Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008118

Physical Location & Seq

Genomic Coordinates Reverse (-)

1442032 .. 1443051

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1010500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGATAGAGAACAAGATGAATTGCAATTTCTTGGGATTTTTGGCATCTACAAAGAAGCCTACAAAATAGTATTTTCACGGAGAAAAATCTTCAGCCAAATTACATTAGCCTTGATCCTCCCTTTGAGCTTCTTATTCTTGTCGCACATAGAACTCTCAAACATCCTTCTCTCAAAGATCATCCACAACGAAATAGTCCTTGATGGAACAAGCGCGAACAATCCAAAGTATGAAAAAGTATCCGATGCCATATCCTCCGAGTGGGCAACTTATTGGCTATTCAAAGCTGCATACTTCACCTTCCTGCTCATCTTCAGCCTCCTCTCCACCTCTGCCGTTGTATACACGATCGCGTGTATATACACGAAGCGAGAAATCACTTTCAAGAAGGTGATGAGCGTAGTCCCGAAAGTGTGGAAGCGAGTTATGGTCACGTTCTTGTGCATTTTCATGGCTATCTTTTGCTACAACATAGTGGCTTTCCTAATCCTAATTATTTGGGTACTTATCTGGGTACTTGCCGCACTTTCGATGGCCAAAAGCGATGCCATTGAAAAAATAATTGGGGTTTTTCTACTCATTGTATACTTCATAGGGTTTGTTTACCTAACCCTAATCTGGCAACTGGCTGCCGTGGTCTCAGTTCTTGAAGAAGCTAGAGGGATCAAAGCCATGGTGAAGAGCAAGGCACTACTAAAAGGAAATATGTGGGTTGCTGCAATCATATACTGTAAGCTCAATGTTTTGGCCGCCCTTCTACAATTTGGGTTCCAACAATTAGTTGTGAGCGGAAGGTCATTTGTTGTGGCTGAACGAGTAGCATATGGAGTTATATGCTTCTTGTTGCTTTTCAAGCTGGTTTTGTTTGGTCTTGTGATCCAAACTGTGCTCTATTTCGTTTGCAAGTCGTACCACCACGAAAAAATCGACAAATCGGCGTTATCAGATCACCTTGAGGTTTATCTGCCGGGGGATTATGTGCCTCTCAGCTCTAAGAATGTTCAGCTTGAGCAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

340

Amino Acids

38.65

Weight (kDa)

9.11

Isoelectric Point (pI)

