Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003677

Physical Location & Seq

Genomic Coordinates Reverse (-)

2190147 .. 2190991

Gene Structure 845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1017800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGGGTGCTGCGAGTCGTCTTTTATACATGCACATCAACACCAGCACCACCACCTGGACACCTTTAGCTCCACTGCCACCACCAACCGTACTCCTCAACCGTCCAACGGTCGAGCCGATGCCGCCAGAGTAGGAGCAGTGCCTGGATTCTCGGAATTCTCGCTGGCTGACTTGAAAGGCGCCACAAATAACTTCAGCTCTGACTTTATCGTCTCCGAGAGCCGTGAGAAAGCCCCCAATGTCGTCTACAAGGGCCGTCTCCAGAACCAAGATAACCGTCCTTGGGGCGTTAGGAAGCCGAGGCACAAAAGGCTTGCCAATTTGATAGGGCATTGTTGCGATGGCGACGAGAGGATGCAGGTGGCGGAGTACATGCCTAATGATACCCTTGCCAAACATCTCTTCCACTGGGAGAATCAAACCATTGAGTGGGGTCTACGACTAAGAGTTGCTCTGAACATTGCTGAAGTATTGGATAACTACAGTAGTGAAGATCGCCCATTGTACCATGATTTAAATGCATGTAGGGTTCTCTCTGATGAGAATGGCGATCCTCGGCCTTCATGTTTTGGATTGATGAACAACAGCAAGGATGGAAAAAGTTACAGCACCAATCTTGCATACACACCTCCTGAATATCTAAGAAATGGAAGGGTGACTCCAGAAACTGTTACACTCAGCTTTGGGACTGTCTTTTTGGATCTGCTCAGTGGAAAACACATCCCTCCCAGTCATGTAAGTATTTACCGTGCCATGCACTTGTTCTCCAATTGGTCGGTTTGGAATGGACCCATAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

267

Amino Acids

29.96

Weight (kDa)

