MD05G1131400.v1.1

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
25689229 .. 25693452
4224 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1131400.v1.1.491

Sequence Viewer

Length: 1512 bp
ATGGGTTGCTGTGAATCCAAAGTTTCAGAGAACCAACAACCAGAGAAAATCCAAACCCAGCATCTAGCTCACAATAGCCGGACCCCGACCCACCACACGAATCCCACCTCCGGATCCGACCCGGAAACCGGCGGAGCCCCACCCTTCTCCGAATTCTCCTTCGCCGACCTCAAAGCCGCCACCAACAACTTCAGCTCTGACTACATAGTTTCGGAGAGCGGCGAGAAGGCCCCTAATCTTGTTTACAAGGGCCGGTTGCAGAACCGCCGTTGGATCGCCGTCAAGAAGTTCACCAAGATGGCGTGGCCTGATCCCAAGCAGTTTGCGGAGGAAGCTTGGGGTGTGGGGAAGCTGCGGCATCGGCGGCTTGCGAATTTGATTGGGTATTGCTGTGATGGCGATGAGAGGCTGCTTGTTGCTGAGTACATGCCTACTGATACTTTGGCTAAGCATTTGTTCCACTGGGAGAATCAAACCATTGAGTGGGCCATGCGTTTAAGAGTGGCTCTTTATATTGCTGAAGCTTTAGATTATTGCAGTACCGAGGGCCGCCCGTTATACCACGATTTGAATGCTTATAGGGTTCTCTTTGACGAGGATGGTGATCCTCGTCTTTCATGTTTTGGCTTGATGAGAAATAGTAGGGATGGGAAGAGTTACAGCACAAATCTTGCTTACACGCCACCTGAATATTTAAGAAATGGAAGGGTCACTCCAGAAAGTGTTGTTTATAGCTTTGGCACCGTCCTTCTAGATCTGCTTAGTGGGAAGCACATCCCTCCAAGTCATGCACTTGACATGATACGAGGGAAAAATATCATTCTGTTAATGGATTCACATTTGGAGGGGAAATTTTCTACAGAGGAAGCAACGGTAGTTGTTAATCTTGCCTCTCAATGTCTCCAATATGAACCTAGAGAGCGGCCTAATACAAAGGACCTTGTTGCAACACTCGCTCCACTGCAGACCAAACCTGATGTTCCATCTTATGTCATGCTTGGAATTCCAAAGCATGAAGAAGCGCCTTCAACCCCACAACGTCCCCTTTCTGCTATGGGTGACGCCTGCTCTCGGATGGACCTCACAGCAATCCATCAGATCTTGGTTATGACGCACTACAGAGATGATGAAGGAACCAATGAGTTATCTTTCCAAGAGTGGACTCAACAGATGAGAGACATGTTGGAGGCAAGGAAACGAGGGGATTATGCATTTCGGGACAAAGATTTTAAAGCAGCCATTGAGTGTTACTCCCAGTTCATAGATGTTGGAACTATGGTTTCGCCAACTGTTTTTGCCCGACGCAGTTTATGCTACCTGTTAAATGAGCAACCAGATGCTGCCCTTCGAGATGCAATGCAAGCGCAATGTGTCTATCCTGAGTGGCCCACAGCCTTCTACATGCAGTCAGTTGCTCTAGCCAAGCTGGACATGCACAAGGATGCCGCTGACATGTTGAACGAAGCGACTGCGCTAGAAGAAAAGAAGCAGCGAGGAGGCCGGGGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

504

Amino Acids

56.9

Weight (kDa)

