Rroxscaffold_7G00188430

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
28010385 .. 28014981
4597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188430.1

Sequence Viewer

Length: 1518 bp
ATGGGTTGCTGTGATTCCAAGTTCCTTACTGCCGAGACTCACCCAGAGAAAGTCTCGACCAACCAACAAGCCCACAACACCGCCCTGGCCCAGACCCACCACCCGACTGTCCCCGCCGGATCCGACCCCGAAACCGGCGGCGCCCCGCCCTTCTCGGAATTCTCCTTCTCCGACCTCAAAACCGCCACCAACAACTTCAGCTCCGACTACATAGTATCCGAGAGTGGCGAGAAAGCCCCCAACGTTGTCTACAAGGGCCGCCTCAACAACCGCCGTTGGATCGCCGTCAAGAAGTTCACCAAGCTGGCGTGGCCCGATCCCAAGCAGTTTGCGGAGGAAGCTTGGGGTGTGGGGAAGCTGAGGCATAGGAGGCTTGCAAATCTAATTGGGTATTGCTGTGATGGTGATGAGAGGCTGCTTGTTGCTGAGTACATGCCTACTGATACTTTAGCCAAGCATTTGTTTCACTGGGAGAATCAAACCATTGAATGGGCCATGCGTTTAAGAGTTGCTCTTCATATTGCTGAAGCTTTAGATTATTGTAGTACTGAGGGCCGTCCATTATACCATGATTTGAATGCGTATAGGGTTCTCTTTGATGAGGATGGTGATCCACGTCTTTCATGTTTTGGCTTGATGAGAAATAGTAGGGATGGGAAGAGTTATAGCACAAATCTGGCCTATACACCCCCAGAGTACTTAAGAAATGGAAGGGTCACTCCAGAAAGCGTTATCTACAGTTTTGGTACTGTCCTTCTAGACTTGCTAAGTGGAAAGCACATCCCTCCAAGTCATGCTCTTGATATGATACGGGGTAAGAATATCATTCTCTTGATGGATTCACATTTGGAGGGAAATTTTTCTACTGAGGAAGCGACACTGGTTGTCAATCTTGCCTCTCAATGTTTGCAGTATGAGCCCAGAGAGCGGCCTAATAGAAAGGAACTTGTTGTGACACTTGCTCCACTGCAGACCAAACCTGATGTTCCATCTTATGTCATGCTTGGAATTCCGAAGCATGAGGAAGCCCCACCAACCCCACAACGGCCCCTTTCAGCAATGGGTGAGGCTTGCTCTCGAATGGACCTCACAGCGATCCATCAGATCTTGGTTATGACGCACTACAGAGATGACGAAGGAACCAATGAGTTATCCTTCCAAGAGTGGACTCAACAGATGAGAGACATGTTGGAAGCAAGGAAACGAGGGGACTATGCGTTTCGTGACAAAGATTTTAAAGCTGCCATTGACTGCTACTCCCAGTTCATAGATGTTGGAACTATGGTGTCCCCCACTGTTTTTGCACGACGCAGTTTATGCTATCTGTTAAACGAGCAACCAGATGCTGCCCTTCGAGATGCAATGCAAGCTCAATGTGTCTATCCAGAGTGGCCGACGGCCTTCTACATGCAATCAGTTGCTCTTGCCAAGCTGGACATGCACAAGGACGCTGGTGACATGTTAAATGAAGCAACTACACTGGAAGAAAAGAGGCAAAGAGGTGGCAGGGGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

505

Amino Acids

57.08

Weight (kDa)

