Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003677

Physical Location & Seq

Genomic Coordinates Forward (+)

125445 .. 127844

Gene Structure 2400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g00220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGAAAGGAAAATTCCACTGTTGGAGGAACAGGGAGAGAGACAGAGGCTTTGCCAGTGCAGACAGAGAGAGAACACAGGCAGGCAAGCAAGCAAGCAAGCAAGCAATGCCATTGCCATTTTATGGGGGTGCTGCGAGTCGTCTTTTATACATGCACGTCAACACCAGCACCACCCCTTGGACACCTTCAGCGCCGCCGCCGCCACCAACCGCACTCCTCAACCGTCCAACGGTCGAGCCGATGCCGCCGGAGCCGGAGCAGTGCCTGGATTCTTGGAATTCTCGCTGGCCGACTTGAAAAGCGCCACAAATAACTTCAGCTCCGACTTCATCGTTTCCGAGAGCGGTGAGAAAGCCCCCAATGTCGTCTACAAGTGCCGCCTCCAGAACCAAGATAACCGTCGTTGGATTGCCGTCAAGAAATTTTCTAAATTGGCCTGGTCTGACCCCAAGCAATTCGCCGATGAAGCTTGGGGCGTTGGGAAGCTGAGGCACAAAAGGCTTGCCAATTTGATAGGGTATTGCTGCGACGGCGACGAGAGGCTGCTGGTGGCGGAGTACATGCCTAATGATACCCTTGCCAAACATCTCTTCCACTGGGAGAATCAGACCATTGAGTGGGCTCTGCGACTAAGAGTTGCTCTGAACATTGCCGAAGCGTTGGATTACTGCAATAGTGAAGGCCGCCCGTTGTACCATGACTTAAATGCATATAGGGTTCTCTTTGATGAGAACGGTGATCCTCGGCTTTCGTGTTTTGGATTGATGAAAAACAGCAAGGATGGAAAAAGTTACAGCACCAATCTTGCGTACACACCTCCTGAATATCTAAGAAATGGAAGGGTCACTCCAGAAACTGTTACATTCAGCTTTGGGACTGTCCTTTTGGATCTGCTCAGTGGAAAACACATCCCTCCCAGTCATGCTATTGATATGATTCATGGAAAAAACATTCTTCTCTTAATGGATTCACATCTGGAGGGAAAATTTTCAACTGAAGAAGCAACGAATTGGTGTGGTCTTCGATCTTGCCTCACGATGTTTGCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

351

Amino Acids

39.36

Weight (kDa)

