Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008118

Physical Location & Seq

Genomic Coordinates Reverse (-)

757140 .. 758132

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGATAGAGAACAAGATGAATTACAATTTCTTGGGATTTTTGGCATCTACAAAGAAGCCTACAAAATTGTGTTTTCATGGAGAAAAATCTTCAGCCAAATCACCTTAGCCTTGATCCTCCCTCTGAGCTTCATATTCTTGGCGCAATTAGAACTCTCAAACATCCTTCTCTCAAAGATCATCAGGAACGAAATAGCCCTTGATGGAACAAGCACCAACAATCCAAGGTATGAAAAAATATCAGATGTCATATCCTCCGAGTGGGCAACCTTTTGGCTTTTCAAAGCTGCATACTTCACCTTCTTGCTCATCTTCGGCCTCCTCTCCACCTCTGCCGTTGTATACACGATCGCGTGTATATACACGGCGAAAGAAATCACATTCAAGAAGGTGATGAGCGTCGTCCCAAAAGTTTGGAAGCGAGTCATGGTCACGTTCCTGTGCACTTTCTTGGCTTTCTTTTGCTACAATATAGTGGCTTTCCTAGTCCTAATTATTTGGTTACTTTCGATGGGCAACAGTGATGCCGGTGTTATAATTGGGTTTTTTCTACTCATTGTTTACTTCATAGGATTTGTTTACTTAACCCTAATCTGGCAGCTGGCTAGCGTGGTCTCAGTTCTTGAAGAAGCAAGGGGGATCGAAGCCATGGCGAAGAGCAAGGCACTACTAAAAGGAAATATGTGGGTGGCTTCTATCATATTCTTTAAGCTCAACGTTTTGGCCGCCCTCCTACAATTTGGGTTTCAACAACTAGTTGTGCGAGGAAGGTCATTTGGTGTGATTGACAGAGTAGCTTATGGAGTTATATGCTTGTTGTTGCTTTTCAAGTTGATTTTGTTTGGTCTTGTAATCCAAACTGTGCTCTATTTCGTTTGCAAGTCGTACCACCATGAAAACATCGACAAATCGGCGTTATCTGATCACCTTGAGGTCTATCTGGGAGATTATGTGCCTCTCAGATCTAAGGATGTTCAGCTTGAGCAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

331

Amino Acids

37.68

Weight (kDa)

8.82

Isoelectric Point (pI)

