Rroxscaffold_7G00191010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0008118
Physical Location & Seq
Reverse (-)
31486336 .. 31487343
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191010.1

Sequence Viewer

Length: 1008 bp
ATGGATAGGGAACAAGATGAGTTGCAGTTCCTTGGTCTCTTTGGCATCTACAAAGAATCCTATAAGATTGTATACAAATGGAGAAAAATCTTCAGCCAAATCAGCTTGACCTTGATCCTCCCTTTGAGCTTCATCTTCTTGGCTCACATAGAAGTCTCCGACATCCTCTTCTCCAGGATCCTCCGGAGCGAATATGCCTTGGACGAAACGAGACCATACAGCCCTCTCTACAAGAGAACAAAAGACCTCATCACCAAAGAATGGGTAACCTTCTGGCTCTTCAAGGCTGCTTACTTCACTTCCATGCTCATCTTCGGCCTCCTTTCCACCTCCGCCGTGGTATACACCATCGCATGCGTATACACCGCCAGGGAAATCACCTTCCGAAAGATCATGAGCGTCGTCCCAAGGGTCTGGAAGCGCGTGATGATCACCTTCTTGTGCACCTTCCTGGCTTTCTTCCTCTACAACGTAGTGGCAACAGTAGTCGTAATTGTTTGGTTAGCTCTCTTATACAGCACACGCGGAGACGGCCACGTCTTCGTCATAACTGGTATCTTTTTATTGATCTTGTTCGCTGTTGGGTTCGTGTACATGACCATAATCTGGCAACTGGCTAGCGTCGTCTCGGTGTTGGAAGAAACGAAAGGGATCAAAGCCATGATCAAGAGCAAGAAGCTACTCAGAGGGAACATGTGGGTGGTCTCAATCATCTTCATCAAGATCATTGCTTTAGCCTACGTTATTCAGTTTTCATTTCAAGCATTGGTTGTGGATGGATGGGTGTTTGGGACAATGGGCAGGATAGGCTTCGGTGTTCTCTTTTTGTTGTTGCTGCTTAAGTTGATTCTGTTTTTGCTGGTCATCCAAACTGTGCTTTATTTCGTCTGCAAATCGTACCACCATGAAAAAATTGACAAGTCAGCTCTATCGGATCACCTCGAGGTTATTTATCTGGGAGACTATGTTCCTCTGAAATCCAAGGATGTTCAGCTTGAGCAGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

335

Amino Acids

38.81

Weight (kDa)

9.4

Isoelectric Point (pI)

