Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003677

Physical Location & Seq

Genomic Coordinates Reverse (-)

41284673 .. 41289952

Gene Structure 5280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG245500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGCCTACTGATACTTTAGCCAAGCATTTGTTTCACTGGGAGAATCAAACCATTGAATGGGCCATGCGTTTAAGAGTAGCTCTTCATATTGCTGAAGCTTTAGATTATTGTAGTACTGAGGGCCGTCCATTATACCATGATTTGAATGCTTATAGAGTTCTCTTTGATGAGGATGGTGATCCACGTCTTTCATGTTTTGGCTTGATGAGAAATAGTAGGGATGGGAAGAGTTATAGCACAAATCTGGCCTATACACCACCAGAGTACTTAAGAAATGGAAGGGTCACTCCAGAAAGTGTTATCTACAGTTTTGGAACTGTCCTTCTAGACTTGCTAAGTGGAAAGCACATCCCTCCAAGTCATGCTCTTGATATGATACGGGGTAAGAATATCATTCTCTTGATGGATTCACATTTGGAGGGAAATTTTTCTACTGAGGAAGCGACATTGGTTGTCAATCTTGCCTCTCAATGTTTGCAGTATGAGCCCAGAGAGCGGCCTAATAGAAAGGACCTTGTTGCGACACTTGCTCCACTGCAGACCAAACCTGATGTTCCATCTTATGTCATGCTTGGAATTCCGAAGCATGAGGAAGCCCCACCAACCCCACAACGGCCCCTTTCAGCAATGGGTGAGGCCTGCTCTCGAATGGACCTCACAGCGATCCATCAGATCTTGGTTATGACACACTACAGAGATGACGAAGGAACCAATGAGTTATCCTTCCAAGAGTGGACTCAACAGATGAGAGACATGTTGGAAGCAAGGAAGCGAGGGGACTATGCGTTTCGTGACAAAGATTTTAAAGCTGCCATTGACTGCTACTCCCAGTTCATAGATGTTGGAACTATGGTGTCCCCCACTGTTTTTGCACGACGCAGTTTATGCTATCTGTTAAACGAGCAACCAGATGCTGCCCTTCGAGATGCAATGCAAGCTCAATGTGTCTATCCAGAGTGGCCGACGGCCTTCTACATGCAGTCAGTTGCTCTTGCCAAGCTGGACATGCACAAGGACGCTGGTGACATGTTAAATGAAGCAACTACACTGGAAGAAAAGAGGCAAAGAGGTGGCAGGGGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

361

Amino Acids

41.09

Weight (kDa)

