Rh6BG225000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008118
Physical Location & Seq
Forward (+)
42548698 .. 42550179
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG225000.1

Sequence Viewer

Length: 1011 bp
ATGGATAGGGAACAAGATGAGTTGCAGTTCCTTGGTCTCTTTGGCATCTACAAAGAATCATATAAGATTGTATACAAATGGAGAAAAATCTTCAGCCAAATCAGCTTGACCTTGATCCTCCCTTTGAGCTTCATCTTCTTGGCTCACATAGAAGTCTCCGACATCCTCTTCTCCAGGATCCTCCGGAGCGAATATGCCTTGGACGAAACGAGACCATACAGCCCTCTCTACAAGAGAACAAACGACCTCATCACCAAAGAATGGGTAACCTTCTGGCTCTTCAAGGCTGCTTACTTCACTGCCATGCTCATCTTCGGCCTCCTTTCCACCTCCGCCGTGGTATACACCATCGCATGCGTATACACCGCCCGGGAAATCACCTTCCGAAAGATCATGAGCGTCGTCCCAAGGGTCTGGAAGCGCGTGATGATCACCTTCTTGTGCACCTTCCTGGCTTTCTTCCTCTACAACGTAGTGGCAACAGTAGTAGTCGTAATTGTTTGGTTAGCTCTCTTATACAGCACACGCGGAGACGGCCACGTCTTCGTCATAATTGGTATCTTTTTATTGATCTTGTACGCTGTTGGGTTCGTGTACATGACCATAATCTGGCAACTGGCTAGCGTCGTCTCGGTGTTGGAAGAAACGAAAGGGATCAAAGCCATGATCAAGAGCAAGAAGCTACTCAGAGGGAACATGTGGGTGGTCTCAATCATCTTCATCAAGATCATTGCTTTAGCCTACGTTATTCAGTTTTCATTTCAAGCATTGGTTGTGGATGGATGGGTGTTTGGGATAATGGGCAGGATAGGCTTCGGTGTTCTCTTTTTGTTGTTGCTGCTTAAGTTGATTCTGTTTTTGCTGGTCATCCAAACGGTGCTTTATTTCGTCTGCAAATCGTACCACCATGAAAACATTGACAAGTCAGCTCTATCGGATCACCTCGAGGTTATTTATCTGGGAGACTATGTTCCTCTGAAATCTAAGGATGTTCAGCTTGAGCAGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

38.9

Weight (kDa)

9.28

Isoelectric Point (pI)

28.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 539
AbsI CCTCGAGG 1 cut(s) 944
Acc36I ACCTGC 1 cut(s) 994
AccB7I CCANNNNNTGG 2 cut(s) 261, 609
AccI GTMKAC 3 cut(s) 72, 342, 360
AccII CGCG 2 cut(s) 423, 528
AccIII TCCGGA 1 cut(s) 183
AciI CCGC 3 cut(s) 333, 366, 528
AclWI GGATC 5 cut(s) 109, 172, 185, 662, 945
AcoI YGGCCR 1 cut(s) 535
AcuI CTGAAG 1 cut(s) 76
AfaI GTAC 3 cut(s) 578, 596, 902
AfiI CCNNNNNNNGG 2 cut(s) 261, 609
AflII CTTAAG 1 cut(s) 842
AflIII ACRYGT 1 cut(s) 696
AgsI TTSAA 2 cut(s) 283, 764
AjiI CACGTC 1 cut(s) 541
AjnI CCWGG 2 cut(s) 173, 450
AloI GAACNNNNNNTCC 2 cut(s) 954, 986
AluBI AGCT 6 cut(s) 105, 129, 509, 682, 929, 997
AluI AGCT 6 cut(s) 105, 129, 509, 682, 929, 997
Alw21I GWGCWC 1 cut(s) 446
Alw26I GTCTC 7 cut(s) 41, 160, 205, 525, 634, 712, 957
Alw44I GTGCAC 1 cut(s) 442
AlwI GGATC 5 cut(s) 109, 172, 185, 662, 945
Ama87I CYCGRG 2 cut(s) 369, 944
Aor13HI TCCGGA 1 cut(s) 183
AoxI GGCC 2 cut(s) 316, 535
ApaLI GTGCAC 1 cut(s) 442