5.85

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 82 - 319 1.7e-25 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 82 - 317 3.8e-23 Protein kinase domain
TPR_BSK1_C PF25575 356 - 472 3.1e-61 Serine/threonine-protein kinase BSK1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 140
AccB7I CCANNNNNTGG 1 cut(s) 489
AccBSI CCGCTC 1 cut(s) 928
AccI GTMKAC 1 cut(s) 249
AciI CCGC 9 cut(s) 81, 114, 138, 146, 183, 259, 271, 332, 928
AclI AACGTT 1 cut(s) 243
AclWI GGATC 6 cut(s) 114, 127, 287, 311, 605, 1090
AcoI YGGCCR 1 cut(s) 1391
AcsI RAATTY 3 cut(s) 158, 856, 1008
AcuI CTGAAG 2 cut(s) 181, 546
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 4 cut(s) 431, 547, 698, 748
AfiI CCNNNNNNNGG 4 cut(s) 134, 489, 927, 1044
AflII CTTAAG 1 cut(s) 700
AflIII ACRYGT 2 cut(s) 1185, 1458
AgsI TTSAA 2 cut(s) 488, 577
AjiI CACGTC 1 cut(s) 617
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 8 cut(s) 201, 304, 341, 358, 530, 1241, 1370, 1432
AluI AGCT 8 cut(s) 201, 304, 341, 358, 530, 1241, 1370, 1432
Alw26I GTCTC 3 cut(s) 29, 58, 1176
AlwI GGATC 6 cut(s) 114, 127, 287, 311, 605, 1090
AlwNI CAGNNNCTG 1 cut(s) 1346
ApeKI GCWGC 3 cut(s) 415, 1241, 1346
ApoI RAATTY 3 cut(s) 158, 856, 1008
Asp700I GAANNNNTTC 1 cut(s) 859
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 7 cut(s) 88, 256, 312, 492, 553, 1047, 1084
AsuHPI GGTGA 6 cut(s) 32, 289, 416, 620, 1076, 1466
AvaII GGWCC 1 cut(s) 1084
BamHI GGATCC 1 cut(s) 119
BanI GGYRCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 921
BbvCI CCTCAGC 1 cut(s) 359
BbvI GCAGC 3 cut(s) 402, 1228, 1333
BccI CCATC 6 cut(s) 395, 599, 647, 829, 997, 1107
BceAI ACGGC 5 cut(s) 258, 269, 540, 1061, 1413
BciT130I CCWGG 1 cut(s) 86
BciVI GTATCC 1 cut(s) 226
BcoDI GTCTC 3 cut(s) 29, 58, 1176
BfaI CTAG 1 cut(s) 758
BfmI CTRYAG 3 cut(s) 736, 968, 1123
BfoI RGCGCY 1 cut(s) 144
BfrI CTTAAG 1 cut(s) 700
BfuI GTATCC 1 cut(s) 226
BglII AGATCT 1 cut(s) 1104
BisI GCNGC 6 cut(s) 139, 259, 416, 929, 1242, 1347
BlsI GCNGC 6 cut(s) 140, 260, 417, 930, 1243, 1348
BmcAI AGTACT 2 cut(s) 547, 698
Bme1390I CCNGG 1 cut(s) 86
Bme18I GGWCC 1 cut(s) 1084
BmgBI CACGTC 1 cut(s) 617
BmgT120I GGNCC 7 cut(s) 88, 256, 312, 492, 553, 1047, 1084
BmiI GGNNCC 4 cut(s) 121, 142, 1049, 1141
BmrFI CCNGG 1 cut(s) 86
BmrI ACTGGG 2 cut(s) 478, 1255
BmsI GCATC 2 cut(s) 1333, 1348
BmuI ACTGGG 2 cut(s) 478, 1255
BplI GAGNNNNNCTC 4 cut(s) 38, 70, 1058, 1090
BpmI CTGGAG 1 cut(s) 705
Bpu10I CCTNAGC 1 cut(s) 359
BsaBI GATNNNNATC 1 cut(s) 609
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 84
BsaXI ACNNNNNCTCC 6 cut(s) 185, 215, 946, 976, 1241, 1271
Bsc4I CCNNNNNNNGG 4 cut(s) 134, 489, 927, 1044
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 4 cut(s) 473, 885, 1261, 1485
Bse3DI GCAATG 2 cut(s) 1065, 1368
Bse8I GATNNNNATC 1 cut(s) 609