5.51

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	12 - 176	4.9e-14	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	14 - 173	8.6e-14	Protein kinase domain
TPR_BSK1_C	PF25575	212 - 328	1.7e-61	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35230
fragaria_vesca	FvH4_2g16320 FvH4_2g37600 FvH4_2g37600
malus_domestica	MD05G1131400.v1.1 MD06G1017800.v1.1 MD08G1003600.v1.1 MD10G1134600.v1.1
prunus_persica	Prupe.1G355500_v2.0.a1 Prupe.1G355500_v2.0.a1 Prupe.8G176100_v2.0.a1 Prupe.8G176100_v2.0.a1
pyrus_communis	pycom05g12830 pycom08g00280 pycom10g11610 pycom15g00220
rosa_chinensis	RchiOBHm_Chr6g0280081 RchiOBHm_Chr6g0304131
rosa_laevigata	RLG00000011012 RLG00000013092
rosa_multiflora	Rmu_sc0004617.1_g000013 Rmu_ssc0000218.1_g000005
rosa_roxburghii	Rroxscaffold_7G00164040 Rroxscaffold_7G00188430
rosa_rugosa	Rorug06G0129900 Rorug06G0327900
rosa_samantha	Rh6AG239900 Rh6AG441900 Rh6BG243800 Rh6BG460900 Rh6CG245500 Rh6CG454100 Rh6DG236400
rosa_wichuraiana	Rw6G020920 Rw6G038300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	57
AccBSI	CCGCTC	1 cut(s)	496
AciI	CCGC	1 cut(s)	496
AclWI	GGATC	2 cut(s)	173, 658
AcoI	YGGCCR	1 cut(s)	959
AcsI	RAATTY	2 cut(s)	424, 576
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	2 cut(s)	115, 266
AfiI	CCNNNNNNNGG	3 cut(s)	57, 495, 612
AflII	CTTAAG	1 cut(s)	268
AflIII	ACRYGT	2 cut(s)	753, 1026
AgsI	TTSAA	2 cut(s)	56, 145
AjiI	CACGTC	1 cut(s)	185
AluBI	AGCT	5 cut(s)	80, 98, 809, 938, 1000
AluI	AGCT	5 cut(s)	80, 98, 809, 938, 1000
Alw26I	GTCTC	1 cut(s)	744
AlwI	GGATC	2 cut(s)	173, 658
AlwNI	CAGNNNCTG	1 cut(s)	914
AoxI	GGCC	8 cut(s)	60, 121, 246, 497, 614, 636, 959, 966
ApeKI	GCWGC	2 cut(s)	809, 914
ApoI	RAATTY	2 cut(s)	424, 576
Asp700I	GAANNNNTTC	1 cut(s)	427
AspS9I	GGNCC	5 cut(s)	60, 121, 511, 615, 652
AsuHPI	GGTGA	3 cut(s)	188, 644, 1034
AvaII	GGWCC	2 cut(s)	511, 652
BanII	GRGCYC	1 cut(s)	489
BbvI	GCAGC	2 cut(s)	796, 901
BccI	CCATC	5 cut(s)	167, 215, 397, 565, 675
BceAI	ACGGC	3 cut(s)	108, 629, 981
BcoDI	GTCTC	1 cut(s)	744
BfaI	CTAG	1 cut(s)	326
BfmI	CTRYAG	3 cut(s)	304, 536, 691
BfrI	CTTAAG	1 cut(s)	268
BglII	AGATCT	1 cut(s)	672
BisI	GCNGC	3 cut(s)	497, 810, 915
BlsI	GCNGC	3 cut(s)	498, 811, 916
BmcAI	AGTACT	2 cut(s)	115, 266
Bme18I	GGWCC	2 cut(s)	511, 652
BmgBI	CACGTC	1 cut(s)	185
BmgT120I	GGNCC	5 cut(s)	60, 121, 511, 615, 652
BmiI	GGNNCC	2 cut(s)	617, 709
BmrI	ACTGGG	2 cut(s)	46, 823
BmsI	GCATC	2 cut(s)	901, 916
BmuI	ACTGGG	2 cut(s)	46, 823
BplI	GAGNNNNNCTC	2 cut(s)	626, 658
BpmI	CTGGAG	1 cut(s)	273
BsaBI	GATNNNNATC	1 cut(s)	177
BsaXI	ACNNNNNCTCC	4 cut(s)	514, 544, 809, 839
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 495, 612
Bse1I	ACTGG	3 cut(s)	41, 829, 1053
Bse3DI	GCAATG	2 cut(s)	633, 936
Bse8I	GATNNNNATC	1 cut(s)	177
BseGI	GGATG	3 cut(s)	178, 226, 348
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	3 cut(s)	57, 495, 612
BseMI	GCAATG	2 cut(s)	633, 936
BseMII	CTCAG	2 cut(s)	108, 426
BseNI	ACTGG	3 cut(s)	41, 829, 1053
BseXI	GCAGC	2 cut(s)	796, 901
BshFI	GGCC	8 cut(s)	62, 123, 248, 499, 616, 638, 961, 968