ApeKI GCWGC 2 cut(s) 287, 838
AspLEI GCGC 1 cut(s) 423
AsuC2I CCSGG 2 cut(s) 370, 371
AsuHPI GGTGA 4 cut(s) 244, 370, 424, 932
AsuNHI GCTAGC 1 cut(s) 620
AvaI CYCGRG 2 cut(s) 369, 944
BaeGI GKGCMC 1 cut(s) 446
BamHI GGATCC 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 535
Bbv12I GWGCWC 1 cut(s) 446
BbvI GCAGC 2 cut(s) 274, 825
BccI CCATC 3 cut(s) 356, 773, 777
BceAI ACGGC 2 cut(s) 320, 550
BciT130I CCWGG 2 cut(s) 175, 452
BclI TGATCA 2 cut(s) 429, 666
BcnI CCSGG 2 cut(s) 370, 371
BcoDI GTCTC 7 cut(s) 41, 160, 205, 525, 634, 712, 957
BfaI CTAG 1 cut(s) 621
BfrI CTTAAG 1 cut(s) 842
BfuAI ACCTGC 1 cut(s) 994
BisI GCNGC 2 cut(s) 288, 839
BlsI GCNGC 2 cut(s) 289, 840
Bme1390I CCNGG 4 cut(s) 175, 370, 371, 452
BmeT110I CYCGRG 2 cut(s) 369, 944
BmgBI CACGTC 1 cut(s) 541
BmiI GGNNCC 1 cut(s) 179
BmrFI CCNGG 4 cut(s) 175, 370, 371, 452
BmsI GCATC 1 cut(s) 54
BmtI GCTAGC 1 cut(s) 624
BpiI GAAGAC 1 cut(s) 535
BpmI CTGGAG 1 cut(s) 157
BpuMI CCSGG 2 cut(s) 370, 371
BsaI GGTCTC 3 cut(s) 41, 205, 712
BsaJI CCNNGG 5 cut(s) 31, 198, 336, 369, 407
BsaWI WCCGGW 1 cut(s) 183
BsaXI ACNNNNNCTCC 2 cut(s) 954, 984
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 609
Bse1I ACTGG 1 cut(s) 621
Bse3DI GCAATG 1 cut(s) 729
BseAI TCCGGA 1 cut(s) 183
BseBI CCWGG 2 cut(s) 175, 452
BseDI CCNNGG 5 cut(s) 31, 198, 336, 369, 407
BseGI GGATG 5 cut(s) 162, 784, 788, 867, 994
BseLI CCNNNNNNNGG 2 cut(s) 261, 609
BseMI GCAATG 1 cut(s) 729
BseMII CTCAG 1 cut(s) 700
BseNI ACTGG 1 cut(s) 621
BseSI GKGCMC 1 cut(s) 446
BseXI GCAGC 2 cut(s) 274, 825
Bsh1236I CGCG 2 cut(s) 423, 528
BshFI GGCC 2 cut(s) 318, 537
BsiHKAI GWGCWC 1 cut(s) 446
BsiHKCI CYCGRG 2 cut(s) 369, 944
BsiSI CCGG 2 cut(s) 184, 370
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 2 cut(s) 261, 609
BsmAI GTCTC 7 cut(s) 41, 160, 205, 525, 634, 712, 957
BsmBI CGTCTC 2 cut(s) 525, 634
BsmFI GGGAC 1 cut(s) 389
BsnI GGCC 2 cut(s) 318, 537
Bso31I GGTCTC 3 cut(s) 41, 205, 712
BsoBI CYCGRG 2 cut(s) 369, 944
Bsp1286I GDGCHC 1 cut(s) 446
Bsp13I TCCGGA 1 cut(s) 183
Bsp1407I TGTACA 1 cut(s) 594
Bsp143I GATC 9 cut(s) 114, 177, 390, 429, 570, 654, 666, 726, 937
BspACI CCGC 3 cut(s) 333, 366, 528
BspANI GGCC 2 cut(s) 318, 537
BspCNI CTCAG 1 cut(s) 699
BspEI TCCGGA 1 cut(s) 183
BspFNI CGCG 2 cut(s) 423, 528