26.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15070
malus_domestica	MD05G1011000.v1.1 MD10G1010500.v1.1 MD10G1010700.v1.1
prunus_persica	Prupe.8G014200_v2.0.a1
pyrus_communis	pycom05g00620 pycom10g00680
rosa_chinensis	RchiOBHm_Chr6g0277711 RchiOBHm_Chr6g0277721
rosa_laevigata	RLG00000013280 RLG00000013281
rosa_multiflora	Rmu_sc0007109.1_g000007 Rmu_sc0007109.1_g000008 Rmu_sc0007109.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191010 Rroxscaffold_7G00191030
rosa_rugosa	Rorug06G0110500 Rorug06G0110500
rosa_samantha	Rh6BG225000 Rh6CG227400 Rh6DG218100 Rh6DG218200
rosa_wichuraiana	Rw6G019360 Rw6G019370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	536
AccI	GTMKAC	1 cut(s)	342
AccII	CGCG	1 cut(s)	353
AciI	CCGC	1 cut(s)	726
AclI	AACGTT	1 cut(s)	717
AclWI	GGATC	2 cut(s)	109, 647
AcoI	YGGCCR	1 cut(s)	723
AcuI	CTGAAG	1 cut(s)	76
AfaI	GTAC	1 cut(s)	887
AfiI	CCNNNNNNNGG	2 cut(s)	261, 594
AgsI	TTSAA	5 cut(s)	283, 385, 626, 749, 829
AhlI	ACTAGT	1 cut(s)	754
AluBI	AGCT	6 cut(s)	129, 287, 601, 712, 797, 979
AluI	AGCT	6 cut(s)	129, 287, 601, 712, 797, 979
Alw21I	GWGCWC	2 cut(s)	446, 867
Alw26I	GTCTC	1 cut(s)	619
Alw44I	GTGCAC	1 cut(s)	442
AlwI	GGATC	2 cut(s)	109, 647
AoxI	GGCC	2 cut(s)	316, 723
ApaLI	GTGCAC	1 cut(s)	442
ApeKI	GCWGC	2 cut(s)	287, 598
AspLEI	GCGC	1 cut(s)	145
AsuHPI	GGTGA	4 cut(s)	94, 289, 403, 917
AsuNHI	GCTAGC	1 cut(s)	605
BaeGI	GKGCMC	1 cut(s)	446
Bbv12I	GWGCWC	2 cut(s)	446, 867
BbvI	GCAGC	2 cut(s)	274, 610
BccI	CCATC	2 cut(s)	197, 505
BceAI	ACGGC	2 cut(s)	320, 381
BclI	TGATCA	1 cut(s)	922
BcoDI	GTCTC	1 cut(s)	619
BcuI	ACTAGT	1 cut(s)	754
BfaI	CTAG	3 cut(s)	485, 606, 755
BglII	AGATCT	1 cut(s)	962
BisI	GCNGC	3 cut(s)	288, 599, 726
BlsI	GCNGC	3 cut(s)	289, 600, 727
BmsI	GCATC	2 cut(s)	54, 514
BmtI	GCTAGC	1 cut(s)	609
Bpu10I	CCTNAGC	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	950
BsaI	GGTCTC	1 cut(s)	619
BsaJI	CCNNGG	2 cut(s)	224, 648
BsaXI	ACNNNNNCTCC	2 cut(s)	936, 966
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 594
Bse118I	RCCGGY	1 cut(s)	527
BseDI	CCNNGG	2 cut(s)	224, 648
BseGI	GGATG	2 cut(s)	162, 976
BseLI	CCNNNNNNNGG	2 cut(s)	261, 594
BseMII	CTCAG	3 cut(s)	116, 630, 973
BseRI	GAGGAG	1 cut(s)	311
BseSI	GKGCMC	1 cut(s)	446
BseXI	GCAGC	2 cut(s)	274, 610
Bsh1236I	CGCG	1 cut(s)	353
Bsh1285I	CGRYCG	1 cut(s)	351
BshFI	GGCC	2 cut(s)	318, 725
BsiEI	CGRYCG	1 cut(s)	351
BsiHKAI	GWGCWC	2 cut(s)	446, 867
BsiSI	CCGG	1 cut(s)	528
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	261, 594
BsmAI	GTCTC	1 cut(s)	619
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	2 cut(s)	318, 725
Bso31I	GGTCTC	1 cut(s)	619
Bsp1286I	GDGCHC	2 cut(s)	446, 867
