Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008118

Physical Location & Seq

Genomic Coordinates Reverse (-)

1450664 .. 1451662

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1010700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGATAGAGAACAAGATGAATTGCAATTTCTTGGGATTTTTGGCATCTACAAAGAAGCCTACAAAATAGTATTTTCACGGAGAAAAATCTTCAGCCAAATTACATTAGCCTTGATCCTCCCTTTGAGCATCGTATTCTTGGCGCACATAGCACTCTCAAACATCATTCTCTCAAAGATCATACACAACGAAATGGTCCTTGATGGAACAAGCACCAACAATCCAAGGTATGAAAAAATGTCAGATGTCATATCCTCCGAGTGGGCAACTTATTGGCTTTTCAATGCTGCATACTTCACCTTCCTGCTCATCTTCAGCCTCCTCTCCACCTCTGCCATTGTATACACAATCGCATGTATATACACGGCGCGAGAAATCACCTTCAAGAAGGTGATGAGCGTAGTCCCGAAAGTGTGGAAGCGAGTTATGGTCACGTTCTTGTGCACTTTCATGGCTTTTTTTTGTTACAACATAGTGGCTTTATTAGTCCTAATCATTTGGGTACTTTCGATGGGCATCAGTAGTGATGCCAGTGTTATAATTGGGTTTTTACTACTCATTGTTTACTTCATAGGGTTTGGTTACCTAACCCTAATCTGGCAACTGGCTAGCGTGGTCTCCGTTCTTGAAGAAGCAAGAGGGATCAAAGCCATGGCGAAGAGCAAGGAACTACTAAAAGGAAATATGTGGGTGGCTACAATCATATACTTTAGACTCAACGTTTTGGCCGCCCTTCTACAATTTGGGTTTCAACAACTAGTTGTGAGCGGAAGGTCATTTAGTGTGGCTGAAAGAGTAGCTTATGGAGTTATATGCTTGTTGCTGCTTCTCAAGCTGATTTTGTTTTGTCTTGTGATCCAAACTGTGCTCTATTTCGTTTGCAAGTCGCACCACCACGAAAACATCGACAAATCGGAGTTATCAGATCACCTTGAAGTTTATCTGATGGGGGGTTATATGCCTCTCAGCTCTAAGGATGTTCAATTTGAGCAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

333

Amino Acids

37.85

Weight (kDa)

