Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003677

Physical Location & Seq

Genomic Coordinates Forward (+)

48107774 .. 48110517

Gene Structure 2744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0327900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCCATGGCTGTTCAAGTAGCAAGTCTCTGGCTACCCAGTTCTTCTTCCACAACCCCAACTCACTTAAACCTTCTTCATTCCCTTGGAAGCAAATCAAAGCCACCATCATCGTCTTCCTCAGCTCTCTCTGCTACTTCTTCACTCTCATCCCCAGCTCCCACTATTCAGATTGTTGGTGGGAGAAATCCGACTTGGAATGAAAACGGAAATGCCAATTCTGATGGTTTTGAAGATGATTGGTATGACCTGGATACTGATCTCTATCACTGGACCAAGGCACTGCGTCCTGTTCAGTGGTATCCTGGTCATATTGCCAAAACTGAGAAAGAACTGAAAACACAACTCAAGTTGATGGATGTAGTGATTGAGGTTCGAGATGCGAGAATTCCATTGTCCACTAGTCATCCACAGATGGATTTATGGCTTGGTAATAGGAGAAGAGTTTTGGTGTTGAATAGAGAAGACATGATTTCCACGGCAGACCGGAATGCTTGGGCGACCTATTTTGCAAGGCAAGGGACGAAAGTTGTCTTTTCGAATGGCAAACTTGGAATGGGCGCTATGAAGCTAGGGCGGTTAGCTAAAGCATTAGCAGCAGATGTAAACGTCAGACGCAGAGCCAAAGGACTTCTTCCTCGTGCGGTACGAGCTGGGATTGTTGGATATCCAAATGTTGGCAAATCGTCTTTGATTAACCGTTTGCTGACGAGACGAATGTGTCCAGCAGCTCCAAGACCTGGAGTTACAAGAGAACTGAAGTGGGTTCATTTCGGGAAAGACCTTGAATTGCTAGATTCTCCTGGTATACTCCCAATGCGGATTAGCGATCAAACAGCAGCAATAAAGCTTGCTATTTGTGATGATATTGGAGAGAGATCCTATGGTGTTGTGGATATTGCAGCAATTCTTGTCCAGATGTTAGCAAGGCTTCCATCAGTGGGTATAAAGACTCTTAACAAACGCTACAAGATGGATGCGGATGGTTACTGTGGTAAAACATTTGTTCAGAAGCTTGCAGTTCACTTGTTCAATGGAGACACACATCAAGCCGCATTTCGTGTTCTGACGGATTTTCGAAAAGGGAGATTTGGTTGGATTGCGCTGGAGAGGCCTCCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

374

Amino Acids

41.37

Weight (kDa)