5.88

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 81 - 318 5.1e-26 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 81 - 316 3.8e-23 Protein kinase domain
TPR_BSK1_C PF25575 354 - 470 4e-61 Serine/threonine-protein kinase BSK1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 740
AccB7I CCANNNNNTGG 1 cut(s) 483
AccBSI CCGCTC 2 cut(s) 219, 922
AccIII TCCGGA 1 cut(s) 110
AclWI GGATC 5 cut(s) 108, 121, 281, 305, 599
AcsI RAATTY 4 cut(s) 152, 373, 851, 1002
AcuI CTGAAG 2 cut(s) 175, 540
AcyI GRCGYC 1 cut(s) 1062
AfaI GTAC 2 cut(s) 425, 541
AfiI CCNNNNNNNGG 4 cut(s) 110, 128, 483, 1071
AflIII ACRYGT 2 cut(s) 1179, 1452
AgsI TTSAA 3 cut(s) 571, 1029, 1459
AluBI AGCT 7 cut(s) 68, 195, 335, 352, 524, 735, 1426
AluI AGCT 7 cut(s) 68, 195, 335, 352, 524, 735, 1426
Alw26I GTCTC 2 cut(s) 905, 1170
AlwI GGATC 5 cut(s) 108, 121, 281, 305, 599
AlwNI CAGNNNCTG 1 cut(s) 1340
Aor13HI TCCGGA 1 cut(s) 110
AoxI GGCC 8 cut(s) 228, 250, 305, 486, 547, 923, 1385, 1498
ApeKI GCWGC 5 cut(s) 352, 409, 1235, 1340, 1489
ApoI RAATTY 4 cut(s) 152, 373, 851, 1002
AspLEI GCGC 3 cut(s) 1024, 1366, 1474
AspS9I GGNCC 8 cut(s) 81, 229, 250, 486, 547, 937, 1078, 1386
AsuC2I CCSGG 2 cut(s) 122, 1502
AsuHPI GGTGA 3 cut(s) 283, 614, 1070
AvaII GGWCC 3 cut(s) 81, 937, 1078
BamHI GGATCC 1 cut(s) 113
BanI GGYRCC 1 cut(s) 740
BanII GRGCYC 1 cut(s) 139
BbvI GCAGC 5 cut(s) 339, 396, 1247, 1327, 1501
BccI CCATC 7 cut(s) 292, 389, 593, 641, 991, 1069, 1101
BceAI ACGGC 2 cut(s) 252, 263
BcgI CGANNNNNNTGC 4 cut(s) 554, 588, 1451, 1485
BcnI CCSGG 2 cut(s) 122, 1502
BcoDI GTCTC 2 cut(s) 905, 1170
BfaI CTAG 5 cut(s) 65, 752, 915, 1418, 1475
BfmI CTRYAG 3 cut(s) 858, 962, 1117
BfoI RGCGCY 1 cut(s) 1025
BglII AGATCT 2 cut(s) 754, 1098
BlpI GCTNAGC 1 cut(s) 447
Bme1390I CCNGG 2 cut(s) 122, 1502
Bme18I GGWCC 3 cut(s) 81, 937, 1078
BmgT120I GGNCC 8 cut(s) 81, 229, 250, 486, 547, 937, 1078, 1386
BmiI GGNNCC 6 cut(s) 83, 115, 136, 231, 742, 1135
BmrFI CCNGG 2 cut(s) 122, 1502
BmrI ACTGGG 2 cut(s) 472, 1249
BmsI GCATC 5 cut(s) 70, 367, 1327, 1342, 1432
BmuI ACTGGG 2 cut(s) 472, 1249
BplI GAGNNNNNCTC 2 cut(s) 1235, 1267
BpmI CTGGAG 1 cut(s) 699
Bpu1102I GCTNAGC 1 cut(s) 447
BpuMI CCSGG 2 cut(s) 122, 1502
BsaBI GATNNNNATC 1 cut(s) 603
BsaHI GRCGYC 1 cut(s) 1062
BsaJI CCNNGG 2 cut(s) 543, 1501
BsaWI WCCGGW 1 cut(s) 110
BsaXI ACNNNNNCTCC 2 cut(s) 940, 970
Bsc4I CCNNNNNNNGG 4 cut(s) 110, 128, 483, 1071
Bse118I RCCGGY 2 cut(s) 128, 252
Bse1I ACTGG 2 cut(s) 467, 1255
Bse3DI GCAATG 2 cut(s) 1362, 1373
Bse8I GATNNNNATC 1 cut(s) 603
BseAI TCCGGA 1 cut(s) 110
BseDI CCNNGG 2 cut(s) 543, 1501