26.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 536
AbsI CCTCGAGG 1 cut(s) 941
Acc36I ACCTGC 1 cut(s) 991
AccB7I CCANNNNNTGG 2 cut(s) 261, 606
AccI GTMKAC 3 cut(s) 72, 342, 360
AccII CGCG 2 cut(s) 423, 525
AccIII TCCGGA 1 cut(s) 183
AciI CCGC 3 cut(s) 333, 366, 525
AclWI GGATC 5 cut(s) 109, 172, 185, 659, 942
AcoI YGGCCR 1 cut(s) 532
AcuI CTGAAG 1 cut(s) 76
AfaI GTAC 2 cut(s) 593, 899
AfiI CCNNNNNNNGG 2 cut(s) 261, 606
AflII CTTAAG 1 cut(s) 839
AflIII ACRYGT 1 cut(s) 693
AgsI TTSAA 2 cut(s) 283, 761
AjiI CACGTC 1 cut(s) 538
AjnI CCWGG 3 cut(s) 173, 368, 450
AloI GAACNNNNNNTCC 2 cut(s) 951, 983
AluBI AGCT 6 cut(s) 105, 129, 506, 679, 926, 994
AluI AGCT 6 cut(s) 105, 129, 506, 679, 926, 994
Alw21I GWGCWC 1 cut(s) 446
Alw26I GTCTC 7 cut(s) 41, 160, 205, 522, 631, 709, 954
Alw44I GTGCAC 1 cut(s) 442
AlwI GGATC 5 cut(s) 109, 172, 185, 659, 942
Ama87I CYCGRG 1 cut(s) 941
Aor13HI TCCGGA 1 cut(s) 183
AoxI GGCC 2 cut(s) 316, 532
ApaLI GTGCAC 1 cut(s) 442
ApeKI GCWGC 2 cut(s) 287, 835
AspLEI GCGC 1 cut(s) 423
AsuHPI GGTGA 4 cut(s) 244, 370, 424, 929
AsuNHI GCTAGC 1 cut(s) 617
AvaI CYCGRG 1 cut(s) 941
BaeGI GKGCMC 1 cut(s) 446
BamHI GGATCC 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 532
Bbv12I GWGCWC 1 cut(s) 446
BbvI GCAGC 2 cut(s) 274, 822
BccI CCATC 3 cut(s) 356, 770, 774
BceAI ACGGC 2 cut(s) 320, 547
BciT130I CCWGG 3 cut(s) 175, 370, 452
BclI TGATCA 2 cut(s) 429, 663
BcoDI GTCTC 7 cut(s) 41, 160, 205, 522, 631, 709, 954
BfaI CTAG 1 cut(s) 618
BfrI CTTAAG 1 cut(s) 839
BfuAI ACCTGC 1 cut(s) 991
BisI GCNGC 2 cut(s) 288, 836
BlsI GCNGC 2 cut(s) 289, 837
Bme1390I CCNGG 3 cut(s) 175, 370, 452
BmeT110I CYCGRG 1 cut(s) 941
BmgBI CACGTC 1 cut(s) 538
BmiI GGNNCC 1 cut(s) 179
BmrFI CCNGG 3 cut(s) 175, 370, 452
BmsI GCATC 1 cut(s) 54
BmtI GCTAGC 1 cut(s) 621
BpiI GAAGAC 1 cut(s) 532
BpmI CTGGAG 1 cut(s) 157
BsaI GGTCTC 3 cut(s) 41, 205, 709
BsaJI CCNNGG 6 cut(s) 31, 198, 336, 369, 407, 981
BsaWI WCCGGW 1 cut(s) 183
BsaXI ACNNNNNCTCC 2 cut(s) 951, 981
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 606
Bse1I ACTGG 2 cut(s) 556, 618
Bse3DI GCAATG 1 cut(s) 726
BseAI TCCGGA 1 cut(s) 183
BseBI CCWGG 3 cut(s) 175, 370, 452
BseDI CCNNGG 6 cut(s) 31, 198, 336, 369, 407, 981
BseGI GGATG 5 cut(s) 162, 781, 785, 864, 991
BseLI CCNNNNNNNGG 2 cut(s) 261, 606
BseMI GCAATG 1 cut(s) 726
BseMII CTCAG 1 cut(s) 697
BseNI ACTGG 2 cut(s) 556, 618
BseSI GKGCMC 1 cut(s) 446
BseXI GCAGC 2 cut(s) 274, 822
Bsh1236I CGCG 2 cut(s) 423, 525