7.59

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	122 - 312	9.5e-22	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	122 - 305	9.2e-22	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35230
fragaria_vesca	FvH4_2g16320 FvH4_2g37600 FvH4_2g37600
malus_domestica	MD05G1131400.v1.1 MD06G1017800.v1.1 MD08G1003600.v1.1 MD10G1134600.v1.1
prunus_persica	Prupe.1G355500_v2.0.a1 Prupe.1G355500_v2.0.a1 Prupe.8G176100_v2.0.a1 Prupe.8G176100_v2.0.a1
pyrus_communis	pycom05g12830 pycom08g00280 pycom10g11610 pycom15g00220
rosa_chinensis	RchiOBHm_Chr6g0280081 RchiOBHm_Chr6g0304131
rosa_laevigata	RLG00000011012 RLG00000013092
rosa_multiflora	Rmu_sc0004617.1_g000013 Rmu_ssc0000218.1_g000005
rosa_roxburghii	Rroxscaffold_7G00164040 Rroxscaffold_7G00188430
rosa_rugosa	Rorug06G0129900 Rorug06G0327900
rosa_samantha	Rh6AG239900 Rh6AG441900 Rh6BG243800 Rh6BG460900 Rh6CG245500 Rh6CG454100 Rh6DG236400
rosa_wichuraiana	Rw6G020920 Rw6G038300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	123, 178, 618
AccBSI	CCGCTC	1 cut(s)	345
AccI	GTMKAC	1 cut(s)	369
AciI	CCGC	9 cut(s)	195, 198, 201, 211, 246, 345, 379, 554, 685
AclWI	GGATC	2 cut(s)	734, 897
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	4 cut(s)	12, 278, 422, 986
AcuI	CTGAAG	3 cut(s)	172, 301, 1017
AfaI	GTAC	3 cut(s)	560, 695, 812
AfiI	CCNNNNNNNGG	4 cut(s)	123, 178, 230, 618
AgsI	TTSAA	2 cut(s)	298, 993
AjiI	CACGTC	1 cut(s)	158
AjnI	CCWGG	2 cut(s)	265, 437
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AluBI	AGCT	4 cut(s)	321, 470, 487, 870
AluI	AGCT	4 cut(s)	321, 470, 487, 870
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	2 cut(s)	734, 897
AlwNI	CAGNNNCTG	2 cut(s)	266, 857
AoxI	GGCC	3 cut(s)	288, 435, 682
ApeKI	GCWGC	3 cut(s)	132, 525, 544
ApoI	RAATTY	4 cut(s)	12, 278, 422, 986
ArsI	GACNNNNNNTTYG	4 cut(s)	33, 65, 868, 900
Asp700I	GAANNNNTTC	1 cut(s)	988
AspLEI	GCGC	2 cut(s)	194, 305
AsuHPI	GGTGA	2 cut(s)	359, 749
BanII	GRGCYC	1 cut(s)	625
BbsI	GAAGAC	1 cut(s)	1013
BbvCI	CCTCAGC	1 cut(s)	488
BbvI	GCAGC	3 cut(s)	119, 512, 531
BccI	CCATC	1 cut(s)	776
BceAI	ACGGC	2 cut(s)	398, 547
BciT130I	CCWGG	2 cut(s)	267, 439
BcoDI	GTCTC	1 cut(s)	34
BfoI	RGCGCY	2 cut(s)	195, 306
BisI	GCNGC	9 cut(s)	133, 195, 198, 201, 246, 379, 526, 545, 685
BlsI	GCNGC	9 cut(s)	134, 196, 199, 202, 247, 380, 527, 546, 686
Bme1390I	CCNGG	2 cut(s)	267, 439
BmgBI	CACGTC	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	2 cut(s)	267, 439
BmrI	ACTGGG	2 cut(s)	607, 912
BmsI	GCATC	1 cut(s)	232
BmuI	ACTGGG	2 cut(s)	607, 912
BpiI	GAAGAC	1 cut(s)	1013
BpmI	CTGGAG	3 cut(s)	368, 834, 998
Bpu10I	CCTNAGC	1 cut(s)	488
BsaBI	GATNNNNATC	1 cut(s)	972
BsaJI	CCNNGG	2 cut(s)	177, 743
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	4 cut(s)	123, 178, 230, 618
Bse1I	ACTGG	3 cut(s)	55, 602, 918
Bse3DI	GCAATG	3 cut(s)	111, 112, 648
Bse8I	GATNNNNATC	1 cut(s)	972
BseBI	CCWGG	2 cut(s)	267, 439
BseDI	CCNNGG	2 cut(s)	177, 743
BseGI	GGATG	2 cut(s)	787, 909
BseJI	GATNNNNATC	1 cut(s)	972
BseLI	CCNNNNNNNGG	4 cut(s)	123, 178, 230, 618
BseMI	GCAATG	3 cut(s)	111, 112, 648
BseMII	CTCAG	2 cut(s)	479, 910
BseNI	ACTGG	3 cut(s)	55, 602, 918
BseRI	GAGGAG	1 cut(s)	207
BseXI	GCAGC	3 cut(s)	119, 512, 531
BsgI	GTGCAG	1 cut(s)	79
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	3 cut(s)	290, 437, 684
BsiEI	CGRYCG	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	249, 255