BseGI GGATG 5 cut(s) 604, 652, 774, 1080, 1447
BseJI GATNNNNATC 1 cut(s) 603
BseLI CCNNNNNNNGG 4 cut(s) 110, 128, 483, 1071
BseMI GCAATG 2 cut(s) 1362, 1373
BseMII CTCAG 2 cut(s) 411, 1371
BseNI ACTGG 2 cut(s) 467, 1255
BseRI GAGGAG 1 cut(s) 1509
BseXI GCAGC 5 cut(s) 339, 396, 1247, 1327, 1501
BseYI CCCAGC 1 cut(s) 57
BshFI GGCC 8 cut(s) 230, 252, 307, 488, 549, 925, 1387, 1500
BshNI GGYRCC 1 cut(s) 740
BsiSI CCGG 6 cut(s) 79, 111, 122, 129, 253, 1501
BslFI GGGAC 2 cut(s) 1026, 1232
BslI CCNNNNNNNGG 4 cut(s) 110, 128, 483, 1071
BsmAI GTCTC 2 cut(s) 905, 1170
BsmFI GGGAC 2 cut(s) 1026, 1232
BsmI GAATGC 1 cut(s) 577
BsnI GGCC 8 cut(s) 230, 252, 307, 488, 549, 925, 1387, 1500
Bsp1286I GDGCHC 1 cut(s) 139
Bsp13I TCCGGA 1 cut(s) 110
Bsp143I GATC 7 cut(s) 113, 273, 310, 604, 754, 1098, 1505
Bsp1720I GCTNAGC 1 cut(s) 447
BspANI GGCC 8 cut(s) 230, 252, 307, 488, 549, 925, 1387, 1500
BspCNI CTCAG 2 cut(s) 412, 1372
BspEI TCCGGA 1 cut(s) 110
BspHI TCATGA 1 cut(s) 1508
BspLI GGNNCC 6 cut(s) 83, 115, 136, 231, 742, 1135
BspMAI CTGCAG 1 cut(s) 966
BspPI GGATC 5 cut(s) 108, 121, 281, 305, 599
BspT107I GGYRCC 1 cut(s) 740
BsrBI CCGCTC 2 cut(s) 219, 922
BsrDI GCAATG 2 cut(s) 1362, 1373
BsrFI RCCGGY 2 cut(s) 128, 252
BsrI ACTGG 2 cut(s) 467, 1255
BssAI RCCGGY 2 cut(s) 128, 252
BssECI CCNNGG 2 cut(s) 543, 1501
BssMI GATC 7 cut(s) 113, 273, 310, 604, 754, 1098, 1505
BssNI GRCGYC 1 cut(s) 1062
Bst4CI ACNGT 3 cut(s) 745, 874, 1291
Bst6I CTCTTC 1 cut(s) 647
BstACI GRCGYC 1 cut(s) 1062
BstAPI GCANNNNNTGC 1 cut(s) 1311
BstC8I GCNNGC 3 cut(s) 369, 1066, 1362
BstDEI CTNAG 4 cut(s) 420, 447, 761, 1380
BstF5I GGATG 5 cut(s) 604, 652, 774, 1080, 1447
BstH2I RGCGCY 1 cut(s) 1025
BstHHI GCGC 3 cut(s) 1024, 1366, 1474
BstKTI GATC 7 cut(s) 116, 276, 313, 607, 757, 1101, 1508
BstMAI GTCTC 2 cut(s) 905, 1170
BstMBI GATC 7 cut(s) 113, 273, 310, 604, 754, 1098, 1505
BstMWI GCNNNNNNNGC 8 cut(s) 332, 361, 364, 396, 953, 1311, 1361, 1432
BstNSI RCATGY 5 cut(s) 430, 1183, 1405, 1435, 1456
BstSCI CCNGG 2 cut(s) 120, 1500
BstSFI CTRYAG 3 cut(s) 858, 962, 1117
BstV1I GCAGC 5 cut(s) 339, 396, 1247, 1327, 1501
BstX2I RGATCY 3 cut(s) 113, 754, 1098
BstYI RGATCY 3 cut(s) 113, 754, 1098
BsuRI GGCC 8 cut(s) 230, 252, 307, 488, 549, 925, 1387, 1500
BtgZI GCGATG 1 cut(s) 414
BtsCI GGATG 5 cut(s) 604, 652, 774, 1080, 1447
BtsI GCAGTG 1 cut(s) 959
BtsIMutI CAGTG 2 cut(s) 460, 959
Cac8I GCNNGC 3 cut(s) 369, 1066, 1362
CaiI CAGNNNCTG 1 cut(s) 1340
CciI TCATGA 1 cut(s) 1508
CfoI GCGC 3 cut(s) 1024, 1366, 1474
Cfr10I RCCGGY 2 cut(s) 128, 252
Cfr13I GGNCC 8 cut(s) 81, 229, 250, 486, 547, 937, 1078, 1386