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 3 cut(s) 610, 658, 780
BseJI GATNNNNATC 1 cut(s) 609
BseLI CCNNNNNNNGG 4 cut(s) 134, 489, 927, 1044
BseMI GCAATG 2 cut(s) 1065, 1368
BseMII CTCAG 4 cut(s) 350, 417, 540, 858
BseNI ACTGG 4 cut(s) 473, 885, 1261, 1485
BseXI GCAGC 3 cut(s) 402, 1228, 1333
BshNI GGYRCC 1 cut(s) 140
BsiSI CCGG 2 cut(s) 117, 135
BslFI GGGAC 3 cut(s) 95, 1223, 1273
BslI CCNNNNNNNGG 4 cut(s) 134, 489, 927, 1044
BsmAI GTCTC 3 cut(s) 29, 58, 1176
BsmFI GGGAC 3 cut(s) 95, 1223, 1273
BsmI GAATGC 1 cut(s) 583
Bsp1286I GDGCHC 1 cut(s) 921
Bsp143I GATC 7 cut(s) 119, 279, 316, 610, 1095, 1104, 1511
BspACI CCGC 9 cut(s) 81, 114, 138, 146, 183, 259, 271, 332, 928
BspCNI CTCAG 4 cut(s) 351, 418, 541, 859
BspHI TCATGA 1 cut(s) 1514
BspLI GGNNCC 4 cut(s) 121, 142, 1049, 1141
BspMAI CTGCAG 1 cut(s) 972
BspPI GGATC 6 cut(s) 114, 127, 287, 311, 605, 1090
BspQI GCTCTTC 1 cut(s) 519
BspT107I GGYRCC 1 cut(s) 140
BspTI CTTAAG 1 cut(s) 700
BsrBI CCGCTC 1 cut(s) 928
BsrDI GCAATG 2 cut(s) 1065, 1368
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 4 cut(s) 473, 885, 1261, 1485
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 7 cut(s) 119, 279, 316, 610, 1095, 1104, 1511
BssNI GRCGYC 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 4 cut(s) 109, 740, 751, 1297
Bst6I CTCTTC 2 cut(s) 519, 653
BstACI GRCGYC 1 cut(s) 141
BstAFI CTTAAG 1 cut(s) 700
BstAPI GCANNNNNTGC 1 cut(s) 1317
BstC8I GCNNGC 4 cut(s) 306, 375, 1072, 1368
BstDEI CTNAG 5 cut(s) 359, 426, 549, 767, 867
BstF5I GGATG 3 cut(s) 610, 658, 780
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 7 cut(s) 122, 282, 319, 613, 1098, 1107, 1514
BstMAI GTCTC 3 cut(s) 29, 58, 1176
BstMBI GATC 7 cut(s) 119, 279, 316, 610, 1095, 1104, 1511
BstMWI GCNNNNNNNGC 8 cut(s) 310, 338, 370, 916, 925, 1317, 1367, 1438
BstNI CCWGG 1 cut(s) 86
BstNSI RCATGY 5 cut(s) 436, 1189, 1411, 1441, 1462
BstSCI CCNGG 1 cut(s) 84
BstSFI CTRYAG 3 cut(s) 736, 968, 1123
BstV1I GCAGC 3 cut(s) 402, 1228, 1333
BstX2I RGATCY 2 cut(s) 119, 1104
BstYI RGATCY 2 cut(s) 119, 1104
BsuI GTATCC 1 cut(s) 226
BtrI CACGTC 1 cut(s) 617
BtsCI GGATG 3 cut(s) 610, 658, 780
BtsI GCAGTG 1 cut(s) 965
BtsIMutI CAGTG 5 cut(s) 466, 878, 965, 1293, 1478
Cac8I GCNNGC 4 cut(s) 306, 375, 1072, 1368
CaiI CAGNNNCTG 1 cut(s) 1346
CciI TCATGA 1 cut(s) 1514
CfoI GCGC 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 7 cut(s) 88, 256, 312, 492, 553, 1047, 1084
CseI GACGC 3 cut(s) 1126, 1317, 1457
Csp6I GTAC 4 cut(s) 430, 546, 697, 747
CspCI CAANNNNNGTGG 2 cut(s) 1282, 1317
CviQI GTAC 4 cut(s) 430, 546, 697, 747
DdeI CTNAG 5 cut(s) 359, 426, 549, 767, 867
DinI GGCGCC 1 cut(s) 142
DpnI GATC 7 cut(s) 121, 281, 318, 612, 1097, 1106, 1513
DpnII GATC 7 cut(s) 119, 279, 316, 610, 1095, 1104, 1511
DraI TTTAAA 1 cut(s) 1237