BslFI	GGGAC	1 cut(s)	889
BslI	CCNNNNNNNGG	4 cut(s)	123, 178, 230, 618
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	889
BsnI	GGCC	3 cut(s)	290, 437, 684
Bsp1286I	GDGCHC	1 cut(s)	625
Bsp143I	GATC	3 cut(s)	739, 889, 1025
BspACI	CCGC	9 cut(s)	195, 198, 201, 211, 246, 345, 379, 554, 685
BspANI	GGCC	3 cut(s)	290, 437, 684
BspCNI	CTCAG	2 cut(s)	480, 909
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	2 cut(s)	734, 897
BsrBI	CCGCTC	1 cut(s)	345
BsrDI	GCAATG	3 cut(s)	111, 112, 648
BsrI	ACTGG	3 cut(s)	55, 602, 918
BssECI	CCNNGG	2 cut(s)	177, 743
BssMI	GATC	3 cut(s)	739, 889, 1025
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	2 cut(s)	267, 439
Bst4CI	ACNGT	7 cut(s)	21, 225, 233, 401, 737, 859, 880
Bst6I	CTCTTC	1 cut(s)	596
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstC8I	GCNNGC	8 cut(s)	83, 87, 91, 95, 99, 103, 288, 504
BstDEI	CTNAG	4 cut(s)	488, 632, 830, 896
BstF5I	GGATG	2 cut(s)	787, 909
BstH2I	RGCGCY	2 cut(s)	195, 306
BstHHI	GCGC	2 cut(s)	194, 305
BstKTI	GATC	3 cut(s)	742, 892, 1028
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	3 cut(s)	739, 889, 1025
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	7 cut(s)	107, 200, 245, 251, 467, 499, 531
BstNI	CCWGG	2 cut(s)	267, 439
BstNSI	RCATGY	2 cut(s)	155, 565
BstSCI	CCNGG	2 cut(s)	265, 437
BstV1I	GCAGC	3 cut(s)	119, 512, 531
BstV2I	GAAGAC	1 cut(s)	1013
BstX2I	RGATCY	1 cut(s)	889
BstYI	RGATCY	1 cut(s)	889
BsuRI	GGCC	3 cut(s)	290, 437, 684
BtrI	CACGTC	1 cut(s)	158
BtsCI	GGATG	2 cut(s)	787, 909
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	5 cut(s)	17, 62, 267, 595, 904
Cac8I	GCNNGC	8 cut(s)	83, 87, 91, 95, 99, 103, 288, 504
CaiI	CAGNNNCTG	2 cut(s)	266, 857
CfoI	GCGC	2 cut(s)	194, 305
Csp6I	GTAC	3 cut(s)	559, 694, 811
CviAII	CATG	5 cut(s)	152, 562, 698, 923, 941
CviQI	GTAC	3 cut(s)	559, 694, 811
DdeI	CTNAG	4 cut(s)	488, 632, 830, 896
DpnI	GATC	3 cut(s)	741, 891, 1027
DpnII	GATC	3 cut(s)	739, 889, 1025
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	596
EarI	CTCTTC	1 cut(s)	596
EciI	GGCGGA	1 cut(s)	569
Eco130I	CCWWGG	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	625
Eco57I	CTGAAG	3 cut(s)	172, 301, 1017
EcoRI	GAATTC	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	265, 437
EcoT14I	CCWWGG	1 cut(s)	177
EcoT22I	ATGCAT	1 cut(s)	712
EcoT38I	GRGCYC	1 cut(s)	625
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	5 cut(s)	155, 565, 701, 926, 944
FaqI	GGGAC	1 cut(s)	889
FatI	CATG	5 cut(s)	151, 561, 697, 922, 940
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	9 cut(s)	133, 195, 198, 201, 246, 379, 526, 545, 685
FokI	GGATG	2 cut(s)	794, 896
FriOI	GRGCYC	1 cut(s)	625
Fsp4HI	GCNGC	9 cut(s)	133, 195, 198, 201, 246, 379, 526, 545, 685
GlaI	GCGC	2 cut(s)	193, 304
GluI	GCNGC	9 cut(s)	133, 195, 198, 201, 246, 379, 526, 545, 685
GsuI	CTGGAG	3 cut(s)	368, 834, 998
HaeII	RGCGCY	2 cut(s)	195, 306
HaeIII	GGCC	3 cut(s)	290, 437, 684
HapII	CCGG	2 cut(s)	249, 255
HhaI	GCGC	2 cut(s)	194, 305
Hin1II	CATG	5 cut(s)	155, 565, 701, 926, 944
Hin6I	GCGC	2 cut(s)	192, 303
HinP1I	GCGC	2 cut(s)	192, 303
HincII	GTYRAC	1 cut(s)	161
HindII	GTYRAC	1 cut(s)	161
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	5 cut(s)	137, 270, 604, 937, 968
HpaII	CCGG	2 cut(s)	249, 255
HphI	GGTGA	2 cut(s)	359, 749
Hpy166II	GTNNAC	3 cut(s)	161, 370, 813