6.92

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	99 - 254	7.6e-11	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	99 - 243	7.7e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35230
fragaria_vesca	FvH4_2g16320 FvH4_2g37600 FvH4_2g37600
malus_domestica	MD05G1131400.v1.1 MD06G1017800.v1.1 MD08G1003600.v1.1 MD10G1134600.v1.1
prunus_persica	Prupe.1G355500_v2.0.a1 Prupe.1G355500_v2.0.a1 Prupe.8G176100_v2.0.a1 Prupe.8G176100_v2.0.a1
pyrus_communis	pycom05g12830 pycom08g00280 pycom10g11610 pycom15g00220
rosa_chinensis	RchiOBHm_Chr6g0280081 RchiOBHm_Chr6g0304131
rosa_laevigata	RLG00000011012 RLG00000013092
rosa_multiflora	Rmu_sc0004617.1_g000013 Rmu_ssc0000218.1_g000005
rosa_roxburghii	Rroxscaffold_7G00164040 Rroxscaffold_7G00188430
rosa_rugosa	Rorug06G0129900 Rorug06G0327900
rosa_samantha	Rh6AG239900 Rh6AG441900 Rh6BG243800 Rh6BG460900 Rh6CG245500 Rh6CG454100 Rh6DG236400
rosa_wichuraiana	Rw6G020920 Rw6G038300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	349
AasI	GACNNNNNNGTC	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	349
AccB1I	GGYRCC	1 cut(s)	179
AccB7I	CCANNNNNTGG	2 cut(s)	55, 429
AccI	GTMKAC	2 cut(s)	246, 436
AciI	CCGC	2 cut(s)	123, 365
AclWI	GGATC	2 cut(s)	545, 708
AcsI	RAATTY	1 cut(s)	155
AcuI	CTGAAG	2 cut(s)	178, 486
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	3 cut(s)	91, 371, 506
AfiI	CCNNNNNNNGG	4 cut(s)	55, 107, 283, 429
AgsI	TTSAA	1 cut(s)	175
AjnI	CCWGG	2 cut(s)	54, 142
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
AluBI	AGCT	3 cut(s)	69, 198, 681
AluI	AGCT	3 cut(s)	69, 198, 681
Alw26I	GTCTC	2 cut(s)	217, 263
AlwI	GGATC	2 cut(s)	545, 708
AlwNI	CAGNNNCTG	2 cut(s)	143, 668
AoxI	GGCC	2 cut(s)	253, 557
ApeKI	GCWGC	1 cut(s)	9
ApoI	RAATTY	1 cut(s)	155
ArsI	GACNNNNNNTTYG	2 cut(s)	679, 711
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	2 cut(s)	253, 788
AsuHPI	GGTGA	1 cut(s)	667
AvaII	GGWCC	1 cut(s)	788
BanI	GGYRCC	1 cut(s)	179
BccI	CCATC	2 cut(s)	335, 587
BceAI	ACGGC	2 cut(s)	207, 240
BciT130I	CCWGG	2 cut(s)	56, 144
BcoDI	GTCTC	2 cut(s)	217, 263
BfmI	CTRYAG	1 cut(s)	481
BfoI	RGCGCY	1 cut(s)	183
BfuAI	ACCTGC	1 cut(s)	349
BisI	GCNGC	2 cut(s)	10, 123
BlsI	GCNGC	2 cut(s)	11, 124
Bme1390I	CCNGG	2 cut(s)	56, 144
Bme18I	GGWCC	1 cut(s)	788
BmgT120I	GGNCC	2 cut(s)	253, 788
BmiI	GGNNCC	2 cut(s)	181, 790
BmrFI	CCNGG	2 cut(s)	56, 144
BmrI	ACTGGG	2 cut(s)	418, 723
BmsI	GCATC	2 cut(s)	109, 345
BmuI	ACTGGG	2 cut(s)	418, 723
BpmI	CTGGAG	2 cut(s)	245, 645
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	3 cut(s)	281, 299, 554
BsaXI	ACNNNNNCTCC	2 cut(s)	749, 779
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 107, 283, 429
Bse1I	ACTGG	2 cut(s)	413, 729
Bse3DI	GCAATG	1 cut(s)	459
BseBI	CCWGG	2 cut(s)	56, 144
BseDI	CCNNGG	3 cut(s)	281, 299, 554
BseGI	GGATG	3 cut(s)	360, 598, 720
BseLI	CCNNNNNNNGG	4 cut(s)	55, 107, 283, 429
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	2 cut(s)	691, 721
BseNI	ACTGG	2 cut(s)	413, 729
BseRI	GAGGAG	1 cut(s)	84
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	255, 559
BshNI	GGYRCC	1 cut(s)	179
