FvH4_2g16320

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
14232835 .. 14237532
4698 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16320.t1

Sequence Viewer

Length: 1524 bp
ATGGGTTGCTGTGATTCCAAGTTTCTTACATCCGAGAGTACTCACCCCGAGAAAGTCCCCACCCACCACCAACAACCCCACAGCGGCTCTCGGGCCCCGACCCACCACCCTTCTCTCCCCGCCGGATCCGACCCGGAATCCGGCGCCGCCCCGCCCTTCTCGGAATTCTCCTTCTCCGACCTCAAAACCGCCACCAACAACTTCAGCTCCGACTACATAGTATCTGAAAGTGGCGAGAAAGCCCCCAACGTTGTCTACAAGGGTAGGCTCAATAACCGCCGTTGGATCGCCGTCAAGAAGTTCACCAAGCTTGCGTGGCCCGATCCCAAGCAGTTTGCTGAGGAAGCTTGGGGTGTGGGGAAGCTGAGGCATAGGAGGCTTGCAAATCTAATTGGGTACTGCTGTGATGGTGATGAGAGGCTGCTTGTTGCTGAGTACATGCCTACTGATACTTTAGCCAAGCATTTGTTTCACTGGGAGAATCAAACCATTGAGTGGGCCATGCGTTTAAGAGTTGCTTTTCATATAGCTGAAGCTTTAGATTATTGTAGTACTGAGGGCCGTCCGTTATACCATGATTTGAATGCTTATAGGGTTCTCTTTGATGAGGATGGTGATCCACGTCTTTCATGTTTTGGCTTGATGAGGAATAGTAGGGATGGAAAGAGCTATAGCACAAATCTGGCTTATACACCACCAGAGTATTTAAGAAATGGAAGGGTCACTCCAGAAAGTGTTATCTACAGCTTTGGCACTGTCCTTTTAGATTTGCTAAGTGGAAAGCATATCCCTCCAAGTCATGCTCTTGATATGATACGGGGGAAGAATATCATTCTCTTAATGGATTCGCATTTGGAGGGAAAGTTTTCTACTGAGGAAGCGACGGTGGTTGTCAATCTTGCCTCTCAATGTTTACAGTATGAGCCAAGAGAGCGGCCTAATAGAAAGGACCTTGTTTCTACACTTGCTCCACTGCAGACCAAACCTGATGTTCCATCTTATGTCATGCTTGGAATTCCAAAGCATGAGGAAGCCCCACCAACCCCGCAACGGCCCCTTTCAGCAATGGGTGAGGCCTGCTCTCGAATGGACCTCACAGCGATCCATCAGATCTTGGTTATGACCCACTACAGAGATGATGAAGGAACCAATGAGTTATCCTTTCAAGAGTGGACCCAACAGATGAGAGACATGCTGGAGGCGAGGAAGCGAGGAGACTATGCGTTTCGTGACAAAGATTTTAAAGCTGCCATTGACTGCTACTCCCAGTTCATAGATGTTGGAACTATGGTGTCCCCCACTGTTTTTGCACGACGTAGTTTATGCTATCTGTTAAATGAGCAACCAGATGCTGCCCTTCGAGATGCAATGCAAGCTCAATGTGTCTATCCGGACTGGCCGACGGCCTTCTACATGCAGTCAGTTGCTCTTGCTAAGTTGGACATGCACAAGGACGCTGGTGACATGTTAAATGAAGCAACTACACTAGAAGAAAAGAGGCAAAGAGGTGGCAGGGGATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

508

Amino Acids

57.33

Weight (kDa)