BslFI	GGGAC	2 cut(s)	791, 841
BslI	CCNNNNNNNGG	3 cut(s)	57, 495, 612
BsmAI	GTCTC	1 cut(s)	744
BsmFI	GGGAC	2 cut(s)	791, 841
BsmI	GAATGC	1 cut(s)	151
BsnI	GGCC	8 cut(s)	62, 123, 248, 499, 616, 638, 961, 968
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	4 cut(s)	178, 663, 672, 1079
BspACI	CCGC	1 cut(s)	496
BspANI	GGCC	8 cut(s)	62, 123, 248, 499, 616, 638, 961, 968
BspCNI	CTCAG	2 cut(s)	109, 427
BspHI	TCATGA	1 cut(s)	1082
BspLI	GGNNCC	2 cut(s)	617, 709
BspMAI	CTGCAG	1 cut(s)	540
BspPI	GGATC	2 cut(s)	173, 658
BspQI	GCTCTTC	1 cut(s)	87
BspTI	CTTAAG	1 cut(s)	268
BsrBI	CCGCTC	1 cut(s)	496
BsrDI	GCAATG	2 cut(s)	633, 936
BsrI	ACTGG	3 cut(s)	41, 829, 1053
BssMI	GATC	4 cut(s)	178, 663, 672, 1079
Bst4CI	ACNGT	3 cut(s)	308, 319, 865
Bst6I	CTCTTC	2 cut(s)	87, 221
BstAFI	CTTAAG	1 cut(s)	268
BstAPI	GCANNNNNTGC	1 cut(s)	885
BstC8I	GCNNGC	2 cut(s)	640, 936
BstDEI	CTNAG	3 cut(s)	117, 335, 435
BstF5I	GGATG	3 cut(s)	178, 226, 348
BstKTI	GATC	4 cut(s)	181, 666, 675, 1082
BstMAI	GTCTC	1 cut(s)	744
BstMBI	GATC	4 cut(s)	178, 663, 672, 1079
BstMWI	GCNNNNNNNGC	6 cut(s)	484, 493, 527, 885, 935, 1006
BstNSI	RCATGY	4 cut(s)	757, 979, 1009, 1030
BstSFI	CTRYAG	3 cut(s)	304, 536, 691
BstV1I	GCAGC	2 cut(s)	796, 901
BstX2I	RGATCY	1 cut(s)	672
BstYI	RGATCY	1 cut(s)	672
BsuRI	GGCC	8 cut(s)	62, 123, 248, 499, 616, 638, 961, 968
BtrI	CACGTC	1 cut(s)	185
BtsCI	GGATG	3 cut(s)	178, 226, 348
BtsI	GCAGTG	1 cut(s)	533
BtsIMutI	CAGTG	4 cut(s)	34, 533, 861, 1046
Cac8I	GCNNGC	2 cut(s)	640, 936
CaiI	CAGNNNCTG	1 cut(s)	914
CciI	TCATGA	1 cut(s)	1082
Cfr13I	GGNCC	5 cut(s)	60, 121, 511, 615, 652
CseI	GACGC	2 cut(s)	885, 1025
Csp6I	GTAC	2 cut(s)	114, 265
CspCI	CAANNNNNGTGG	2 cut(s)	850, 885
CviQI	GTAC	2 cut(s)	114, 265
DdeI	CTNAG	3 cut(s)	117, 335, 435
DpnI	GATC	4 cut(s)	180, 665, 674, 1081
DpnII	GATC	4 cut(s)	178, 663, 672, 1079
DraI	TTTAAA	1 cut(s)	805
EaeI	YGGCCR	1 cut(s)	959
Eam1104I	CTCTTC	2 cut(s)	87, 221
EarI	CTCTTC	2 cut(s)	87, 221
Eco147I	AGGCCT	1 cut(s)	638
Eco24I	GRGCYC	1 cut(s)	489
Eco47I	GGWCC	2 cut(s)	511, 652
Eco57I	CTGAAG	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	511
EcoRI	GAATTC	1 cut(s)	576
EcoT38I	GRGCYC	1 cut(s)	489
FaqI	GGGAC	2 cut(s)	791, 841
Fnu4HI	GCNGC	3 cut(s)	497, 810, 915
FokI	GGATG	3 cut(s)	185, 233, 335
FriOI	GRGCYC	1 cut(s)	489
Fsp4HI	GCNGC	3 cut(s)	497, 810, 915
FspBI	CTAG	1 cut(s)	326
GluI	GCNGC	3 cut(s)	497, 810, 915
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	8 cut(s)	62, 123, 248, 499, 616, 638, 961, 968
HgaI	GACGC	2 cut(s)	885, 1025
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	3 cut(s)	43, 407, 736
HphI	GGTGA	3 cut(s)	188, 644, 1034
Hpy166II	GTNNAC	1 cut(s)	735
Hpy188I	TCNGA	2 cut(s)	582, 672
Hpy188III	TCNNGA	9 cut(s)	290, 326, 368, 400, 645, 791, 923, 953, 1083
Hpy8I	GTNNAC	1 cut(s)	735
Hpy99I	CGWCG	2 cut(s)	879, 967
HpyAV	CCTTC	6 cut(s)	273, 332, 698, 733, 929, 979
HpyCH4III	ACNGT	3 cut(s)	308, 319, 865
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	7 cut(s)	478, 538, 872, 929, 934, 979, 1009