10.05

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	218 - 272	5.2e-15	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35230
fragaria_vesca	FvH4_2g16320 FvH4_2g37600 FvH4_2g37600
malus_domestica	MD05G1131400.v1.1 MD06G1017800.v1.1 MD08G1003600.v1.1 MD10G1134600.v1.1
prunus_persica	Prupe.1G355500_v2.0.a1 Prupe.1G355500_v2.0.a1 Prupe.8G176100_v2.0.a1 Prupe.8G176100_v2.0.a1
pyrus_communis	pycom05g12830 pycom08g00280 pycom10g11610 pycom15g00220
rosa_chinensis	RchiOBHm_Chr6g0280081 RchiOBHm_Chr6g0304131
rosa_laevigata	RLG00000011012 RLG00000013092
rosa_multiflora	Rmu_sc0004617.1_g000013 Rmu_ssc0000218.1_g000005
rosa_roxburghii	Rroxscaffold_7G00164040 Rroxscaffold_7G00188430
rosa_rugosa	Rorug06G0129900 Rorug06G0327900
rosa_samantha	Rh6AG239900 Rh6AG441900 Rh6BG243800 Rh6BG460900 Rh6CG245500 Rh6CG454100 Rh6DG236400
rosa_wichuraiana	Rw6G020920 Rw6G038300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	720
AccB7I	CCANNNNNTGG	2 cut(s)	677, 740
AccI	GTMKAC	1 cut(s)	808
AciI	CCGC	5 cut(s)	577, 644, 820, 980, 1053
AclWI	GGATC	1 cut(s)	873
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	387
AcuI	CTGAAG	1 cut(s)	779
AfaI	GTAC	1 cut(s)	648
AfiI	CCNNNNNNNGG	3 cut(s)	677, 740, 941
AgsI	TTSAA	5 cut(s)	17, 233, 457, 788, 1033
AhlI	ACTAGT	1 cut(s)	401
AjnI	CCWGG	4 cut(s)	249, 304, 739, 802
AjuI	GAANNNNNNNTTGG	2 cut(s)	178, 210
AluBI	AGCT	8 cut(s)	125, 158, 571, 584, 653, 731, 850, 1015
AluI	AGCT	8 cut(s)	125, 158, 571, 584, 653, 731, 850, 1015
Alw26I	GTCTC	3 cut(s)	32, 706, 1032
AlwI	GGATC	1 cut(s)	873
AoxI	GGCC	2 cut(s)	3, 1112
ApeKI	GCWGC	4 cut(s)	596, 728, 839, 902
ApoI	RAATTY	1 cut(s)	387
AspLEI	GCGC	2 cut(s)	563, 1105
AspS9I	GGNCC	1 cut(s)	273
AsuII	TTCGAA	2 cut(s)	539, 1078
AvaII	GGWCC	1 cut(s)	273
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	639
BbsI	GAAGAC	2 cut(s)	108, 471
BbvCI	CCTCAGC	1 cut(s)	121
BbvI	GCAGC	4 cut(s)	608, 740, 851, 914
BccI	CCATC	7 cut(s)	115, 218, 349, 409, 943, 967, 977
BceAI	ACGGC	1 cut(s)	495
BciT130I	CCWGG	4 cut(s)	251, 306, 741, 804
BciVI	GTATCC	2 cut(s)	247, 312
BcoDI	GTCTC	3 cut(s)	32, 706, 1032
BcuI	ACTAGT	1 cut(s)	401
BfaI	CTAG	3 cut(s)	402, 572, 794
BfoI	RGCGCY	1 cut(s)	564
BfuI	GTATCC	2 cut(s)	247, 312
BisI	GCNGC	5 cut(s)	597, 729, 840, 903, 1053
BlsI	GCNGC	5 cut(s)	598, 730, 841, 904, 1054
Bme1390I	CCNGG	4 cut(s)	251, 306, 741, 804
Bme18I	GGWCC	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	273
BmrFI	CCNGG	4 cut(s)	251, 306, 741, 804
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	2 cut(s)	370, 967
BmuI	ACTGGG	1 cut(s)	33
BpiI	GAAGAC	2 cut(s)	108, 471
BpmI	CTGGAG	1 cut(s)	762
Bpu10I	CCTNAGC	1 cut(s)	121
Bpu14I	TTCGAA	2 cut(s)	539, 1078
BpuEI	CTTGAG	1 cut(s)	332
BsaBI	GATNNNNATC	2 cut(s)	258, 264
BsaJI	CCNNGG	4 cut(s)	6, 85, 276, 477
BsaWI	WCCGGW	1 cut(s)	486
BsaXI	ACNNNNNCTCC	2 cut(s)	1078, 1108
Bsc4I	CCNNNNNNNGG	3 cut(s)	677, 740, 941
Bse1I	ACTGG	2 cut(s)	39, 275
Bse8I	GATNNNNATC	2 cut(s)	258, 264
BseBI	CCWGG	4 cut(s)	251, 306, 741, 804
BseDI	CCNNGG	4 cut(s)	6, 85, 276, 477
BseGI	GGATG	5 cut(s)	149, 364, 406, 982, 988
BseJI	GATNNNNATC	2 cut(s)	258, 264
BseLI	CCNNNNNNNGG	3 cut(s)	677, 740, 941
BseMII	CTCAG	2 cut(s)	135, 315
BseNI	ACTGG	2 cut(s)	39, 275
BseXI	GCAGC	4 cut(s)	608, 740, 851, 914
BseYI	CCCAGC	2 cut(s)	154, 653
BshFI	GGCC	2 cut(s)	5, 1114
BsiSI	CCGG	1 cut(s)	487