8.62

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15070
malus_domestica	MD05G1011000.v1.1 MD10G1010500.v1.1 MD10G1010700.v1.1
prunus_persica	Prupe.8G014200_v2.0.a1
pyrus_communis	pycom05g00620 pycom10g00680
rosa_chinensis	RchiOBHm_Chr6g0277711 RchiOBHm_Chr6g0277721
rosa_laevigata	RLG00000013280 RLG00000013281
rosa_multiflora	Rmu_sc0007109.1_g000007 Rmu_sc0007109.1_g000008 Rmu_sc0007109.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191010 Rroxscaffold_7G00191030
rosa_rugosa	Rorug06G0110500 Rorug06G0110500
rosa_samantha	Rh6BG225000 Rh6CG227400 Rh6DG218100 Rh6DG218200
rosa_wichuraiana	Rw6G019360 Rw6G019370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	539
AccBSI	CCGCTC	1 cut(s)	768
AccI	GTMKAC	1 cut(s)	342
AccII	CGCG	1 cut(s)	370
AciI	CCGC	2 cut(s)	729, 768
AclI	AACGTT	1 cut(s)	720
AclWI	GGATC	3 cut(s)	109, 650, 850
AcoI	YGGCCR	1 cut(s)	726
AcuI	CTGAAG	2 cut(s)	76, 298
AfaI	GTAC	1 cut(s)	504
AfiI	CCNNNNNNNGG	2 cut(s)	261, 597
AgsI	TTSAA	6 cut(s)	283, 385, 629, 752, 935, 983
AhlI	ACTAGT	1 cut(s)	757
AluBI	AGCT	3 cut(s)	800, 835, 969
AluI	AGCT	3 cut(s)	800, 835, 969
Alw21I	GWGCWC	2 cut(s)	446, 870
Alw26I	GTCTC	1 cut(s)	622
Alw44I	GTGCAC	1 cut(s)	442
AlwI	GGATC	3 cut(s)	109, 650, 850
AoxI	GGCC	1 cut(s)	726
ApaLI	GTGCAC	1 cut(s)	442
ApeKI	GCWGC	2 cut(s)	287, 823
AspLEI	GCGC	2 cut(s)	145, 370
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	4 cut(s)	289, 370, 403, 920
AsuNHI	GCTAGC	1 cut(s)	608
AvaII	GGWCC	1 cut(s)	196
BaeGI	GKGCMC	1 cut(s)	446
Bbv12I	GWGCWC	2 cut(s)	446, 870
BbvI	GCAGC	2 cut(s)	274, 810
BccI	CCATC	3 cut(s)	197, 505, 940
BceAI	ACGGC	1 cut(s)	381
BcoDI	GTCTC	1 cut(s)	622
BcuI	ACTAGT	1 cut(s)	757
BfaI	CTAG	2 cut(s)	609, 758
BisI	GCNGC	3 cut(s)	288, 729, 824
BlsI	GCNGC	3 cut(s)	289, 730, 825
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	196
BmsI	GCATC	4 cut(s)	54, 138, 517, 525
BmtI	GCTAGC	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	815
BsaBI	GATNNNNATC	1 cut(s)	515
BsaI	GGTCTC	1 cut(s)	622
BsaJI	CCNNGG	2 cut(s)	224, 651
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 597
Bse1I	ACTGG	2 cut(s)	531, 609
Bse8I	GATNNNNATC	1 cut(s)	515
BseDI	CCNNGG	2 cut(s)	224, 651
BseGI	GGATG	1 cut(s)	982
BseJI	GATNNNNATC	1 cut(s)	515
BseLI	CCNNNNNNNGG	2 cut(s)	261, 597
BseMII	CTCAG	1 cut(s)	979
BseNI	ACTGG	2 cut(s)	531, 609
BseRI	GAGGAG	1 cut(s)	311
BseSI	GKGCMC	1 cut(s)	446
BseXI	GCAGC	2 cut(s)	274, 810
Bsh1236I	CGCG	1 cut(s)	370
BshFI	GGCC	1 cut(s)	728
BsiHKAI	GWGCWC	2 cut(s)	446, 870
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	261, 597
BsmAI	GTCTC	1 cut(s)	622
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	1 cut(s)	728
Bso31I	GGTCTC	1 cut(s)	622