HpyF10VI	GCNNNNNNNGC	6 cut(s)	484, 493, 527, 885, 935, 1006
HpyF3I	CTNAG	3 cut(s)	117, 335, 435
HpySE526I	ACGT	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	178, 663, 672, 1079
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	535
Lsp1109I	GCAGC	2 cut(s)	796, 901
LweI	GCATC	2 cut(s)	901, 916
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	3 cut(s)	283, 791, 1022
MalI	GATC	4 cut(s)	180, 665, 674, 1081
MbiI	CCGCTC	1 cut(s)	496
MboI	GATC	4 cut(s)	178, 663, 672, 1079
MboII	GAAGA	3 cut(s)	74, 238, 1064
MflI	RGATCY	1 cut(s)	672
MhlI	GDGCHC	1 cut(s)	489
MluCI	AATT	2 cut(s)	424, 576
MlyI	GAGTC	1 cut(s)	730
MmeI	TCCRAC	2 cut(s)	738, 823
MroXI	GAANNNNTTC	1 cut(s)	427
MseI	TTAA	5 cut(s)	71, 269, 804, 896, 1031
MspCI	CTTAAG	1 cut(s)	268
Mva1269I	GAATGC	1 cut(s)	151
MwoI	GCNNNNNNNGC	6 cut(s)	484, 493, 527, 885, 935, 1006
NdeII	GATC	4 cut(s)	178, 663, 672, 1079
NlaIV	GGNNCC	2 cut(s)	617, 709
NmuCI	GTSAC	3 cut(s)	283, 791, 1022
NspI	RCATGY	4 cut(s)	757, 979, 1009, 1030
PagI	TCATGA	1 cut(s)	1082
PceI	AGGCCT	1 cut(s)	638
PciI	ACATGT	2 cut(s)	753, 1026
PciSI	GCTCTTC	1 cut(s)	87
PctI	GAATGC	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	427
PfeI	GAWTC	2 cut(s)	43, 407
PflMI	CCANNNNNTGG	1 cut(s)	57
PkrI	GCNGC	3 cut(s)	498, 811, 916
PleI	GAGTC	1 cut(s)	730
PpsI	GAGTC	1 cut(s)	730
PpuMI	RGGWCCY	1 cut(s)	511
PscI	ACATGT	2 cut(s)	753, 1026
Psp5II	RGGWCCY	1 cut(s)	511
PspN4I	GGNNCC	2 cut(s)	617, 709
PspPI	GGNCC	5 cut(s)	60, 121, 511, 615, 652
PspPPI	RGGWCCY	1 cut(s)	511
PstI	CTGCAG	1 cut(s)	540
PstNI	CAGNNNCTG	1 cut(s)	914
PsuI	RGATCY	1 cut(s)	672
RsaI	GTAC	2 cut(s)	115, 266
RsaNI	GTAC	2 cut(s)	114, 265
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	5 cut(s)	71, 269, 804, 896, 1031
SatI	GCNGC	3 cut(s)	497, 810, 915
Sau3AI	GATC	4 cut(s)	178, 663, 672, 1079
Sau96I	GGNCC	5 cut(s)	60, 121, 511, 615, 652
ScaI	AGTACT	2 cut(s)	115, 266
SchI	GAGTC	1 cut(s)	730
SduI	GDGCHC	1 cut(s)	489
SfaNI	GCATC	2 cut(s)	901, 916
SfcI	CTRYAG	3 cut(s)	304, 536, 691
SinI	GGWCC	2 cut(s)	511, 652
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
Sse9I	AATT	2 cut(s)	424, 576
SseBI	AGGCCT	1 cut(s)	638
SsiI	CCGC	1 cut(s)	496
SspMI	CTAG	1 cut(s)	326
StuI	AGGCCT	1 cut(s)	638
TaaI	ACNGT	3 cut(s)	308, 319, 865
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	2 cut(s)	646, 922
TasI	AATT	2 cut(s)	424, 576
TatI	WGTACW	2 cut(s)	113, 264
TauI	GCSGC	1 cut(s)	499
TfiI	GAWTC	2 cut(s)	43, 407
Tru1I	TTAA	5 cut(s)	71, 269, 804, 896, 1031
Tru9I	TTAA	5 cut(s)	71, 269, 804, 896, 1031
TscAI	CASTG	4 cut(s)	41, 540, 868, 1053
TseFI	GTSAC	3 cut(s)	283, 791, 1022
TseI	GCWGC	2 cut(s)	809, 914
Tsp45I	GTSAC	3 cut(s)	283, 791, 1022
TspDTI	ATGAA	4 cut(s)	74, 180, 823, 1050
TspRI	CASTG	4 cut(s)	41, 540, 868, 1053
Van91I	CCANNNNNTGG	1 cut(s)	57
Vha464I	CTTAAG	1 cut(s)	268
VpaK11BI	GGWCC	2 cut(s)	511, 652
XapI	RAATTY	2 cut(s)	424, 576
XbaI	TCTAGA	1 cut(s)	325
XceI	RCATGY	4 cut(s)	757, 979, 1009, 1030
XmnI	GAANNNNTTC	1 cut(s)	427
XspI	CTAG	1 cut(s)	326
ZrmI	AGTACT	2 cut(s)	115, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.