BsiEI	CGRYCG	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	700
BslI	CCNNNNNNNGG	4 cut(s)	55, 107, 283, 429
BsmAI	GTCTC	2 cut(s)	217, 263
BsmBI	CGTCTC	2 cut(s)	217, 263
BsmFI	GGGAC	1 cut(s)	700
BsnI	GGCC	2 cut(s)	255, 559
Bsp143I	GATC	3 cut(s)	493, 550, 700
BspACI	CCGC	2 cut(s)	123, 365
BspANI	GGCC	2 cut(s)	255, 559
BspCNI	CTCAG	2 cut(s)	690, 720
BspLI	GGNNCC	2 cut(s)	181, 790
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	2 cut(s)	545, 708
BspT107I	GGYRCC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	459
BsrI	ACTGG	2 cut(s)	413, 729
BssECI	CCNNGG	3 cut(s)	281, 299, 554
BssMI	GATC	3 cut(s)	493, 550, 700
BssNI	GRCGYC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	281
Bst2UI	CCWGG	2 cut(s)	56, 144
Bst4CI	ACNGT	8 cut(s)	89, 102, 110, 278, 485, 670, 691, 749
Bst6I	CTCTTC	1 cut(s)	407
BstACI	GRCGYC	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	165, 315
BstDEI	CTNAG	4 cut(s)	443, 641, 677, 707
BstF5I	GGATG	3 cut(s)	360, 598, 720
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	3 cut(s)	496, 553, 703
BstMAI	GTCTC	2 cut(s)	217, 263
BstMBI	GATC	3 cut(s)	493, 550, 700
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 310
BstNI	CCWGG	2 cut(s)	56, 144
BstNSI	RCATGY	3 cut(s)	32, 376, 525
BstSCI	CCNGG	2 cut(s)	54, 142
BstSFI	CTRYAG	1 cut(s)	481
BstX2I	RGATCY	1 cut(s)	700
BstYI	RGATCY	1 cut(s)	700
BsuRI	GGCC	2 cut(s)	255, 559
BtgZI	GCGATG	1 cut(s)	354
BtsCI	GGATG	3 cut(s)	360, 598, 720
BtsI	GCAGTG	2 cut(s)	72, 144
BtsIMutI	CAGTG	4 cut(s)	72, 144, 406, 715
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	2 cut(s)	165, 315
CaiI	CAGNNNCTG	2 cut(s)	143, 668
CfoI	GCGC	1 cut(s)	182
Cfr13I	GGNCC	2 cut(s)	253, 788
Csp6I	GTAC	3 cut(s)	90, 370, 505
CviAII	CATG	7 cut(s)	29, 373, 509, 522, 564, 734, 754
CviQI	GTAC	3 cut(s)	90, 370, 505
DdeI	CTNAG	4 cut(s)	443, 641, 677, 707
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	3 cut(s)	495, 552, 702
DpnII	GATC	3 cut(s)	493, 550, 700
DraI	TTTAAA	1 cut(s)	516
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
EciI	GGCGGA	1 cut(s)	380
Eco130I	CCWWGG	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	788
Eco57I	CTGAAG	2 cut(s)	178, 486
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	2 cut(s)	54, 142
EcoT14I	CCWWGG	1 cut(s)	281
EcoT22I	ATGCAT	1 cut(s)	523
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	281
Esp3I	CGTCTC	2 cut(s)	217, 263
FaeI	CATG	7 cut(s)	32, 376, 512, 525, 567, 737, 757
FaqI	GGGAC	1 cut(s)	700
FatI	CATG	7 cut(s)	28, 372, 508, 521, 563, 733, 753
FblI	GTMKAC	2 cut(s)	246, 436
Fnu4HI	GCNGC	2 cut(s)	10, 123
FokI	GGATG	3 cut(s)	367, 605, 707
Fsp4HI	GCNGC	2 cut(s)	10, 123
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	2 cut(s)	10, 123
GsuI	CTGGAG	2 cut(s)	245, 645
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	255, 559
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	7 cut(s)	32, 376, 512, 525, 567, 737, 757
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HinfI	GANTC	4 cut(s)	14, 147, 415, 658
HphI	GGTGA	1 cut(s)	667
Hpy166II	GTNNAC	2 cut(s)	247, 437
Hpy188I	TCNGA	5 cut(s)	154, 202, 217, 456, 538