CseI GACGC 3 cut(s) 1070, 1120, 1311
Csp6I GTAC 2 cut(s) 424, 540
CviQI GTAC 2 cut(s) 424, 540
DdeI CTNAG 4 cut(s) 420, 447, 761, 1380
DpnI GATC 7 cut(s) 115, 275, 312, 606, 756, 1100, 1507
DpnII GATC 7 cut(s) 113, 273, 310, 604, 754, 1098, 1505
DraI TTTAAA 1 cut(s) 1231
Eam1104I CTCTTC 1 cut(s) 647
EarI CTCTTC 1 cut(s) 647
EciI GGCGGA 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 139
Eco47I GGWCC 3 cut(s) 81, 937, 1078
Eco57I CTGAAG 2 cut(s) 175, 540
EcoO109I RGGNCCY 2 cut(s) 229, 937
EcoRI GAATTC 2 cut(s) 152, 1002
EcoT22I ATGCAT 1 cut(s) 1213
EcoT38I GRGCYC 1 cut(s) 139
FaqI GGGAC 2 cut(s) 1026, 1232
FokI GGATG 5 cut(s) 611, 659, 761, 1087, 1454
FriOI GRGCYC 1 cut(s) 139
FspBI CTAG 5 cut(s) 65, 752, 915, 1418, 1475
GlaI GCGC 3 cut(s) 1023, 1365, 1473
GsaI CCCAGC 1 cut(s) 61
GsuI CTGGAG 1 cut(s) 699
HaeII RGCGCY 1 cut(s) 1025
HaeIII GGCC 8 cut(s) 230, 252, 307, 488, 549, 925, 1387, 1500
HapII CCGG 6 cut(s) 79, 111, 122, 129, 253, 1501
HgaI GACGC 3 cut(s) 1070, 1120, 1311
HhaI GCGC 3 cut(s) 1024, 1366, 1474
Hin1I GRCGYC 1 cut(s) 1062
Hin6I GCGC 3 cut(s) 1022, 1364, 1472
HinP1I GCGC 3 cut(s) 1022, 1364, 1472
HindIII AAGCTT 2 cut(s) 333, 522
HinfI GANTC 5 cut(s) 14, 100, 469, 833, 1162
HpaII CCGG 6 cut(s) 79, 111, 122, 129, 253, 1501
HphI GGTGA 3 cut(s) 283, 614, 1070
Hpy166II GTNNAC 3 cut(s) 244, 291, 1161
Hpy188I TCNGA 7 cut(s) 28, 118, 151, 199, 214, 1074, 1098
Hpy188III TCNNGA 8 cut(s) 111, 283, 716, 752, 1217, 1349, 1379, 1509
Hpy8I GTNNAC 3 cut(s) 244, 291, 1161
Hpy99I CGWCG 1 cut(s) 1305
HpyAV CCTTC 9 cut(s) 154, 169, 220, 699, 758, 1035, 1124, 1355, 1405
HpyCH4III ACNGT 3 cut(s) 745, 874, 1291
HpyCH4IV ACGT 1 cut(s) 1039
HpyF10VI GCNNNNNNNGC 8 cut(s) 332, 361, 364, 396, 953, 1311, 1361, 1432
HpyF3I CTNAG 4 cut(s) 420, 447, 761, 1380
HpySE526I ACGT 1 cut(s) 1039
Hsp92I GRCGYC 1 cut(s) 1062
HspAI GCGC 3 cut(s) 1022, 1364, 1472
Kpn2I TCCGGA 1 cut(s) 110
Kzo9I GATC 7 cut(s) 113, 273, 310, 604, 754, 1098, 1505
LmnI GCTCC 2 cut(s) 134, 961
Lsp1109I GCAGC 5 cut(s) 339, 396, 1247, 1327, 1501
LweI GCATC 5 cut(s) 70, 367, 1327, 1342, 1432
MaeI CTAG 5 cut(s) 65, 752, 915, 1418, 1475
MaeII ACGT 1 cut(s) 1039
MaeIII GTNAC 4 cut(s) 656, 709, 1058, 1247
MalI GATC 7 cut(s) 115, 275, 312, 606, 756, 1100, 1507
MbiI CCGCTC 2 cut(s) 219, 922
MboI GATC 7 cut(s) 113, 273, 310, 604, 754, 1098, 1505
MboII GAAGA 3 cut(s) 664, 1028, 1490
MflI RGATCY 3 cut(s) 113, 754, 1098
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 4 cut(s) 152, 373, 851, 1002
MlyI GAGTC 1 cut(s) 1156
MmeI TCCRAC 4 cut(s) 141, 251, 1164, 1249
Mph1103I ATGCAT 1 cut(s) 1213
MroI TCCGGA 1 cut(s) 110