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 1 cut(s) 179
BspMI ACCTGC 1 cut(s) 994
BspOI GCTAGC 1 cut(s) 624
BspPI GGATC 5 cut(s) 109, 172, 185, 662, 945
BspQI GCTCTTC 1 cut(s) 284
BspTI CTTAAG 1 cut(s) 842
BspTNI GGTCTC 3 cut(s) 41, 205, 712
BsrDI GCAATG 1 cut(s) 729
BsrGI TGTACA 1 cut(s) 594
BsrI ACTGG 1 cut(s) 621
BssECI CCNNGG 5 cut(s) 31, 198, 336, 369, 407
BssMI GATC 9 cut(s) 114, 177, 390, 429, 570, 654, 666, 726, 937
BssNAI GTATAC 3 cut(s) 73, 343, 361
BssT1I CCWWGG 3 cut(s) 31, 198, 407
Bst1107I GTATAC 3 cut(s) 73, 343, 361
Bst2UI CCWGG 2 cut(s) 175, 452
Bst4CI ACNGT 2 cut(s) 484, 877
Bst6I CTCTTC 2 cut(s) 173, 284
BstAFI CTTAAG 1 cut(s) 842
BstAUI TGTACA 1 cut(s) 594
BstC8I GCNNGC 2 cut(s) 355, 622
BstDEI CTNAG 2 cut(s) 686, 984
BstDSI CCRYGG 1 cut(s) 336
BstEII GGTNACC 1 cut(s) 265
BstF5I GGATG 5 cut(s) 162, 784, 788, 867, 994
BstFNI CGCG 2 cut(s) 423, 528
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 9 cut(s) 117, 180, 393, 432, 573, 657, 669, 729, 940
BstMAI GTCTC 7 cut(s) 41, 160, 205, 525, 634, 712, 957
BstMBI GATC 9 cut(s) 114, 177, 390, 429, 570, 654, 666, 726, 937
BstMWI GCNNNNNNNGC 3 cut(s) 102, 534, 810
BstNI CCWGG 2 cut(s) 175, 452
BstNSI RCATGY 2 cut(s) 357, 700
BstPI GGTNACC 1 cut(s) 265
BstSCI CCNGG 4 cut(s) 173, 368, 369, 450
BstSLI GKGCMC 1 cut(s) 446
BstUI CGCG 2 cut(s) 423, 528
BstV1I GCAGC 2 cut(s) 274, 825
BstV2I GAAGAC 1 cut(s) 535
BstX2I RGATCY 1 cut(s) 177
BstXI CCANNNNNNTGG 1 cut(s) 414
BstYI RGATCY 1 cut(s) 177
BstZ17I GTATAC 3 cut(s) 73, 343, 361
BsuRI GGCC 2 cut(s) 318, 537
BtgI CCRYGG 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 334
BtrI CACGTC 1 cut(s) 541
BtsCI GGATG 5 cut(s) 162, 784, 788, 867, 994
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 297
BveI ACCTGC 1 cut(s) 994
Cac8I GCNNGC 2 cut(s) 355, 622
CciI TCATGA 1 cut(s) 393
CfoI GCGC 1 cut(s) 423
Cfr9I CCCGGG 1 cut(s) 369
CseI GACGC 2 cut(s) 388, 613
Csp6I GTAC 3 cut(s) 577, 595, 901
CviAII CATG 7 cut(s) 304, 354, 394, 598, 664, 697, 908
CviQI GTAC 3 cut(s) 577, 595, 901
DdeI CTNAG 2 cut(s) 686, 984
DpnI GATC 9 cut(s) 116, 179, 392, 431, 572, 656, 668, 728, 939
DpnII GATC 9 cut(s) 114, 177, 390, 429, 570, 654, 666, 726, 937
DrdI GACNNNNNNGTC 1 cut(s) 539
DseDI GACNNNNNNGTC 1 cut(s) 539
EaeI YGGCCR 1 cut(s) 535
Eam1104I CTCTTC 2 cut(s) 173, 284
EarI CTCTTC 2 cut(s) 173, 284