Bsp143I	GATC	6 cut(s)	114, 177, 348, 639, 922, 962
Bsp19I	CCATGG	1 cut(s)	648
BspACI	CCGC	1 cut(s)	726
BspANI	GGCC	2 cut(s)	318, 725
BspCNI	CTCAG	3 cut(s)	117, 629, 972
BspFNI	CGCG	1 cut(s)	353
BspOI	GCTAGC	1 cut(s)	609
BspPI	GGATC	2 cut(s)	109, 647
BspQI	GCTCTTC	1 cut(s)	650
BspTNI	GGTCTC	1 cut(s)	619
BsrFI	RCCGGY	1 cut(s)	527
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	2 cut(s)	224, 648
BssMI	GATC	6 cut(s)	114, 177, 348, 639, 922, 962
BssNAI	GTATAC	1 cut(s)	343
BssT1I	CCWWGG	2 cut(s)	224, 648
Bst1107I	GTATAC	1 cut(s)	343
Bst4CI	ACNGT	2 cut(s)	521, 862
Bst6I	CTCTTC	1 cut(s)	650
BstC8I	GCNNGC	2 cut(s)	603, 607
BstDEI	CTNAG	5 cut(s)	106, 125, 616, 959, 966
BstDSI	CCRYGG	1 cut(s)	648
BstF5I	GGATG	2 cut(s)	162, 976
BstFNI	CGCG	1 cut(s)	353
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	6 cut(s)	117, 180, 351, 642, 925, 965
BstMAI	GTCTC	1 cut(s)	619
BstMBI	GATC	6 cut(s)	114, 177, 348, 639, 922, 962
BstMCI	CGRYCG	1 cut(s)	351
BstSLI	GKGCMC	1 cut(s)	446
BstUI	CGCG	1 cut(s)	353
BstV1I	GCAGC	2 cut(s)	274, 610
BstX2I	RGATCY	1 cut(s)	962
BstXI	CCANNNNNNTGG	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	962
BstZ17I	GTATAC	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	318, 725
BtgI	CCRYGG	1 cut(s)	648
BtsCI	GGATG	2 cut(s)	162, 976
BtsIMutI	CAGTG	1 cut(s)	526
Cac8I	GCNNGC	2 cut(s)	603, 607
CfoI	GCGC	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	527
CseI	GACGC	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	886
CviAII	CATG	4 cut(s)	78, 427, 649, 893
CviQI	GTAC	1 cut(s)	886
DdeI	CTNAG	5 cut(s)	106, 125, 616, 959, 966
DpnI	GATC	6 cut(s)	116, 179, 350, 641, 924, 964
DpnII	GATC	6 cut(s)	114, 177, 348, 639, 922, 962
EaeI	YGGCCR	1 cut(s)	723
Eam1104I	CTCTTC	1 cut(s)	650
EarI	CTCTTC	1 cut(s)	650
Eco130I	CCWWGG	2 cut(s)	224, 648
Eco31I	GGTCTC	1 cut(s)	619
Eco57I	CTGAAG	1 cut(s)	76
EcoT14I	CCWWGG	2 cut(s)	224, 648
ErhI	CCWWGG	2 cut(s)	224, 648
FaeI	CATG	4 cut(s)	81, 430, 652, 896
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	4 cut(s)	77, 426, 648, 892
FbaI	TGATCA	1 cut(s)	922
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	3 cut(s)	288, 599, 726
FokI	GGATG	2 cut(s)	149, 983
Fsp4HI	GCNGC	3 cut(s)	288, 599, 726
FspBI	CTAG	3 cut(s)	485, 606, 755
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	3 cut(s)	288, 599, 726
HaeIII	GGCC	2 cut(s)	318, 725
HapII	CCGG	1 cut(s)	528
HgaI	GACGC	1 cut(s)	388
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	4 cut(s)	81, 430, 652, 896
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HinfI	GANTC	1 cut(s)	423
HpaII	CCGG	1 cut(s)	528
HphI	GGTGA	4 cut(s)	94, 289, 403, 917
Hpy166II	GTNNAC	4 cut(s)	343, 444, 562, 580
Hpy188I	TCNGA	5 cut(s)	126, 244, 259, 922, 962