6.07

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 84 - 322 9e-26 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 84 - 319 5.7e-23 Protein kinase domain
TPR_BSK1_C PF25575 358 - 474 3.7e-61 Serine/threonine-protein kinase BSK1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 143
AccB7I CCANNNNNTGG 1 cut(s) 495
AccBSI CCGCTC 1 cut(s) 934
AccI GTMKAC 1 cut(s) 255
AccIII TCCGGA 1 cut(s) 1390
AciI CCGC 8 cut(s) 84, 120, 147, 152, 189, 277, 934, 1046
AclI AACGTT 1 cut(s) 249
AclWI GGATC 6 cut(s) 120, 133, 293, 317, 611, 1096
AcoI YGGCCR 1 cut(s) 1397
AcsI RAATTY 2 cut(s) 164, 1014
AcuI CTGAAG 2 cut(s) 187, 552
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 4 cut(s) 40, 398, 437, 553
AfiI CCNNNNNNNGG 4 cut(s) 83, 140, 495, 1050
AflIII ACRYGT 1 cut(s) 1464
AgsI TTSAA 2 cut(s) 583, 1166
AjiI CACGTC 1 cut(s) 623
Alw26I GTCTC 2 cut(s) 1182, 1209
AlwI GGATC 6 cut(s) 120, 133, 293, 317, 611, 1096
AlwNI CAGNNNCTG 1 cut(s) 1352
Ama87I CYCGRG 2 cut(s) 47, 90
Aor13HI TCCGGA 1 cut(s) 1390
AoxI GGCC 9 cut(s) 93, 317, 498, 559, 935, 1052, 1074, 1397, 1404
ApaI GGGCCC 1 cut(s) 97
ApeKI GCWGC 3 cut(s) 421, 1247, 1352
ApoI RAATTY 2 cut(s) 164, 1014
Asp700I GAANNNNTTC 1 cut(s) 865
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 9 cut(s) 93, 94, 318, 498, 559, 949, 1053, 1090, 1173
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 6 cut(s) 35, 295, 422, 626, 1082, 1472
AvaI CYCGRG 2 cut(s) 47, 90
AvaII GGWCC 3 cut(s) 949, 1090, 1173
BaeGI GKGCMC 1 cut(s) 97
BaeI ACNNNNGTAYC 2 cut(s) 388, 421
BamHI GGATCC 1 cut(s) 125
BanI GGYRCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 97
BbvCI CCTCAGC 2 cut(s) 339, 365
BbvI GCAGC 3 cut(s) 408, 1234, 1339
BccI CCATC 5 cut(s) 401, 605, 653, 1003, 1113
BceAI ACGGC 5 cut(s) 264, 275, 546, 1067, 1419
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 2 cut(s) 1182, 1209
BfaI CTAG 1 cut(s) 1487
BfmI CTRYAG 4 cut(s) 670, 742, 974, 1129
BfoI RGCGCY 1 cut(s) 147
BglII AGATCT 1 cut(s) 1110
BisI GCNGC 6 cut(s) 85, 147, 422, 935, 1248, 1353
BlsI GCNGC 6 cut(s) 86, 148, 423, 936, 1249, 1354
BmcAI AGTACT 2 cut(s) 40, 553
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 3 cut(s) 949, 1090, 1173
BmeT110I CYCGRG 2 cut(s) 47, 90
BmgBI CACGTC 1 cut(s) 623
BmgT120I GGNCC 9 cut(s) 93, 94, 318, 498, 559, 949, 1053, 1090, 1173
BmiI GGNNCC 7 cut(s) 95, 96, 127, 145, 1055, 1147, 1175
BmrFI CCNGG 1 cut(s) 134
BmrI ACTGGG 2 cut(s) 484, 1261
BmsI GCATC 2 cut(s) 1339, 1354
BmuI ACTGGG 2 cut(s) 484, 1261
BplI GAGNNNNNCTC 2 cut(s) 1064, 1096
BpmI CTGGAG 2 cut(s) 711, 1217
Bpu10I CCTNAGC 2 cut(s) 339, 365
BpuMI CCSGG 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 615
BsaHI GRCGYC 1 cut(s) 144
BsaWI WCCGGW 1 cut(s) 1390
BsaXI ACNNNNNCTCC 8 cut(s) 191, 221, 848, 878, 952, 982, 1247, 1277