EciI GGCGGA 1 cut(s) 322
Eco130I CCWWGG 3 cut(s) 31, 198, 407
Eco31I GGTCTC 3 cut(s) 41, 205, 712
Eco57I CTGAAG 1 cut(s) 76
Eco88I CYCGRG 2 cut(s) 369, 944
Eco91I GGTNACC 1 cut(s) 265
EcoO65I GGTNACC 1 cut(s) 265
EcoRII CCWGG 2 cut(s) 173, 450
EcoT14I CCWWGG 3 cut(s) 31, 198, 407
ErhI CCWWGG 3 cut(s) 31, 198, 407
Esp3I CGTCTC 2 cut(s) 525, 634
FaeI CATG 7 cut(s) 307, 357, 397, 601, 667, 700, 911
FaqI GGGAC 1 cut(s) 389
FatI CATG 7 cut(s) 303, 353, 393, 597, 663, 696, 907
FbaI TGATCA 2 cut(s) 429, 666
FblI GTMKAC 3 cut(s) 72, 342, 360
Fnu4HI GCNGC 2 cut(s) 288, 839
FokI GGATG 5 cut(s) 149, 791, 795, 854, 1001
Fsp4HI GCNGC 2 cut(s) 288, 839
FspBI CTAG 1 cut(s) 621
GlaI GCGC 1 cut(s) 422
GluI GCNGC 2 cut(s) 288, 839
GsuI CTGGAG 1 cut(s) 157
HaeIII GGCC 2 cut(s) 318, 537
HapII CCGG 2 cut(s) 184, 370
HgaI GACGC 2 cut(s) 388, 613
HhaI GCGC 1 cut(s) 423
Hin1II CATG 7 cut(s) 307, 357, 397, 601, 667, 700, 911
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HinfI GANTC 2 cut(s) 56, 850
HpaII CCGG 2 cut(s) 184, 370
HphI GGTGA 4 cut(s) 244, 370, 424, 932
Hpy166II GTNNAC 5 cut(s) 73, 343, 361, 444, 595
Hpy188I TCNGA 5 cut(s) 160, 386, 689, 937, 978
Hpy188III TCNNGA 5 cut(s) 184, 394, 415, 670, 724
Hpy8I GTNNAC 5 cut(s) 73, 343, 361, 444, 595
Hpy99I CGWCG 2 cut(s) 404, 629
HpyAV CCTTC 4 cut(s) 280, 391, 445, 457
HpyCH4III ACNGT 2 cut(s) 484, 877
HpyCH4IV ACGT 3 cut(s) 471, 540, 744
HpyCH4V TGCA 3 cut(s) 25, 444, 894
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 534, 810
HpyF3I CTNAG 2 cut(s) 686, 984
HpySE526I ACGT 3 cut(s) 471, 540, 744
Hsp92II CATG 7 cut(s) 307, 357, 397, 601, 667, 700, 911
HspAI GCGC 1 cut(s) 421
Kpn2I TCCGGA 1 cut(s) 183
Ksp22I TGATCA 2 cut(s) 429, 666
Kzo9I GATC 9 cut(s) 114, 177, 390, 429, 570, 654, 666, 726, 937
LguI GCTCTTC 1 cut(s) 284
LmnI GCTCC 1 cut(s) 186
Lsp1109I GCAGC 2 cut(s) 274, 825
LweI GCATC 1 cut(s) 54
MaeI CTAG 1 cut(s) 621
MaeII ACGT 3 cut(s) 471, 540, 744
MaeIII GTNAC 1 cut(s) 265
MalI GATC 9 cut(s) 116, 179, 392, 431, 572, 656, 668, 728, 939
MboI GATC 9 cut(s) 114, 177, 390, 429, 570, 654, 666, 726, 937
MboII GAAGA 9 cut(s) 82, 127, 160, 271, 304, 451, 535, 653, 709
MflI RGATCY 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 446
MluCI AATT 2 cut(s) 495, 552
MmeI TCCRAC 2 cut(s) 183, 618
MroI TCCGGA 1 cut(s) 183