28.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15070
malus_domestica	MD05G1011000.v1.1 MD10G1010500.v1.1 MD10G1010700.v1.1
prunus_persica	Prupe.8G014200_v2.0.a1
pyrus_communis	pycom05g00620 pycom10g00680
rosa_chinensis	RchiOBHm_Chr6g0277711 RchiOBHm_Chr6g0277721
rosa_laevigata	RLG00000013280 RLG00000013281
rosa_multiflora	Rmu_sc0007109.1_g000007 Rmu_sc0007109.1_g000008 Rmu_sc0007109.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191010 Rroxscaffold_7G00191030
rosa_rugosa	Rorug06G0110500 Rorug06G0110500
rosa_samantha	Rh6BG225000 Rh6CG227400 Rh6DG218100 Rh6DG218200
rosa_wichuraiana	Rw6G019360 Rw6G019370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	789
AccI	GTMKAC	2 cut(s)	342, 585
AccII	CGCG	2 cut(s)	215, 353
AciI	CCGC	3 cut(s)	522, 750, 789
AclWI	GGATC	3 cut(s)	109, 671, 871
AcoI	YGGCCR	2 cut(s)	534, 747
AcuI	CTGAAG	2 cut(s)	76, 298
AfaI	GTAC	3 cut(s)	504, 516, 911
AfiI	CCNNNNNNNGG	2 cut(s)	261, 618
AgsI	TTSAA	5 cut(s)	283, 385, 554, 650, 853
AjuI	GAANNNNNNNTTGG	2 cut(s)	546, 578
AluBI	AGCT	7 cut(s)	129, 287, 656, 736, 856, 990, 1006
AluI	AGCT	7 cut(s)	129, 287, 656, 736, 856, 990, 1006
Alw21I	GWGCWC	1 cut(s)	891
Alw26I	GTCTC	1 cut(s)	643
AlwI	GGATC	3 cut(s)	109, 671, 871
AoxI	GGCC	2 cut(s)	534, 747
ApeKI	GCWGC	3 cut(s)	287, 629, 716
AspLEI	GCGC	1 cut(s)	215
AsuC2I	CCSGG	1 cut(s)	969
AsuHPI	GGTGA	4 cut(s)	289, 403, 688, 941
BalI	TGGCCA	1 cut(s)	536
Bbv12I	GWGCWC	1 cut(s)	891
BbvI	GCAGC	3 cut(s)	274, 616, 703
BccI	CCATC	2 cut(s)	197, 526
BceAI	ACGGC	2 cut(s)	320, 617
BciVI	GTATCC	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	969
BcoDI	GTCTC	1 cut(s)	643
BfaI	CTAG	1 cut(s)	657
BfuI	GTATCC	1 cut(s)	250
BisI	GCNGC	5 cut(s)	288, 522, 630, 717, 750
BlsI	GCNGC	5 cut(s)	289, 523, 631, 718, 751
Bme1390I	CCNGG	1 cut(s)	969
BmiI	GGNNCC	1 cut(s)	770
BmrFI	CCNGG	1 cut(s)	969
BmsI	GCATC	3 cut(s)	54, 235, 535
BpuEI	CTTGAG	1 cut(s)	974
BpuMI	CCSGG	1 cut(s)	969
BsaI	GGTCTC	1 cut(s)	643
BsaJI	CCNNGG	3 cut(s)	633, 672, 968
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 618
Bse1I	ACTGG	1 cut(s)	630
BseDI	CCNNGG	3 cut(s)	633, 672, 968
BseGI	GGATG	2 cut(s)	162, 180
BseLI	CCNNNNNNNGG	2 cut(s)	261, 618
BseMII	CTCAG	2 cut(s)	654, 1000
BseNI	ACTGG	1 cut(s)	630
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	3 cut(s)	274, 616, 703
Bsh1236I	CGCG	2 cut(s)	215, 353
Bsh1285I	CGRYCG	1 cut(s)	351
BshFI	GGCC	2 cut(s)	536, 749
BsiEI	CGRYCG	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	891
BsiSI	CCGG	1 cut(s)	968
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	261, 618
BsmAI	GTCTC	1 cut(s)	643
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	2 cut(s)	536, 749