BshFI GGCC 2 cut(s) 318, 534
BsiHKAI GWGCWC 1 cut(s) 446
BsiHKCI CYCGRG 1 cut(s) 941
BsiSI CCGG 1 cut(s) 184
BslFI GGGAC 2 cut(s) 389, 805
BslI CCNNNNNNNGG 2 cut(s) 261, 606
BsmAI GTCTC 7 cut(s) 41, 160, 205, 522, 631, 709, 954
BsmBI CGTCTC 2 cut(s) 522, 631
BsmFI GGGAC 2 cut(s) 389, 805
BsnI GGCC 2 cut(s) 318, 534
Bso31I GGTCTC 3 cut(s) 41, 205, 709
BsoBI CYCGRG 1 cut(s) 941
Bsp1286I GDGCHC 1 cut(s) 446
Bsp13I TCCGGA 1 cut(s) 183
Bsp1407I TGTACA 1 cut(s) 591
Bsp143I GATC 9 cut(s) 114, 177, 390, 429, 567, 651, 663, 723, 934
BspACI CCGC 3 cut(s) 333, 366, 525
BspANI GGCC 2 cut(s) 318, 534
BspCNI CTCAG 1 cut(s) 696
BspEI TCCGGA 1 cut(s) 183
BspFNI CGCG 2 cut(s) 423, 525
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 1 cut(s) 179
BspMI ACCTGC 1 cut(s) 991
BspOI GCTAGC 1 cut(s) 621
BspPI GGATC 5 cut(s) 109, 172, 185, 659, 942
BspQI GCTCTTC 1 cut(s) 284
BspTI CTTAAG 1 cut(s) 839
BspTNI GGTCTC 3 cut(s) 41, 205, 709
BsrDI GCAATG 1 cut(s) 726
BsrGI TGTACA 1 cut(s) 591
BsrI ACTGG 2 cut(s) 556, 618
BssECI CCNNGG 6 cut(s) 31, 198, 336, 369, 407, 981
BssMI GATC 9 cut(s) 114, 177, 390, 429, 567, 651, 663, 723, 934
BssNAI GTATAC 3 cut(s) 73, 343, 361
BssT1I CCWWGG 4 cut(s) 31, 198, 407, 981
Bst1107I GTATAC 3 cut(s) 73, 343, 361
Bst2UI CCWGG 3 cut(s) 175, 370, 452
Bst4CI ACNGT 2 cut(s) 484, 874
Bst6I CTCTTC 2 cut(s) 173, 284
BstAFI CTTAAG 1 cut(s) 839
BstAUI TGTACA 1 cut(s) 591
BstC8I GCNNGC 2 cut(s) 355, 619
BstDEI CTNAG 1 cut(s) 683
BstDSI CCRYGG 1 cut(s) 336
BstEII GGTNACC 1 cut(s) 265
BstF5I GGATG 5 cut(s) 162, 781, 785, 864, 991
BstFNI CGCG 2 cut(s) 423, 525
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 9 cut(s) 117, 180, 393, 432, 570, 654, 666, 726, 937
BstMAI GTCTC 7 cut(s) 41, 160, 205, 522, 631, 709, 954
BstMBI GATC 9 cut(s) 114, 177, 390, 429, 567, 651, 663, 723, 934
BstMWI GCNNNNNNNGC 3 cut(s) 102, 531, 807
BstNI CCWGG 3 cut(s) 175, 370, 452
BstNSI RCATGY 2 cut(s) 357, 697
BstPI GGTNACC 1 cut(s) 265
BstSCI CCNGG 3 cut(s) 173, 368, 450
BstSLI GKGCMC 1 cut(s) 446
BstUI CGCG 2 cut(s) 423, 525
BstV1I GCAGC 2 cut(s) 274, 822
BstV2I GAAGAC 1 cut(s) 532
BstX2I RGATCY 1 cut(s) 177
BstXI CCANNNNNNTGG 1 cut(s) 414
BstYI RGATCY 1 cut(s) 177
BstZ17I GTATAC 3 cut(s) 73, 343, 361
BsuRI GGCC 2 cut(s) 318, 534
BtgI CCRYGG 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 334
BtrI CACGTC 1 cut(s) 538
BtsCI GGATG 5 cut(s) 162, 781, 785, 864, 991
BveI ACCTGC 1 cut(s) 991
Cac8I GCNNGC 2 cut(s) 355, 619
CciI TCATGA 1 cut(s) 393