MseI TTAA 2 cut(s) 843, 1009
MslI CAYNNNNRTG 2 cut(s) 302, 701
MspCI CTTAAG 1 cut(s) 842
MspI CCGG 2 cut(s) 184, 370
MspR9I CCNGG 4 cut(s) 175, 370, 371, 452
MvaI CCWGG 2 cut(s) 175, 452
MvnI CGCG 2 cut(s) 423, 528
MwoI GCNNNNNNNGC 3 cut(s) 102, 534, 810
NciI CCSGG 2 cut(s) 370, 371
NdeII GATC 9 cut(s) 114, 177, 390, 429, 570, 654, 666, 726, 937
NheI GCTAGC 1 cut(s) 620
NlaIII CATG 7 cut(s) 307, 357, 397, 601, 667, 700, 911
NlaIV GGNNCC 1 cut(s) 179
NspI RCATGY 2 cut(s) 357, 700
PaeI GCATGC 1 cut(s) 357
PaeR7I CTCGAG 1 cut(s) 944
PagI TCATGA 1 cut(s) 393
PciI ACATGT 1 cut(s) 696
PciSI GCTCTTC 1 cut(s) 284
PfeI GAWTC 2 cut(s) 56, 850
PflMI CCANNNNNTGG 2 cut(s) 261, 609
PfoI TCCNGGA 1 cut(s) 173
PkrI GCNGC 2 cut(s) 289, 840
PscI ACATGT 1 cut(s) 696
Psp6I CCWGG 2 cut(s) 173, 450
PspEI GGTNACC 1 cut(s) 265
PspGI CCWGG 2 cut(s) 173, 450
PspN4I GGNNCC 1 cut(s) 179
PspXI VCTCGAGB 1 cut(s) 944
PsuI RGATCY 1 cut(s) 177
RsaI GTAC 3 cut(s) 578, 596, 902
RsaNI GTAC 3 cut(s) 577, 595, 901
RseI CAYNNNNRTG 2 cut(s) 302, 701
SapI GCTCTTC 1 cut(s) 284
SaqAI TTAA 2 cut(s) 843, 1009
SatI GCNGC 2 cut(s) 288, 839
Sau3AI GATC 9 cut(s) 114, 177, 390, 429, 570, 654, 666, 726, 937
ScrFI CCNGG 4 cut(s) 175, 370, 371, 452
SduI GDGCHC 1 cut(s) 446
SfaNI GCATC 1 cut(s) 54
Sfr274I CTCGAG 1 cut(s) 944
SlaI CTCGAG 1 cut(s) 944
SmaI CCCGGG 1 cut(s) 371
SmiMI CAYNNNNRTG 2 cut(s) 302, 701
SmlI CTYRAG 3 cut(s) 842, 944, 998
SmoI CTYRAG 3 cut(s) 842, 944, 998
SphI GCATGC 1 cut(s) 357
Sse9I AATT 2 cut(s) 495, 552
SsiI CCGC 3 cut(s) 333, 366, 528
SspMI CTAG 1 cut(s) 621
StyD4I CCNGG 4 cut(s) 173, 368, 369, 450
StyI CCWWGG 3 cut(s) 31, 198, 407
TaaI ACNGT 2 cut(s) 484, 877
TaiI ACGT 3 cut(s) 474, 543, 747
TaqI TCGA 1 cut(s) 945
TasI AATT 2 cut(s) 495, 552
TatI WGTACW 1 cut(s) 594
TfiI GAWTC 2 cut(s) 56, 850
Tru1I TTAA 2 cut(s) 843, 1009
Tru9I TTAA 2 cut(s) 843, 1009
TscAI CASTG 1 cut(s) 304
TseI GCWGC 2 cut(s) 287, 838
TspDTI ATGAA 4 cut(s) 121, 709, 747, 924
TspMI CCCGGG 1 cut(s) 369
TspRI CASTG 1 cut(s) 304
Van91I CCANNNNNTGG 2 cut(s) 261, 609
Vha464I CTTAAG 1 cut(s) 842
VneI GTGCAC 1 cut(s) 442
XceI RCATGY 2 cut(s) 357, 700
XcmI CCANNNNNNNNNTGG 1 cut(s) 334
XhoI CTCGAG 1 cut(s) 944
XmaI CCCGGG 1 cut(s) 369
XmiI GTMKAC 3 cut(s) 72, 342, 360
XspI CTAG 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.