Bsc4I CCNNNNNNNGG 4 cut(s) 83, 140, 495, 1050
Bse1I ACTGG 3 cut(s) 479, 1267, 1400
Bse3DI GCAATG 2 cut(s) 1071, 1374
Bse8I GATNNNNATC 1 cut(s) 615
BseAI TCCGGA 1 cut(s) 1390
BseGI GGATG 3 cut(s) 29, 616, 664
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 4 cut(s) 83, 140, 495, 1050
BseMI GCAATG 2 cut(s) 1071, 1374
BseMII CTCAG 5 cut(s) 330, 356, 423, 546, 864
BseNI ACTGG 3 cut(s) 479, 1267, 1400
BseRI GAGGAG 1 cut(s) 1227
BseSI GKGCMC 1 cut(s) 97
BseXI GCAGC 3 cut(s) 408, 1234, 1339
BshFI GGCC 9 cut(s) 95, 319, 500, 561, 937, 1054, 1076, 1399, 1406
BshNI GGYRCC 1 cut(s) 143
BsiHKCI CYCGRG 2 cut(s) 47, 90
BsiSI CCGG 4 cut(s) 123, 134, 141, 1391
BslFI GGGAC 2 cut(s) 41, 1279
BslI CCNNNNNNNGG 4 cut(s) 83, 140, 495, 1050
BsmAI GTCTC 2 cut(s) 1182, 1209
BsmFI GGGAC 2 cut(s) 41, 1279
BsmI GAATGC 1 cut(s) 589
BsnI GGCC 9 cut(s) 95, 319, 500, 561, 937, 1054, 1076, 1399, 1406
BsoBI CYCGRG 2 cut(s) 47, 90
Bsp120I GGGCCC 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 97
Bsp13I TCCGGA 1 cut(s) 1390
Bsp143I GATC 7 cut(s) 125, 285, 322, 616, 1101, 1110, 1517
BspACI CCGC 8 cut(s) 84, 120, 147, 152, 189, 277, 934, 1046
BspANI GGCC 9 cut(s) 95, 319, 500, 561, 937, 1054, 1076, 1399, 1406
BspCNI CTCAG 5 cut(s) 331, 357, 424, 547, 865
BspEI TCCGGA 1 cut(s) 1390
BspLI GGNNCC 7 cut(s) 95, 96, 127, 145, 1055, 1147, 1175
BspMAI CTGCAG 1 cut(s) 978
BspPI GGATC 6 cut(s) 120, 133, 293, 317, 611, 1096
BspT107I GGYRCC 1 cut(s) 143
BsrBI CCGCTC 1 cut(s) 934
BsrDI GCAATG 2 cut(s) 1071, 1374
BsrI ACTGG 3 cut(s) 479, 1267, 1400
BssMI GATC 7 cut(s) 125, 285, 322, 616, 1101, 1110, 1517
BssNI GRCGYC 1 cut(s) 144
Bst4CI ACNGT 4 cut(s) 757, 886, 918, 1303
BstACI GRCGYC 1 cut(s) 144
BstC8I GCNNGC 4 cut(s) 312, 381, 1078, 1374
BstDEI CTNAG 7 cut(s) 339, 365, 432, 555, 773, 873, 1434
BstF5I GGATG 3 cut(s) 29, 616, 664
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 7 cut(s) 128, 288, 325, 619, 1104, 1113, 1520
BstMAI GTCTC 2 cut(s) 1182, 1209
BstMBI GATC 7 cut(s) 125, 285, 322, 616, 1101, 1110, 1517
BstMWI GCNNNNNNNGC 5 cut(s) 316, 344, 376, 931, 1373
BstNSI RCATGY 5 cut(s) 442, 1195, 1417, 1447, 1468
BstSCI CCNGG 1 cut(s) 132
BstSFI CTRYAG 4 cut(s) 670, 742, 974, 1129
BstSLI GKGCMC 1 cut(s) 97
BstV1I GCAGC 3 cut(s) 408, 1234, 1339
BstX2I RGATCY 2 cut(s) 125, 1110
BstYI RGATCY 2 cut(s) 125, 1110
BsuRI GGCC 9 cut(s) 95, 319, 500, 561, 937, 1054, 1076, 1399, 1406
BtrI CACGTC 1 cut(s) 623
BtsCI GGATG 3 cut(s) 29, 616, 664
BtsI GCAGTG 1 cut(s) 971
BtsIMutI CAGTG 4 cut(s) 472, 753, 971, 1299
Cac8I GCNNGC 4 cut(s) 312, 381, 1078, 1374
CaiI CAGNNNCTG 1 cut(s) 1352
CfoI GCGC 1 cut(s) 146
Cfr13I GGNCC 9 cut(s) 93, 94, 318, 498, 559, 949, 1053, 1090, 1173
CseI GACGC 1 cut(s) 1463
Csp6I GTAC 4 cut(s) 39, 397, 436, 552
CspCI CAANNNNNGTGG 2 cut(s) 1288, 1323
CviQI GTAC 4 cut(s) 39, 397, 436, 552