Bsp1286I	GDGCHC	2 cut(s)	446, 870
Bsp143I	GATC	5 cut(s)	114, 177, 642, 855, 925
Bsp19I	CCATGG	1 cut(s)	651
BspACI	CCGC	2 cut(s)	729, 768
BspANI	GGCC	1 cut(s)	728
BspCNI	CTCAG	1 cut(s)	978
BspFNI	CGCG	1 cut(s)	370
BspOI	GCTAGC	1 cut(s)	612
BspPI	GGATC	3 cut(s)	109, 650, 850
BspQI	GCTCTTC	1 cut(s)	653
BspTNI	GGTCTC	1 cut(s)	622
BsrBI	CCGCTC	1 cut(s)	768
BsrI	ACTGG	2 cut(s)	531, 609
BssECI	CCNNGG	2 cut(s)	224, 651
BssMI	GATC	5 cut(s)	114, 177, 642, 855, 925
BssNAI	GTATAC	1 cut(s)	343
BssT1I	CCWWGG	2 cut(s)	224, 651
Bst1107I	GTATAC	1 cut(s)	343
Bst4CI	ACNGT	1 cut(s)	865
Bst6I	CTCTTC	1 cut(s)	653
BstC8I	GCNNGC	1 cut(s)	610
BstDEI	CTNAG	2 cut(s)	965, 972
BstDSI	CCRYGG	1 cut(s)	651
BstEII	GGTNACC	1 cut(s)	581
BstF5I	GGATG	1 cut(s)	982
BstFNI	CGCG	1 cut(s)	370
BstHHI	GCGC	2 cut(s)	145, 370
BstKTI	GATC	5 cut(s)	117, 180, 645, 858, 928
BstMAI	GTCTC	1 cut(s)	622
BstMBI	GATC	5 cut(s)	114, 177, 642, 855, 925
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 832
BstNSI	RCATGY	1 cut(s)	357
BstPI	GGTNACC	1 cut(s)	581
BstSLI	GKGCMC	1 cut(s)	446
BstUI	CGCG	1 cut(s)	370
BstV1I	GCAGC	2 cut(s)	274, 810
BstZ17I	GTATAC	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	728
BtgI	CCRYGG	1 cut(s)	651
BtsCI	GGATG	1 cut(s)	982
BtsIMutI	CAGTG	1 cut(s)	538
Cac8I	GCNNGC	1 cut(s)	610
CfoI	GCGC	2 cut(s)	145, 370
Cfr13I	GGNCC	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	503
CviAII	CATG	3 cut(s)	354, 451, 652
CviQI	GTAC	1 cut(s)	503
DdeI	CTNAG	2 cut(s)	965, 972
DpnI	GATC	5 cut(s)	116, 179, 644, 857, 927
DpnII	GATC	5 cut(s)	114, 177, 642, 855, 925
EaeI	YGGCCR	1 cut(s)	726
Eam1104I	CTCTTC	1 cut(s)	653
EarI	CTCTTC	1 cut(s)	653
Eco130I	CCWWGG	2 cut(s)	224, 651
Eco31I	GGTCTC	1 cut(s)	622
Eco47I	GGWCC	1 cut(s)	196
Eco57I	CTGAAG	2 cut(s)	76, 298
Eco91I	GGTNACC	1 cut(s)	581
EcoO65I	GGTNACC	1 cut(s)	581
EcoT14I	CCWWGG	2 cut(s)	224, 651
ErhI	CCWWGG	2 cut(s)	224, 651
FaeI	CATG	3 cut(s)	357, 454, 655
FalI	AAGNNNNNCTT	2 cut(s)	784, 816
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	3 cut(s)	353, 450, 651
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	3 cut(s)	288, 729, 824
FokI	GGATG	1 cut(s)	989
Fsp4HI	GCNGC	3 cut(s)	288, 729, 824
FspBI	CTAG	2 cut(s)	609, 758
GlaI	GCGC	2 cut(s)	144, 369
GluI	GCNGC	3 cut(s)	288, 729, 824
HaeIII	GGCC	1 cut(s)	728
HhaI	GCGC	2 cut(s)	145, 370
Hin1II	CATG	3 cut(s)	357, 454, 655
Hin6I	GCGC	2 cut(s)	143, 368
HinP1I	GCGC	2 cut(s)	143, 368
HinfI	GANTC	1 cut(s)	714
HphI	GGTGA	4 cut(s)	289, 370, 403, 920
Hpy166II	GTNNAC	3 cut(s)	343, 444, 565
Hpy188I	TCNGA	5 cut(s)	244, 259, 916, 925, 945
Hpy188III	TCNNGA	3 cut(s)	385, 406, 626
Hpy8I	GTNNAC	3 cut(s)	343, 444, 565
HpyAV	CCTTC	5 cut(s)	310, 382, 391, 743, 765