MseI TTAA 6 cut(s) 497, 695, 827, 882, 1230, 1322
MslI CAYNNNNRTG 2 cut(s) 296, 1440
MspA1I CMGCKG 1 cut(s) 1448
MspI CCGG 6 cut(s) 79, 111, 122, 129, 253, 1501
MspR9I CCNGG 2 cut(s) 122, 1502
Mva1269I GAATGC 1 cut(s) 577
MwoI GCNNNNNNNGC 8 cut(s) 332, 361, 364, 396, 953, 1311, 1361, 1432
NciI CCSGG 2 cut(s) 122, 1502
NdeII GATC 7 cut(s) 113, 273, 310, 604, 754, 1098, 1505
NlaIV GGNNCC 6 cut(s) 83, 115, 136, 231, 742, 1135
NmuCI GTSAC 2 cut(s) 709, 1058
NsiI ATGCAT 1 cut(s) 1213
NspI RCATGY 5 cut(s) 430, 1183, 1405, 1435, 1456
PagI TCATGA 1 cut(s) 1508
PciI ACATGT 2 cut(s) 1179, 1452
PctI GAATGC 1 cut(s) 577
PfeI GAWTC 4 cut(s) 14, 100, 469, 833
PflMI CCANNNNNTGG 1 cut(s) 483
PleI GAGTC 1 cut(s) 1156
PpsI GAGTC 1 cut(s) 1156
PpuMI RGGWCCY 1 cut(s) 937
PscI ACATGT 2 cut(s) 1179, 1452
Psp5II RGGWCCY 1 cut(s) 937
PspFI CCCAGC 1 cut(s) 57
PspN4I GGNNCC 6 cut(s) 83, 115, 136, 231, 742, 1135
PspPI GGNCC 8 cut(s) 81, 229, 250, 486, 547, 937, 1078, 1386
PspPPI RGGWCCY 1 cut(s) 937
PstI CTGCAG 1 cut(s) 966
PstNI CAGNNNCTG 1 cut(s) 1340
PsuI RGATCY 3 cut(s) 113, 754, 1098
RsaI GTAC 2 cut(s) 425, 541
RsaNI GTAC 2 cut(s) 424, 540
RseI CAYNNNNRTG 2 cut(s) 296, 1440
SaqAI TTAA 6 cut(s) 497, 695, 827, 882, 1230, 1322
Sau3AI GATC 7 cut(s) 113, 273, 310, 604, 754, 1098, 1505
Sau96I GGNCC 8 cut(s) 81, 229, 250, 486, 547, 937, 1078, 1386
SchI GAGTC 1 cut(s) 1156
ScrFI CCNGG 2 cut(s) 122, 1502
SduI GDGCHC 1 cut(s) 139
SfaNI GCATC 5 cut(s) 70, 367, 1327, 1342, 1432
SfcI CTRYAG 3 cut(s) 858, 962, 1117
SinI GGWCC 3 cut(s) 81, 937, 1078
SmiMI CAYNNNNRTG 2 cut(s) 296, 1440
Sse9I AATT 4 cut(s) 152, 373, 851, 1002
SspI AATATT 1 cut(s) 692
SspMI CTAG 5 cut(s) 65, 752, 915, 1418, 1475
StyD4I CCNGG 2 cut(s) 120, 1500
TaaI ACNGT 3 cut(s) 745, 874, 1291
TaiI ACGT 1 cut(s) 1042
TaqI TCGA 1 cut(s) 1348
TasI AATT 4 cut(s) 152, 373, 851, 1002
TatI WGTACW 1 cut(s) 423
TauI GCSGC 7 cut(s) 179, 222, 358, 367, 552, 925, 1448
TfiI GAWTC 4 cut(s) 14, 100, 469, 833
Tru1I TTAA 6 cut(s) 497, 695, 827, 882, 1230, 1322
Tru9I TTAA 6 cut(s) 497, 695, 827, 882, 1230, 1322
TscAI CASTG 2 cut(s) 467, 966
TseFI GTSAC 2 cut(s) 709, 1058
TseI GCWGC 5 cut(s) 352, 409, 1235, 1340, 1489
Tsp45I GTSAC 2 cut(s) 709, 1058
TspDTI ATGAA 5 cut(s) 606, 924, 1029, 1143, 1249
TspRI CASTG 2 cut(s) 467, 966
Van91I CCANNNNNTGG 1 cut(s) 483
VpaK11BI GGWCC 3 cut(s) 81, 937, 1078
XapI RAATTY 4 cut(s) 152, 373, 851, 1002
XbaI TCTAGA 1 cut(s) 751
XceI RCATGY 5 cut(s) 430, 1183, 1405, 1435, 1456
XspI CTAG 5 cut(s) 65, 752, 915, 1418, 1475
Zsp2I ATGCAT 1 cut(s) 1213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.