Bso31I	GGTCTC	1 cut(s)	643
Bsp1286I	GDGCHC	1 cut(s)	891
Bsp143I	GATC	6 cut(s)	114, 177, 348, 663, 876, 946
Bsp19I	CCATGG	1 cut(s)	672
BspACI	CCGC	3 cut(s)	522, 750, 789
BspANI	GGCC	2 cut(s)	536, 749
BspCNI	CTCAG	2 cut(s)	653, 999
BspFNI	CGCG	2 cut(s)	215, 353
BspLI	GGNNCC	1 cut(s)	770
BspPI	GGATC	3 cut(s)	109, 671, 871
BspQI	GCTCTTC	1 cut(s)	674
BspTNI	GGTCTC	1 cut(s)	643
BsrBI	CCGCTC	1 cut(s)	789
BsrI	ACTGG	1 cut(s)	630
BssECI	CCNNGG	3 cut(s)	633, 672, 968
BssMI	GATC	6 cut(s)	114, 177, 348, 663, 876, 946
BssNAI	GTATAC	2 cut(s)	343, 586
BssT1I	CCWWGG	1 cut(s)	672
Bst1107I	GTATAC	2 cut(s)	343, 586
Bst4CI	ACNGT	2 cut(s)	731, 886
Bst6I	CTCTTC	1 cut(s)	674
BstDEI	CTNAG	3 cut(s)	640, 986, 993
BstDSI	CCRYGG	2 cut(s)	633, 672
BstF5I	GGATG	2 cut(s)	162, 180
BstFNI	CGCG	2 cut(s)	215, 353
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	6 cut(s)	117, 180, 351, 666, 879, 949
BstMAI	GTCTC	1 cut(s)	643
BstMBI	GATC	6 cut(s)	114, 177, 348, 663, 876, 946
BstMCI	CGRYCG	1 cut(s)	351
BstMWI	GCNNNNNNNGC	1 cut(s)	853
BstSCI	CCNGG	1 cut(s)	967
BstUI	CGCG	2 cut(s)	215, 353
BstV1I	GCAGC	3 cut(s)	274, 616, 703
BstZ17I	GTATAC	2 cut(s)	343, 586
BsuI	GTATCC	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	536, 749
BtgI	CCRYGG	2 cut(s)	633, 672
BtgZI	GCGATG	1 cut(s)	558
BtsCI	GGATG	2 cut(s)	162, 180
CfoI	GCGC	1 cut(s)	215
Csp6I	GTAC	3 cut(s)	503, 515, 910
CviAII	CATG	2 cut(s)	451, 673
CviQI	GTAC	3 cut(s)	503, 515, 910
DdeI	CTNAG	3 cut(s)	640, 986, 993
DpnI	GATC	6 cut(s)	116, 179, 350, 665, 878, 948
DpnII	GATC	6 cut(s)	114, 177, 348, 663, 876, 946
EaeI	YGGCCR	2 cut(s)	534, 747
Eam1104I	CTCTTC	1 cut(s)	674
EarI	CTCTTC	1 cut(s)	674
Eco130I	CCWWGG	1 cut(s)	672
Eco31I	GGTCTC	1 cut(s)	643
Eco57I	CTGAAG	2 cut(s)	76, 298
EcoT14I	CCWWGG	1 cut(s)	672
ErhI	CCWWGG	1 cut(s)	672
FaeI	CATG	2 cut(s)	454, 676
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	2 cut(s)	450, 672
FauNDI	CATATG	1 cut(s)	823
FblI	GTMKAC	2 cut(s)	342, 585
Fnu4HI	GCNGC	5 cut(s)	288, 522, 630, 717, 750
FokI	GGATG	2 cut(s)	149, 167
Fsp4HI	GCNGC	5 cut(s)	288, 522, 630, 717, 750
FspBI	CTAG	1 cut(s)	657
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	5 cut(s)	288, 522, 630, 717, 750
HaeIII	GGCC	2 cut(s)	536, 749
HapII	CCGG	1 cut(s)	968
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	454, 676
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HpaII	CCGG	1 cut(s)	968
HphI	GGTGA	4 cut(s)	289, 403, 688, 941
Hpy166II	GTNNAC	3 cut(s)	343, 586, 604
Hpy188I	TCNGA	3 cut(s)	244, 259, 946
Hpy188III	TCNNGA	3 cut(s)	385, 406, 647
Hpy8I	GTNNAC	3 cut(s)	343, 586, 604
HpyAV	CCTTC	5 cut(s)	176, 310, 382, 764, 786