DdeI CTNAG 7 cut(s) 339, 365, 432, 555, 773, 873, 1434
DinI GGCGCC 1 cut(s) 145
DpnI GATC 7 cut(s) 127, 287, 324, 618, 1103, 1112, 1519
DpnII GATC 7 cut(s) 125, 285, 322, 616, 1101, 1110, 1517
DraI TTTAAA 1 cut(s) 1243
EaeI YGGCCR 1 cut(s) 1397
Eco147I AGGCCT 1 cut(s) 1076
Eco24I GRGCYC 1 cut(s) 97
Eco47I GGWCC 3 cut(s) 949, 1090, 1173
Eco57I CTGAAG 2 cut(s) 187, 552
Eco88I CYCGRG 2 cut(s) 47, 90
EcoO109I RGGNCCY 2 cut(s) 94, 949
EcoRI GAATTC 2 cut(s) 164, 1014
EcoT38I GRGCYC 1 cut(s) 97
EgeI GGCGCC 1 cut(s) 145
EheI GGCGCC 1 cut(s) 145
FalI AAGNNNNNCTT 2 cut(s) 502, 534
FaqI GGGAC 2 cut(s) 41, 1279
FauI CCCGC 3 cut(s) 127, 159, 1053
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 6 cut(s) 85, 147, 422, 935, 1248, 1353
FokI GGATG 3 cut(s) 16, 623, 671
FriOI GRGCYC 1 cut(s) 97
Fsp4HI GCNGC 6 cut(s) 85, 147, 422, 935, 1248, 1353
FspBI CTAG 1 cut(s) 1487
GlaI GCGC 1 cut(s) 145
GluI GCNGC 6 cut(s) 85, 147, 422, 935, 1248, 1353
GsuI CTGGAG 2 cut(s) 711, 1217
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 9 cut(s) 95, 319, 500, 561, 937, 1054, 1076, 1399, 1406
HapII CCGG 4 cut(s) 123, 134, 141, 1391
HgaI GACGC 1 cut(s) 1463
HhaI GCGC 1 cut(s) 146
Hin1I GRCGYC 1 cut(s) 144
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HindIII AAGCTT 3 cut(s) 308, 345, 534
HinfI GANTC 4 cut(s) 14, 137, 481, 845
HpaII CCGG 4 cut(s) 123, 134, 141, 1391
HphI GGTGA 6 cut(s) 35, 295, 422, 626, 1082, 1472
Hpy166II GTNNAC 4 cut(s) 256, 303, 914, 1173
Hpy188I TCNGA 7 cut(s) 34, 130, 163, 178, 211, 226, 1110
Hpy188III TCNNGA 9 cut(s) 295, 728, 806, 1083, 1166, 1229, 1361, 1391, 1521
Hpy8I GTNNAC 4 cut(s) 256, 303, 914, 1173
Hpy99I CGWCG 3 cut(s) 886, 1317, 1405
HpyAV CCTTC 7 cut(s) 120, 166, 181, 711, 1136, 1367, 1417
HpyCH4III ACNGT 4 cut(s) 757, 886, 918, 1303
HpyCH4IV ACGT 3 cut(s) 249, 622, 1315
HpyCH4V TGCA 7 cut(s) 383, 976, 1310, 1367, 1372, 1417, 1447
HpyF10VI GCNNNNNNNGC 5 cut(s) 316, 344, 376, 931, 1373
HpyF3I CTNAG 7 cut(s) 339, 365, 432, 555, 773, 873, 1434
HpySE526I ACGT 3 cut(s) 249, 622, 1315
Hsp92I GRCGYC 1 cut(s) 144
HspAI GCGC 1 cut(s) 144
KasI GGCGCC 1 cut(s) 143
Kpn2I TCCGGA 1 cut(s) 1390
Kzo9I GATC 7 cut(s) 125, 285, 322, 616, 1101, 1110, 1517
LmnI GCTCC 2 cut(s) 212, 973
Lsp1109I GCAGC 3 cut(s) 408, 1234, 1339
LweI GCATC 2 cut(s) 1339, 1354
MaeI CTAG 1 cut(s) 1487
MaeII ACGT 3 cut(s) 249, 622, 1315
MaeIII GTNAC 3 cut(s) 721, 1229, 1460
MalI GATC 7 cut(s) 127, 287, 324, 618, 1103, 1112, 1519
MbiI CCGCTC 1 cut(s) 934
MboI GATC 7 cut(s) 125, 285, 322, 616, 1101, 1110, 1517
MboII GAAGA 2 cut(s) 835, 1502
MflI RGATCY 2 cut(s) 125, 1110
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 3 cut(s) 164, 390, 1014
Mly113I GGCGCC 1 cut(s) 144
MmeI TCCRAC 6 cut(s) 153, 201, 234, 263, 1261, 1419
MroI TCCGGA 1 cut(s) 1390
MroXI GAANNNNTTC 1 cut(s) 865