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	3 cut(s)	677, 740, 941
BsmAI	GTCTC	3 cut(s)	32, 706, 1032
BsmBI	CGTCTC	1 cut(s)	706
BsmFI	GGGAC	1 cut(s)	535
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	2 cut(s)	5, 1114
Bsp119I	TTCGAA	2 cut(s)	539, 1078
Bsp143I	GATC	3 cut(s)	259, 829, 878
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	5 cut(s)	577, 644, 820, 980, 1053
BspANI	GGCC	2 cut(s)	5, 1114
BspCNI	CTCAG	2 cut(s)	134, 316
BspPI	GGATC	1 cut(s)	873
BspT104I	TTCGAA	2 cut(s)	539, 1078
BsrI	ACTGG	2 cut(s)	39, 275
BssECI	CCNNGG	4 cut(s)	6, 85, 276, 477
BssMI	GATC	3 cut(s)	259, 829, 878
BssNAI	GTATAC	1 cut(s)	809
BssSI	CACGAG	1 cut(s)	639
BssT1I	CCWWGG	3 cut(s)	6, 85, 276
Bst1107I	GTATAC	1 cut(s)	809
Bst2BI	CACGAG	1 cut(s)	639
Bst2UI	CCWGG	4 cut(s)	251, 306, 741, 804
Bst4CI	ACNGT	2 cut(s)	701, 992
Bst6I	CTCTTC	1 cut(s)	436
BstBI	TTCGAA	2 cut(s)	539, 1078
BstC8I	GCNNGC	2 cut(s)	852, 1017
BstDEI	CTNAG	2 cut(s)	121, 324
BstDSI	CCRYGG	2 cut(s)	6, 477
BstF5I	GGATG	5 cut(s)	149, 364, 406, 982, 988
BstH2I	RGCGCY	1 cut(s)	564
BstHHI	GCGC	2 cut(s)	563, 1105
BstKTI	GATC	3 cut(s)	262, 832, 881
BstMAI	GTCTC	3 cut(s)	32, 706, 1032
BstMBI	GATC	3 cut(s)	259, 829, 878
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 596, 650, 1111
BstNI	CCWGG	4 cut(s)	251, 306, 741, 804
BstSCI	CCNGG	4 cut(s)	249, 304, 739, 802
BstV1I	GCAGC	4 cut(s)	608, 740, 851, 914
BstV2I	GAAGAC	2 cut(s)	108, 471
BstX2I	RGATCY	1 cut(s)	878
BstYI	RGATCY	1 cut(s)	878
BstZ17I	GTATAC	1 cut(s)	809
BsuI	GTATCC	2 cut(s)	247, 312
BsuRI	GGCC	2 cut(s)	5, 1114
BtgI	CCRYGG	2 cut(s)	6, 477
BtsCI	GGATG	5 cut(s)	149, 364, 406, 982, 988
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	4 cut(s)	268, 281, 302, 945
Cac8I	GCNNGC	2 cut(s)	852, 1017
CfoI	GCGC	2 cut(s)	563, 1105
Cfr13I	GGNCC	1 cut(s)	273
CseI	GACGC	2 cut(s)	275, 624
Csp6I	GTAC	1 cut(s)	647
CviAII	CATG	2 cut(s)	7, 469
CviQI	GTAC	1 cut(s)	647
DdeI	CTNAG	2 cut(s)	121, 324
DpnI	GATC	3 cut(s)	261, 831, 880
DpnII	GATC	3 cut(s)	259, 829, 878
DrdI	GACNNNNNNGTC	1 cut(s)	720
DseDI	GACNNNNNNGTC	1 cut(s)	720
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	436
Eco130I	CCWWGG	3 cut(s)	6, 85, 276
Eco147I	AGGCCT	1 cut(s)	1114
Eco32I	GATATC	1 cut(s)	668
Eco47I	GGWCC	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	779
EcoRI	GAATTC	1 cut(s)	387
EcoRII	CCWGG	4 cut(s)	249, 304, 739, 802
EcoRV	GATATC	1 cut(s)	668
EcoT14I	CCWWGG	3 cut(s)	6, 85, 276
ErhI	CCWWGG	3 cut(s)	6, 85, 276
Esp3I	CGTCTC	1 cut(s)	706
FaeI	CATG	2 cut(s)	10, 472
FaiI	YATR	9 cut(s)	8, 246, 312, 424, 470, 566, 809, 885, 947
FalI	AAGNNNNNCTT	2 cut(s)	618, 650
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	2 cut(s)	6, 468
FblI	GTMKAC	1 cut(s)	808
Fnu4HI	GCNGC	5 cut(s)	597, 729, 840, 903, 1053
FokI	GGATG	5 cut(s)	136, 371, 393, 989, 995
Fsp4HI	GCNGC	5 cut(s)	597, 729, 840, 903, 1053
FspBI	CTAG	3 cut(s)	402, 572, 794
GlaI	GCGC	2 cut(s)	562, 1104
GluI	GCNGC	5 cut(s)	597, 729, 840, 903, 1053
GsaI	CCCAGC	2 cut(s)	158, 657
GsuI	CTGGAG	1 cut(s)	762
HaeII	RGCGCY	1 cut(s)	564
HaeIII	GGCC	2 cut(s)	5, 1114
HapII	CCGG	1 cut(s)	487
HgaI	GACGC	2 cut(s)	275, 624
HhaI	GCGC	2 cut(s)	563, 1105
Hin1II	CATG	2 cut(s)	10, 472
Hin6I	GCGC	2 cut(s)	561, 1103
HinP1I	GCGC	2 cut(s)	561, 1103
HindIII	AAGCTT	2 cut(s)	848, 1013
HinfI	GANTC	2 cut(s)	797, 952