Hpy188III	TCNNGA	3 cut(s)	184, 385, 623
Hpy8I	GTNNAC	4 cut(s)	343, 444, 562, 580
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	4 cut(s)	176, 310, 382, 762
HpyCH4III	ACNGT	2 cut(s)	521, 862
HpyCH4IV	ACGT	2 cut(s)	434, 717
HpyCH4V	TGCA	3 cut(s)	290, 444, 879
HpyF3I	CTNAG	5 cut(s)	106, 125, 616, 959, 966
HpySE526I	ACGT	2 cut(s)	434, 717
Hsp92II	CATG	4 cut(s)	81, 430, 652, 896
HspAI	GCGC	1 cut(s)	143
Ksp22I	TGATCA	1 cut(s)	922
Kzo9I	GATC	6 cut(s)	114, 177, 348, 639, 922, 962
LguI	GCTCTTC	1 cut(s)	650
LpnPI	CCDG	6 cut(s)	169, 452, 541, 580, 587, 926
Lsp1109I	GCAGC	2 cut(s)	274, 610
LweI	GCATC	2 cut(s)	54, 514
MaeI	CTAG	3 cut(s)	485, 606, 755
MaeII	ACGT	2 cut(s)	434, 717
MaeIII	GTNAC	2 cut(s)	430, 501
MalI	GATC	6 cut(s)	116, 179, 350, 641, 924, 964
MboI	GATC	6 cut(s)	114, 177, 348, 639, 922, 962
MboII	GAAGA	4 cut(s)	82, 304, 638, 667
MflI	RGATCY	1 cut(s)	962
MhlI	GDGCHC	2 cut(s)	446, 867
MluCI	AATT	7 cut(s)	20, 26, 66, 146, 492, 537, 737
MlyI	GAGTC	1 cut(s)	432
MseI	TTAA	3 cut(s)	584, 708, 991
MspA1I	CMGCKG	1 cut(s)	601
MspI	CCGG	1 cut(s)	528
MvnI	CGCG	1 cut(s)	353
NcoI	CCATGG	1 cut(s)	648
NdeII	GATC	6 cut(s)	114, 177, 348, 639, 922, 962
NheI	GCTAGC	1 cut(s)	605
NlaIII	CATG	4 cut(s)	81, 430, 652, 896
NmuCI	GTSAC	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	650
PkrI	GCNGC	3 cut(s)	289, 600, 727
Ple19I	CGATCG	1 cut(s)	351
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
PsiI	TTATAA	1 cut(s)	536
Psp1406I	AACGTT	1 cut(s)	717
PsuI	RGATCY	1 cut(s)	962
PvuI	CGATCG	1 cut(s)	351
PvuII	CAGCTG	1 cut(s)	601
RsaI	GTAC	1 cut(s)	887
RsaNI	GTAC	1 cut(s)	886
SapI	GCTCTTC	1 cut(s)	650
SaqAI	TTAA	3 cut(s)	584, 708, 991
SatI	GCNGC	3 cut(s)	288, 599, 726
Sau3AI	GATC	6 cut(s)	114, 177, 348, 639, 922, 962
SchI	GAGTC	1 cut(s)	432
SduI	GDGCHC	2 cut(s)	446, 867
SfaNI	GCATC	2 cut(s)	54, 514
SmlI	CTYRAG	2 cut(s)	929, 980
SmoI	CTYRAG	2 cut(s)	929, 980
SpeI	ACTAGT	1 cut(s)	754
Sse9I	AATT	7 cut(s)	20, 26, 66, 146, 492, 537, 737
SsiI	CCGC	1 cut(s)	726
SspMI	CTAG	3 cut(s)	485, 606, 755
StyI	CCWWGG	2 cut(s)	224, 648
TaaI	ACNGT	2 cut(s)	521, 862
TaiI	ACGT	2 cut(s)	437, 720
TaqI	TCGA	3 cut(s)	509, 642, 903
TasI	AATT	7 cut(s)	20, 26, 66, 146, 492, 537, 737
TauI	GCSGC	1 cut(s)	728
Tru1I	TTAA	3 cut(s)	584, 708, 991
Tru9I	TTAA	3 cut(s)	584, 708, 991
TscAI	CASTG	1 cut(s)	526
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	2 cut(s)	287, 598
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	6 cut(s)	33, 66, 121, 246, 556, 909
TspRI	CASTG	1 cut(s)	526
VneI	GTGCAC	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	342
XspI	CTAG	3 cut(s)	485, 606, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.