CfoI GCGC 1 cut(s) 423
CseI GACGC 2 cut(s) 388, 610
Csp6I GTAC 2 cut(s) 592, 898
CviAII CATG 7 cut(s) 304, 354, 394, 595, 661, 694, 905
CviQI GTAC 2 cut(s) 592, 898
DdeI CTNAG 1 cut(s) 683
DpnI GATC 9 cut(s) 116, 179, 392, 431, 569, 653, 665, 725, 936
DpnII GATC 9 cut(s) 114, 177, 390, 429, 567, 651, 663, 723, 934
DrdI GACNNNNNNGTC 1 cut(s) 536
DseDI GACNNNNNNGTC 1 cut(s) 536
EaeI YGGCCR 1 cut(s) 532
Eam1104I CTCTTC 2 cut(s) 173, 284
EarI CTCTTC 2 cut(s) 173, 284
EciI GGCGGA 1 cut(s) 322
Eco130I CCWWGG 4 cut(s) 31, 198, 407, 981
Eco31I GGTCTC 3 cut(s) 41, 205, 709
Eco57I CTGAAG 1 cut(s) 76
Eco88I CYCGRG 1 cut(s) 941
Eco91I GGTNACC 1 cut(s) 265
EcoO65I GGTNACC 1 cut(s) 265
EcoRII CCWGG 3 cut(s) 173, 368, 450
EcoT14I CCWWGG 4 cut(s) 31, 198, 407, 981
ErhI CCWWGG 4 cut(s) 31, 198, 407, 981
Esp3I CGTCTC 2 cut(s) 522, 631
FaeI CATG 7 cut(s) 307, 357, 397, 598, 664, 697, 908
FaqI GGGAC 2 cut(s) 389, 805
FatI CATG 7 cut(s) 303, 353, 393, 594, 660, 693, 904
FbaI TGATCA 2 cut(s) 429, 663
FblI GTMKAC 3 cut(s) 72, 342, 360
Fnu4HI GCNGC 2 cut(s) 288, 836
FokI GGATG 5 cut(s) 149, 788, 792, 851, 998
Fsp4HI GCNGC 2 cut(s) 288, 836
FspBI CTAG 1 cut(s) 618
GlaI GCGC 1 cut(s) 422
GluI GCNGC 2 cut(s) 288, 836
GsuI CTGGAG 1 cut(s) 157
HaeIII GGCC 2 cut(s) 318, 534
HapII CCGG 1 cut(s) 184
HgaI GACGC 2 cut(s) 388, 610
HhaI GCGC 1 cut(s) 423
Hin1II CATG 7 cut(s) 307, 357, 397, 598, 664, 697, 908
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HinfI GANTC 2 cut(s) 56, 847
HpaII CCGG 1 cut(s) 184
HphI GGTGA 4 cut(s) 244, 370, 424, 929
Hpy166II GTNNAC 5 cut(s) 73, 343, 361, 444, 592
Hpy188I TCNGA 5 cut(s) 160, 386, 686, 934, 975
Hpy188III TCNNGA 5 cut(s) 184, 394, 415, 667, 721
Hpy8I GTNNAC 5 cut(s) 73, 343, 361, 444, 592
Hpy99I CGWCG 2 cut(s) 404, 626
HpyAV CCTTC 4 cut(s) 280, 391, 445, 457
HpyCH4III ACNGT 2 cut(s) 484, 874
HpyCH4IV ACGT 3 cut(s) 471, 537, 741
HpyCH4V TGCA 3 cut(s) 25, 444, 891
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 531, 807
HpyF3I CTNAG 1 cut(s) 683
HpySE526I ACGT 3 cut(s) 471, 537, 741
Hsp92II CATG 7 cut(s) 307, 357, 397, 598, 664, 697, 908
HspAI GCGC 1 cut(s) 421
Kpn2I TCCGGA 1 cut(s) 183
Ksp22I TGATCA 2 cut(s) 429, 663
Kzo9I GATC 9 cut(s) 114, 177, 390, 429, 567, 651, 663, 723, 934
LguI GCTCTTC 1 cut(s) 284
LmnI GCTCC 1 cut(s) 186
Lsp1109I GCAGC 2 cut(s) 274, 822
LweI GCATC 1 cut(s) 54
MaeI CTAG 1 cut(s) 618
MaeII ACGT 3 cut(s) 471, 537, 741
MaeIII GTNAC 1 cut(s) 265