HpaII	CCGG	1 cut(s)	487
Hpy166II	GTNNAC	4 cut(s)	399, 607, 809, 1024
Hpy188I	TCNGA	6 cut(s)	171, 192, 223, 614, 1011, 1068
Hpy188III	TCNNGA	3 cut(s)	377, 775, 916
Hpy8I	GTNNAC	4 cut(s)	399, 607, 809, 1024
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	2 cut(s)	701, 992
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	3 cut(s)	512, 902, 1019
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 596, 650, 1111
HpyF3I	CTNAG	2 cut(s)	121, 324
HpySE526I	ACGT	1 cut(s)	609
Hsp92II	CATG	2 cut(s)	10, 472
HspAI	GCGC	2 cut(s)	561, 1103
Kzo9I	GATC	3 cut(s)	259, 829, 878
LmnI	GCTCC	2 cut(s)	163, 736
Lsp1109I	GCAGC	4 cut(s)	608, 740, 851, 914
LweI	GCATC	2 cut(s)	370, 967
MaeI	CTAG	3 cut(s)	402, 572, 794
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	2 cut(s)	745, 986
MalI	GATC	3 cut(s)	261, 831, 880
MboI	GATC	3 cut(s)	259, 829, 878
MboII	GAAGA	9 cut(s)	36, 39, 68, 108, 132, 245, 453, 476, 626
MflI	RGATCY	1 cut(s)	878
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	217, 387, 788, 906
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	946
MmeI	TCCRAC	3 cut(s)	215, 643, 1076
MnlI	CCTC	5 cut(s)	130, 364, 648, 1104, 1125
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	68, 696, 957
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	487
MspR9I	CCNGG	4 cut(s)	251, 306, 741, 804
Mva1269I	GAATGC	1 cut(s)	496
MvaI	CCWGG	4 cut(s)	251, 306, 741, 804
MwoI	GCNNNNNNNGC	4 cut(s)	131, 596, 650, 1111
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	3 cut(s)	259, 829, 878
NlaIII	CATG	2 cut(s)	10, 472
NspV	TTCGAA	2 cut(s)	539, 1078
PceI	AGGCCT	1 cut(s)	1114
PcsI	WCGNNNNNNNCGW	1 cut(s)	646
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	1 cut(s)	797
PflMI	CCANNNNNTGG	2 cut(s)	677, 740
PkrI	GCNGC	5 cut(s)	598, 730, 841, 904, 1054
PleI	GAGTC	1 cut(s)	946
PpsI	GAGTC	1 cut(s)	946
Psp6I	CCWGG	4 cut(s)	249, 304, 739, 802
PspFI	CCCAGC	2 cut(s)	154, 653
PspGI	CCWGG	4 cut(s)	249, 304, 739, 802
PspPI	GGNCC	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	878
RsaI	GTAC	1 cut(s)	648
RsaNI	GTAC	1 cut(s)	647
SaqAI	TTAA	3 cut(s)	68, 696, 957
SatI	GCNGC	5 cut(s)	597, 729, 840, 903, 1053
Sau3AI	GATC	3 cut(s)	259, 829, 878
Sau96I	GGNCC	1 cut(s)	273
SchI	GAGTC	1 cut(s)	946
ScrFI	CCNGG	4 cut(s)	251, 306, 741, 804
SfaNI	GCATC	2 cut(s)	370, 967
SfuI	TTCGAA	2 cut(s)	539, 1078
SinI	GGWCC	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
SpeI	ACTAGT	1 cut(s)	401
Sse9I	AATT	4 cut(s)	217, 387, 788, 906
SseBI	AGGCCT	1 cut(s)	1114
SsiI	CCGC	5 cut(s)	577, 644, 820, 980, 1053
SspMI	CTAG	3 cut(s)	402, 572, 794
StuI	AGGCCT	1 cut(s)	1114
StyD4I	CCNGG	4 cut(s)	249, 304, 739, 802
StyI	CCWWGG	3 cut(s)	6, 85, 276
TaaI	ACNGT	2 cut(s)	701, 992
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	3 cut(s)	376, 539, 1078
TasI	AATT	4 cut(s)	217, 387, 788, 906
TauI	GCSGC	1 cut(s)	1055
TfiI	GAWTC	1 cut(s)	797
Tru1I	TTAA	3 cut(s)	68, 696, 957
Tru9I	TTAA	3 cut(s)	68, 696, 957
TscAI	CASTG	4 cut(s)	275, 288, 302, 945
TseI	GCWGC	4 cut(s)	596, 728, 839, 902
TspDTI	ATGAA	4 cut(s)	68, 216, 581, 758
TspGWI	ACGGA	2 cut(s)	222, 1085
TspRI	CASTG	4 cut(s)	275, 288, 302, 945
Van91I	CCANNNNNTGG	2 cut(s)	677, 740
VpaK11BI	GGWCC	1 cut(s)	273
XapI	RAATTY	1 cut(s)	387
XmiI	GTMKAC	1 cut(s)	808
XspI	CTAG	3 cut(s)	402, 572, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.