HpyCH4III	ACNGT	1 cut(s)	865
HpyCH4IV	ACGT	2 cut(s)	434, 720
HpyCH4V	TGCA	4 cut(s)	25, 290, 444, 882
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 832
HpyF3I	CTNAG	2 cut(s)	965, 972
HpySE526I	ACGT	2 cut(s)	434, 720
Hsp92II	CATG	3 cut(s)	357, 454, 655
HspAI	GCGC	2 cut(s)	143, 368
Kzo9I	GATC	5 cut(s)	114, 177, 642, 855, 925
LguI	GCTCTTC	1 cut(s)	653
LpnPI	CCDG	4 cut(s)	317, 544, 583, 590
Lsp1109I	GCAGC	2 cut(s)	274, 810
LweI	GCATC	4 cut(s)	54, 138, 517, 525
MaeI	CTAG	2 cut(s)	609, 758
MaeII	ACGT	2 cut(s)	434, 720
MaeIII	GTNAC	3 cut(s)	430, 464, 581
MalI	GATC	5 cut(s)	116, 179, 644, 857, 927
MbiI	CCGCTC	1 cut(s)	768
MboI	GATC	5 cut(s)	114, 177, 642, 855, 925
MboII	GAAGA	4 cut(s)	82, 304, 641, 670
MhlI	GDGCHC	2 cut(s)	446, 870
MluCI	AATT	6 cut(s)	20, 26, 99, 540, 740, 983
MlyI	GAGTC	1 cut(s)	708
MnlI	CCTC	7 cut(s)	128, 265, 329, 332, 340, 632, 972
MseI	TTAA	1 cut(s)	997
MslI	CAYNNNNRTG	1 cut(s)	449
MvnI	CGCG	1 cut(s)	370
MwoI	GCNNNNNNNGC	2 cut(s)	149, 832
NcoI	CCATGG	1 cut(s)	651
NdeII	GATC	5 cut(s)	114, 177, 642, 855, 925
NheI	GCTAGC	1 cut(s)	608
NlaIII	CATG	3 cut(s)	357, 454, 655
NmuCI	GTSAC	1 cut(s)	430
NspI	RCATGY	1 cut(s)	357
PciSI	GCTCTTC	1 cut(s)	653
PcsI	WCGNNNNNNNCGW	1 cut(s)	903
PkrI	GCNGC	3 cut(s)	289, 730, 825
PleI	GAGTC	1 cut(s)	708
PpsI	GAGTC	1 cut(s)	708
PsiI	TTATAA	1 cut(s)	539
Psp1406I	AACGTT	1 cut(s)	720
PspEI	GGTNACC	1 cut(s)	581
PspPI	GGNCC	1 cut(s)	196
RsaI	GTAC	1 cut(s)	504
RsaNI	GTAC	1 cut(s)	503
RseI	CAYNNNNRTG	1 cut(s)	449
SapI	GCTCTTC	1 cut(s)	653
SaqAI	TTAA	1 cut(s)	997
SatI	GCNGC	3 cut(s)	288, 729, 824
Sau3AI	GATC	5 cut(s)	114, 177, 642, 855, 925
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	708
SduI	GDGCHC	2 cut(s)	446, 870
SfaNI	GCATC	4 cut(s)	54, 138, 517, 525
SinI	GGWCC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	449
SmlI	CTYRAG	1 cut(s)	830
SmoI	CTYRAG	1 cut(s)	830
SpeI	ACTAGT	1 cut(s)	757
Sse9I	AATT	6 cut(s)	20, 26, 99, 540, 740, 983
SsiI	CCGC	2 cut(s)	729, 768
SspMI	CTAG	2 cut(s)	609, 758
StyI	CCWWGG	2 cut(s)	224, 651
TaaI	ACNGT	1 cut(s)	865
TaiI	ACGT	2 cut(s)	437, 723
TaqI	TCGA	2 cut(s)	509, 906
TasI	AATT	6 cut(s)	20, 26, 99, 540, 740, 983
TauI	GCSGC	1 cut(s)	731
Tru1I	TTAA	1 cut(s)	997
Tru9I	TTAA	1 cut(s)	997
TscAI	CASTG	1 cut(s)	538
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	2 cut(s)	287, 823
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	4 cut(s)	33, 246, 439, 559
TspGWI	ACGGA	2 cut(s)	94, 610
TspRI	CASTG	1 cut(s)	538
VneI	GTGCAC	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	196
XceI	RCATGY	1 cut(s)	357
XmiI	GTMKAC	1 cut(s)	342
XspI	CTAG	2 cut(s)	609, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.