HpyCH4III	ACNGT	2 cut(s)	731, 886
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	5 cut(s)	25, 290, 444, 719, 903
HpyF10VI	GCNNNNNNNGC	1 cut(s)	853
HpyF3I	CTNAG	3 cut(s)	640, 986, 993
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	2 cut(s)	454, 676
HspAI	GCGC	1 cut(s)	213
Kzo9I	GATC	6 cut(s)	114, 177, 348, 663, 876, 946
LguI	GCTCTTC	1 cut(s)	674
LpnPI	CCDG	6 cut(s)	317, 496, 604, 611, 842, 981
Lsp1109I	GCAGC	3 cut(s)	274, 616, 703
LweI	GCATC	3 cut(s)	54, 235, 535
MaeI	CTAG	1 cut(s)	657
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	6 cut(s)	116, 179, 350, 665, 878, 948
MbiI	CCGCTC	1 cut(s)	789
MboI	GATC	6 cut(s)	114, 177, 348, 663, 876, 946
MboII	GAAGA	4 cut(s)	82, 304, 662, 691
MhlI	GDGCHC	1 cut(s)	891
MlsI	TGGCCA	1 cut(s)	536
MluCI	AATT	7 cut(s)	20, 26, 99, 492, 561, 761, 776
MluNI	TGGCCA	1 cut(s)	536
MmeI	TCCRAC	1 cut(s)	796
MnlI	CCTC	8 cut(s)	128, 265, 329, 332, 340, 653, 949, 993
Mox20I	TGGCCA	1 cut(s)	536
MscI	TGGCCA	1 cut(s)	536
MseI	TTAA	1 cut(s)	1018
MslI	CAYNNNNRTG	1 cut(s)	449
Msp20I	TGGCCA	1 cut(s)	536
MspI	CCGG	1 cut(s)	968
MspR9I	CCNGG	1 cut(s)	969
MvnI	CGCG	2 cut(s)	215, 353
MwoI	GCNNNNNNNGC	1 cut(s)	853
NciI	CCSGG	1 cut(s)	969
NcoI	CCATGG	1 cut(s)	672
NdeI	CATATG	1 cut(s)	823
NdeII	GATC	6 cut(s)	114, 177, 348, 663, 876, 946
NlaIII	CATG	2 cut(s)	454, 676
NlaIV	GGNNCC	1 cut(s)	770
NmuCI	GTSAC	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	674
PcsI	WCGNNNNNNNCGW	1 cut(s)	924
PkrI	GCNGC	5 cut(s)	289, 523, 631, 718, 751
Ple19I	CGATCG	1 cut(s)	351
PspN4I	GGNNCC	1 cut(s)	770
PvuI	CGATCG	1 cut(s)	351
RsaI	GTAC	3 cut(s)	504, 516, 911
RsaNI	GTAC	3 cut(s)	503, 515, 910
RseI	CAYNNNNRTG	1 cut(s)	449
SapI	GCTCTTC	1 cut(s)	674
SaqAI	TTAA	1 cut(s)	1018
SatI	GCNGC	5 cut(s)	288, 522, 630, 717, 750
Sau3AI	GATC	6 cut(s)	114, 177, 348, 663, 876, 946
ScrFI	CCNGG	1 cut(s)	969
SduI	GDGCHC	1 cut(s)	891
SfaNI	GCATC	3 cut(s)	54, 235, 535
SmiMI	CAYNNNNRTG	1 cut(s)	449
SmlI	CTYRAG	2 cut(s)	953, 1007
SmoI	CTYRAG	2 cut(s)	953, 1007
Sse9I	AATT	7 cut(s)	20, 26, 99, 492, 561, 761, 776
SsiI	CCGC	3 cut(s)	522, 750, 789
SspMI	CTAG	1 cut(s)	657
StyD4I	CCNGG	1 cut(s)	967
StyI	CCWWGG	1 cut(s)	672
TaaI	ACNGT	2 cut(s)	731, 886
TaiI	ACGT	1 cut(s)	437
TaqI	TCGA	2 cut(s)	530, 927
TasI	AATT	7 cut(s)	20, 26, 99, 492, 561, 761, 776
TauI	GCSGC	2 cut(s)	524, 752
Tru1I	TTAA	1 cut(s)	1018
Tru9I	TTAA	1 cut(s)	1018
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	3 cut(s)	287, 629, 716
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	4 cut(s)	33, 246, 439, 580
TspGWI	ACGGA	1 cut(s)	94
XmiI	GTMKAC	2 cut(s)	342, 585
XspI	CTAG	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.