Hpy188I	TCNGA	5 cut(s)	325, 340, 445, 609, 645
Hpy188III	TCNNGA	6 cut(s)	385, 418, 821, 851, 977, 1036
Hpy8I	GTNNAC	3 cut(s)	161, 370, 813
Hpy99I	CGWCG	3 cut(s)	405, 533, 539
HpyAV	CCTTC	3 cut(s)	196, 674, 834
HpyCH4III	ACNGT	7 cut(s)	21, 225, 233, 401, 737, 859, 880
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	5 cut(s)	60, 155, 672, 710, 1046
HpyF10VI	GCNNNNNNNGC	7 cut(s)	107, 200, 245, 251, 467, 499, 531
HpyF3I	CTNAG	4 cut(s)	488, 632, 830, 896
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	5 cut(s)	155, 565, 701, 926, 944
HspAI	GCGC	2 cut(s)	192, 303
Kzo9I	GATC	3 cut(s)	739, 889, 1025
LmnI	GCTCC	3 cut(s)	251, 257, 326
Lsp1109I	GCAGC	3 cut(s)	119, 512, 531
LweI	GCATC	1 cut(s)	232
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	3 cut(s)	791, 844, 859
MalI	GATC	3 cut(s)	741, 891, 1027
MbiI	CCGCTC	1 cut(s)	345
MboI	GATC	3 cut(s)	739, 889, 1025
MboII	GAAGA	4 cut(s)	583, 947, 1010, 1013
MflI	RGATCY	1 cut(s)	889
MhlI	GDGCHC	1 cut(s)	625
MluCI	AATT	8 cut(s)	12, 278, 422, 431, 455, 508, 986, 1009
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	4 cut(s)	252, 348, 386, 642
Mph1103I	ATGCAT	1 cut(s)	712
MroXI	GAANNNNTTC	1 cut(s)	988
MseI	TTAA	2 cut(s)	704, 962
MspI	CCGG	2 cut(s)	249, 255
MspR9I	CCNGG	2 cut(s)	267, 439
MvaI	CCWGG	2 cut(s)	267, 439
MwoI	GCNNNNNNNGC	7 cut(s)	107, 200, 245, 251, 467, 499, 531
NdeII	GATC	3 cut(s)	739, 889, 1025
NlaIII	CATG	5 cut(s)	155, 565, 701, 926, 944
NlaIV	GGNNCC	1 cut(s)	253
NmeAIII	GCCGAG	1 cut(s)	724
NmuCI	GTSAC	1 cut(s)	844
NsiI	ATGCAT	1 cut(s)	712
NspI	RCATGY	2 cut(s)	155, 565
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	988
PfeI	GAWTC	4 cut(s)	270, 604, 937, 968
PflMI	CCANNNNNTGG	3 cut(s)	123, 178, 618
PkrI	GCNGC	9 cut(s)	134, 196, 199, 202, 247, 380, 527, 546, 686
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
Psp6I	CCWGG	2 cut(s)	265, 437
PspGI	CCWGG	2 cut(s)	265, 437
PspN4I	GGNNCC	1 cut(s)	253
PstNI	CAGNNNCTG	2 cut(s)	266, 857
PsuI	RGATCY	1 cut(s)	889
RsaI	GTAC	3 cut(s)	560, 695, 812
RsaNI	GTAC	3 cut(s)	559, 694, 811
SaqAI	TTAA	2 cut(s)	704, 962
SatI	GCNGC	9 cut(s)	133, 195, 198, 201, 246, 379, 526, 545, 685
Sau3AI	GATC	3 cut(s)	739, 889, 1025
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	2 cut(s)	267, 439
SduI	GDGCHC	1 cut(s)	625
SetI	ASST	7 cut(s)	160, 188, 323, 472, 489, 820, 872
SfaNI	GCATC	1 cut(s)	232
Sse9I	AATT	8 cut(s)	12, 278, 422, 431, 455, 508, 986, 1009
SsiI	CCGC	9 cut(s)	195, 198, 201, 211, 246, 345, 379, 554, 685
StyD4I	CCNGG	2 cut(s)	265, 437
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	7 cut(s)	21, 225, 233, 401, 737, 859, 880
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	2 cut(s)	235, 1024
TasI	AATT	8 cut(s)	12, 278, 422, 431, 455, 508, 986, 1009
TatI	WGTACW	1 cut(s)	558
TauI	GCSGC	6 cut(s)	197, 200, 203, 248, 381, 687
TfiI	GAWTC	4 cut(s)	270, 604, 937, 968
Tru1I	TTAA	2 cut(s)	704, 962
Tru9I	TTAA	2 cut(s)	704, 962
TscAI	CASTG	5 cut(s)	24, 62, 267, 602, 904
TseFI	GTSAC	1 cut(s)	844
TseI	GCWGC	3 cut(s)	132, 525, 544
Tsp45I	GTSAC	1 cut(s)	844
TspDTI	ATGAA	4 cut(s)	319, 480, 782, 929
TspRI	CASTG	5 cut(s)	24, 62, 267, 602, 904
Van91I	CCANNNNNTGG	3 cut(s)	123, 178, 618
XapI	RAATTY	4 cut(s)	12, 278, 422, 986
XceI	RCATGY	2 cut(s)	155, 565
XmiI	GTMKAC	1 cut(s)	369
XmnI	GAANNNNTTC	1 cut(s)	988
Zsp2I	ATGCAT	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.