Hpy188III	TCNNGA	3 cut(s)	262, 632, 662
Hpy8I	GTNNAC	2 cut(s)	247, 437
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	2 cut(s)	570, 645
HpyCH4III	ACNGT	8 cut(s)	89, 102, 110, 278, 485, 670, 691, 749
HpyCH4V	TGCA	5 cut(s)	32, 358, 521, 620, 757
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 310
HpyF3I	CTNAG	4 cut(s)	443, 641, 677, 707
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	7 cut(s)	32, 376, 512, 525, 567, 737, 757
HspAI	GCGC	1 cut(s)	180
KasI	GGCGCC	1 cut(s)	179
Kzo9I	GATC	3 cut(s)	493, 550, 700
LmnI	GCTCC	2 cut(s)	74, 134
LweI	GCATC	2 cut(s)	109, 345
MaeIII	GTNAC	3 cut(s)	602, 655, 670
MalI	GATC	3 cut(s)	495, 552, 702
MboI	GATC	3 cut(s)	493, 550, 700
MboII	GAAGA	2 cut(s)	394, 503
MfeI	CAATTG	1 cut(s)	769
MflI	RGATCY	1 cut(s)	700
MluCI	AATT	3 cut(s)	155, 319, 769
Mly113I	GGCGCC	1 cut(s)	180
MlyI	GAGTC	2 cut(s)	23, 652
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	6 cut(s)	105, 294, 345, 564, 639, 735
Mph1103I	ATGCAT	1 cut(s)	523
MseI	TTAA	1 cut(s)	515
MspR9I	CCNGG	2 cut(s)	56, 144
MunI	CAATTG	1 cut(s)	769
MvaI	CCWGG	2 cut(s)	56, 144
MwoI	GCNNNNNNNGC	2 cut(s)	122, 310
NarI	GGCGCC	1 cut(s)	180
NdeII	GATC	3 cut(s)	493, 550, 700
NlaIII	CATG	7 cut(s)	32, 376, 512, 525, 567, 737, 757
NlaIV	GGNNCC	2 cut(s)	181, 790
NmeAIII	GCCGAG	2 cut(s)	324, 535
NmuCI	GTSAC	1 cut(s)	655
NsiI	ATGCAT	1 cut(s)	523
NspI	RCATGY	3 cut(s)	32, 376, 525
PaqCI	CACCTGC	1 cut(s)	349
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	2 cut(s)	147, 415
PflMI	CCANNNNNTGG	2 cut(s)	55, 429
PkrI	GCNGC	2 cut(s)	11, 124
PleI	GAGTC	2 cut(s)	22, 652
PluTI	GGCGCC	1 cut(s)	183
PpsI	GAGTC	2 cut(s)	22, 652
Psp6I	CCWGG	2 cut(s)	54, 142
PspGI	CCWGG	2 cut(s)	54, 142
PspN4I	GGNNCC	2 cut(s)	181, 790
PspPI	GGNCC	2 cut(s)	253, 788
PstNI	CAGNNNCTG	2 cut(s)	143, 668
PsuI	RGATCY	1 cut(s)	700
RsaI	GTAC	3 cut(s)	91, 371, 506
RsaNI	GTAC	3 cut(s)	90, 370, 505
SaqAI	TTAA	1 cut(s)	515
SatI	GCNGC	2 cut(s)	10, 123
Sau3AI	GATC	3 cut(s)	493, 550, 700
Sau96I	GGNCC	2 cut(s)	253, 788
SchI	GAGTC	2 cut(s)	23, 652
ScrFI	CCNGG	2 cut(s)	56, 144
SetI	ASST	7 cut(s)	57, 65, 71, 200, 363, 631, 683
SfaNI	GCATC	2 cut(s)	109, 345
SfcI	CTRYAG	1 cut(s)	481
SfoI	GGCGCC	1 cut(s)	181
SinI	GGWCC	1 cut(s)	788
SmiI	ATTTAAAT	1 cut(s)	516
Sse9I	AATT	3 cut(s)	155, 319, 769
SsiI	CCGC	2 cut(s)	123, 365
SspDI	GGCGCC	1 cut(s)	179
StyD4I	CCNGG	2 cut(s)	54, 142
StyI	CCWWGG	1 cut(s)	281
SwaI	ATTTAAAT	1 cut(s)	516
TaaI	ACNGT	8 cut(s)	89, 102, 110, 278, 485, 670, 691, 749
TaqI	TCGA	1 cut(s)	112
TasI	AATT	3 cut(s)	155, 319, 769
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	2 cut(s)	147, 415
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TscAI	CASTG	4 cut(s)	79, 144, 413, 715
TseFI	GTSAC	1 cut(s)	655
TseI	GCWGC	1 cut(s)	9
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	2 cut(s)	552, 593
TspRI	CASTG	4 cut(s)	79, 144, 413, 715
Van91I	CCANNNNNTGG	2 cut(s)	55, 429
VpaK11BI	GGWCC	1 cut(s)	788
XapI	RAATTY	1 cut(s)	155
XceI	RCATGY	3 cut(s)	32, 376, 525
XmiI	GTMKAC	2 cut(s)	246, 436
Zsp2I	ATGCAT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.