MalI GATC 9 cut(s) 116, 179, 392, 431, 569, 653, 665, 725, 936
MboI GATC 9 cut(s) 114, 177, 390, 429, 567, 651, 663, 723, 934
MboII GAAGA 9 cut(s) 82, 127, 160, 271, 304, 451, 532, 650, 706
MflI RGATCY 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 446
MluCI AATT 2 cut(s) 492, 912
MmeI TCCRAC 2 cut(s) 183, 615
MroI TCCGGA 1 cut(s) 183
MseI TTAA 2 cut(s) 840, 1006
MslI CAYNNNNRTG 2 cut(s) 302, 698
MspCI CTTAAG 1 cut(s) 839
MspI CCGG 1 cut(s) 184
MspR9I CCNGG 3 cut(s) 175, 370, 452
MvaI CCWGG 3 cut(s) 175, 370, 452
MvnI CGCG 2 cut(s) 423, 525
MwoI GCNNNNNNNGC 3 cut(s) 102, 531, 807
NdeII GATC 9 cut(s) 114, 177, 390, 429, 567, 651, 663, 723, 934
NheI GCTAGC 1 cut(s) 617
NlaIII CATG 7 cut(s) 307, 357, 397, 598, 664, 697, 908
NlaIV GGNNCC 1 cut(s) 179
NspI RCATGY 2 cut(s) 357, 697
PaeI GCATGC 1 cut(s) 357
PaeR7I CTCGAG 1 cut(s) 941
PagI TCATGA 1 cut(s) 393
PciI ACATGT 1 cut(s) 693
PciSI GCTCTTC 1 cut(s) 284
PfeI GAWTC 2 cut(s) 56, 847
PflMI CCANNNNNTGG 2 cut(s) 261, 606
PfoI TCCNGGA 1 cut(s) 173
PkrI GCNGC 2 cut(s) 289, 837
PscI ACATGT 1 cut(s) 693
Psp6I CCWGG 3 cut(s) 173, 368, 450
PspEI GGTNACC 1 cut(s) 265
PspGI CCWGG 3 cut(s) 173, 368, 450
PspN4I GGNNCC 1 cut(s) 179
PspXI VCTCGAGB 1 cut(s) 941
PsuI RGATCY 1 cut(s) 177
RsaI GTAC 2 cut(s) 593, 899
RsaNI GTAC 2 cut(s) 592, 898
RseI CAYNNNNRTG 2 cut(s) 302, 698
SapI GCTCTTC 1 cut(s) 284
SaqAI TTAA 2 cut(s) 840, 1006
SatI GCNGC 2 cut(s) 288, 836
Sau3AI GATC 9 cut(s) 114, 177, 390, 429, 567, 651, 663, 723, 934
ScrFI CCNGG 3 cut(s) 175, 370, 452
SduI GDGCHC 1 cut(s) 446
SfaNI GCATC 1 cut(s) 54
Sfr274I CTCGAG 1 cut(s) 941
SlaI CTCGAG 1 cut(s) 941
SmiMI CAYNNNNRTG 2 cut(s) 302, 698
SmlI CTYRAG 3 cut(s) 839, 941, 995
SmoI CTYRAG 3 cut(s) 839, 941, 995
SphI GCATGC 1 cut(s) 357
Sse9I AATT 2 cut(s) 492, 912
SsiI CCGC 3 cut(s) 333, 366, 525
SspMI CTAG 1 cut(s) 618
StyD4I CCNGG 3 cut(s) 173, 368, 450
StyI CCWWGG 4 cut(s) 31, 198, 407, 981
TaaI ACNGT 2 cut(s) 484, 874
TaiI ACGT 3 cut(s) 474, 540, 744
TaqI TCGA 1 cut(s) 942
TasI AATT 2 cut(s) 492, 912
TatI WGTACW 1 cut(s) 591
TfiI GAWTC 2 cut(s) 56, 847
Tru1I TTAA 2 cut(s) 840, 1006
Tru9I TTAA 2 cut(s) 840, 1006
TseI GCWGC 2 cut(s) 287, 835
TspDTI ATGAA 4 cut(s) 121, 706, 744, 921
Van91I CCANNNNNTGG 2 cut(s) 261, 606
Vha464I CTTAAG 1 cut(s) 839
VneI GTGCAC 1 cut(s) 442
XceI RCATGY 2 cut(s) 357, 697
XcmI CCANNNNNNNNNTGG 1 cut(s) 334
XhoI CTCGAG 1 cut(s) 941
XmiI GTMKAC 3 cut(s) 72, 342, 360
XspI CTAG 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.