MseI TTAA 6 cut(s) 509, 707, 839, 1242, 1334, 1469
MspA1I CMGCKG 1 cut(s) 84
MspI CCGG 4 cut(s) 123, 134, 141, 1391
MspR9I CCNGG 1 cut(s) 134
Mva1269I GAATGC 1 cut(s) 589
MwoI GCNNNNNNNGC 5 cut(s) 316, 344, 376, 931, 1373
NarI GGCGCC 1 cut(s) 144
NciI CCSGG 1 cut(s) 134
NdeII GATC 7 cut(s) 125, 285, 322, 616, 1101, 1110, 1517
NlaIV GGNNCC 7 cut(s) 95, 96, 127, 145, 1055, 1147, 1175
NmuCI GTSAC 3 cut(s) 721, 1229, 1460
NspI RCATGY 5 cut(s) 442, 1195, 1417, 1447, 1468
PceI AGGCCT 1 cut(s) 1076
PciI ACATGT 1 cut(s) 1464
PctI GAATGC 1 cut(s) 589
PdmI GAANNNNTTC 1 cut(s) 865
PfeI GAWTC 4 cut(s) 14, 137, 481, 845
PflMI CCANNNNNTGG 1 cut(s) 495
PkrI GCNGC 6 cut(s) 86, 148, 423, 936, 1249, 1354
PluTI GGCGCC 1 cut(s) 147
PpuMI RGGWCCY 1 cut(s) 949
PscI ACATGT 1 cut(s) 1464
Psp1406I AACGTT 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 949
PspN4I GGNNCC 7 cut(s) 95, 96, 127, 145, 1055, 1147, 1175
PspOMI GGGCCC 1 cut(s) 93
PspPI GGNCC 9 cut(s) 93, 94, 318, 498, 559, 949, 1053, 1090, 1173
PspPPI RGGWCCY 1 cut(s) 949
PstI CTGCAG 1 cut(s) 978
PstNI CAGNNNCTG 1 cut(s) 1352
PsuI RGATCY 2 cut(s) 125, 1110
RsaI GTAC 4 cut(s) 40, 398, 437, 553
RsaNI GTAC 4 cut(s) 39, 397, 436, 552
SaqAI TTAA 6 cut(s) 509, 707, 839, 1242, 1334, 1469
SatI GCNGC 6 cut(s) 85, 147, 422, 935, 1248, 1353
Sau3AI GATC 7 cut(s) 125, 285, 322, 616, 1101, 1110, 1517
Sau96I GGNCC 9 cut(s) 93, 94, 318, 498, 559, 949, 1053, 1090, 1173
ScaI AGTACT 2 cut(s) 40, 553
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 1 cut(s) 97
SfaNI GCATC 2 cut(s) 1339, 1354
SfcI CTRYAG 4 cut(s) 670, 742, 974, 1129
SfoI GGCGCC 1 cut(s) 145
SinI GGWCC 3 cut(s) 949, 1090, 1173
Sse9I AATT 3 cut(s) 164, 390, 1014
SseBI AGGCCT 1 cut(s) 1076
SsiI CCGC 8 cut(s) 84, 120, 147, 152, 189, 277, 934, 1046
SspDI GGCGCC 1 cut(s) 143
SspMI CTAG 1 cut(s) 1487
StuI AGGCCT 1 cut(s) 1076
StyD4I CCNGG 1 cut(s) 132
TaaI ACNGT 4 cut(s) 757, 886, 918, 1303
TaiI ACGT 3 cut(s) 252, 625, 1318
TaqI TCGA 2 cut(s) 1084, 1360
TasI AATT 3 cut(s) 164, 390, 1014
TatI WGTACW 3 cut(s) 38, 435, 551
TauI GCSGC 3 cut(s) 87, 149, 937
TfiI GAWTC 4 cut(s) 14, 137, 481, 845
Tru1I TTAA 6 cut(s) 509, 707, 839, 1242, 1334, 1469
Tru9I TTAA 6 cut(s) 509, 707, 839, 1242, 1334, 1469
TscAI CASTG 4 cut(s) 479, 760, 978, 1306
TseFI GTSAC 3 cut(s) 721, 1229, 1460
TseI GCWGC 3 cut(s) 421, 1247, 1352
Tsp45I GTSAC 3 cut(s) 721, 1229, 1460
TspDTI ATGAA 5 cut(s) 512, 618, 1155, 1261, 1488
TspGWI ACGGA 1 cut(s) 555
TspRI CASTG 4 cut(s) 479, 760, 978, 1306
Van91I CCANNNNNTGG 1 cut(s) 495
VpaK11BI GGWCC 3 cut(s) 949, 1090, 1173
XapI RAATTY 2 cut(s) 164, 1014
XceI RCATGY 5 cut(s) 442, 1195, 1417, 1447, 1468
XmiI GTMKAC 1 cut(s) 255
XmnI GAANNNNTTC 1 cut(s) 865
XspI CTAG 1 cut(s) 1487
ZrmI AGTACT 2 cut(s) 40, 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.