 1050
TspGWI	ACGGA	1 cut(s)	540
Van91I	CCANNNNNTGG	1 cut(s)	609
Vha464I	CTTAAG	1 cut(s)	842
VneI	GTGCAC	1 cut(s)	442
XceI	RCATGY	2 cut(s)	357, 700
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XhoI	CTCGAG	2 cut(s)	896, 950
XmiI	GTMKAC	3 cut(s)	72, 360, 1013
XspI	CTAG	1 cut(s)	621
ZraI	GACGTC	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.