EaeI YGGCCR 1 cut(s) 1391
Eam1104I CTCTTC 2 cut(s) 519, 653
EarI CTCTTC 2 cut(s) 519, 653
Eco24I GRGCYC 1 cut(s) 921
Eco47I GGWCC 1 cut(s) 1084
Eco57I CTGAAG 2 cut(s) 181, 546
EcoRI GAATTC 2 cut(s) 158, 1008
EcoRII CCWGG 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 921
EgeI GGCGCC 1 cut(s) 142
EheI GGCGCC 1 cut(s) 142
FaqI GGGAC 3 cut(s) 95, 1223, 1273
FauI CCCGC 2 cut(s) 121, 153
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 6 cut(s) 139, 259, 416, 929, 1242, 1347
FokI GGATG 3 cut(s) 617, 665, 767
FriOI GRGCYC 1 cut(s) 921
Fsp4HI GCNGC 6 cut(s) 139, 259, 416, 929, 1242, 1347
FspBI CTAG 1 cut(s) 758
GlaI GCGC 1 cut(s) 142
GluI GCNGC 6 cut(s) 139, 259, 416, 929, 1242, 1347
GsuI CTGGAG 1 cut(s) 705
HaeII RGCGCY 1 cut(s) 144
HapII CCGG 2 cut(s) 117, 135
HgaI GACGC 3 cut(s) 1126, 1317, 1457
HhaI GCGC 1 cut(s) 143
Hin1I GRCGYC 1 cut(s) 141
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HindIII AAGCTT 2 cut(s) 339, 528
HinfI GANTC 5 cut(s) 14, 37, 475, 839, 1168
HpaII CCGG 2 cut(s) 117, 135
HphI GGTGA 6 cut(s) 32, 289, 416, 620, 1076, 1466
Hpy166II GTNNAC 3 cut(s) 250, 297, 1167
Hpy188I TCNGA 7 cut(s) 124, 157, 172, 205, 220, 1014, 1104
Hpy8I GTNNAC 3 cut(s) 250, 297, 1167
Hpy99I CGWCG 2 cut(s) 1311, 1399
HpyAV CCTTC 8 cut(s) 160, 175, 705, 764, 1130, 1165, 1361, 1411
HpyCH4III ACNGT 4 cut(s) 109, 740, 751, 1297
HpyCH4IV ACGT 2 cut(s) 243, 616
HpyCH4V TGCA 8 cut(s) 377, 910, 970, 1304, 1361, 1366, 1411, 1441
HpyF10VI GCNNNNNNNGC 8 cut(s) 310, 338, 370, 916, 925, 1317, 1367, 1438
HpyF3I CTNAG 5 cut(s) 359, 426, 549, 767, 867
HpySE526I ACGT 2 cut(s) 243, 616
Hsp92I GRCGYC 1 cut(s) 141
HspAI GCGC 1 cut(s) 141
KasI GGCGCC 1 cut(s) 140
Kzo9I GATC 7 cut(s) 119, 279, 316, 610, 1095, 1104, 1511
LguI GCTCTTC 1 cut(s) 519
LmnI GCTCC 2 cut(s) 206, 967
Lsp1109I GCAGC 3 cut(s) 402, 1228, 1333
LweI GCATC 2 cut(s) 1333, 1348
MaeI CTAG 1 cut(s) 758
MaeII ACGT 2 cut(s) 243, 616
MaeIII GTNAC 4 cut(s) 715, 952, 1223, 1454
MalI GATC 7 cut(s) 121, 281, 318, 612, 1097, 1106, 1513
MbiI CCGCTC 1 cut(s) 928
MboI GATC 7 cut(s) 119, 279, 316, 610, 1095, 1104, 1511
MboII GAAGA 3 cut(s) 506, 670, 1496
MflI RGATCY 2 cut(s) 119, 1104
MhlI GDGCHC 1 cut(s) 921
MluCI AATT 4 cut(s) 158, 384, 856, 1008
Mly113I GGCGCC 1 cut(s) 141
MlyI GAGTC 2 cut(s) 31, 1162
MmeI TCCRAC 6 cut(s) 147, 195, 228, 257, 1170, 1255
MroXI GAANNNNTTC 1 cut(s) 859
MseI TTAA 5 cut(s) 503, 701, 1236, 1328, 1463
MspCI CTTAAG 1 cut(s) 700
MspI CCGG 2 cut(s) 117, 135
MspR9I CCNGG 1 cut(s) 86
Mva1269I GAATGC 1 cut(s) 583
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 8 cut(s) 310, 338, 370, 916, 925, 1317, 1367, 1438
NarI GGCGCC 1 cut(s) 141
NdeII GATC 7 cut(s) 119, 279, 316, 610, 1095, 1104, 1511
NlaIV GGNNCC 4 cut(s) 121, 142, 1049, 1141
NmeAIII GCCGAG 1 cut(s) 58
NmuCI GTSAC 4 cut(s) 715, 952, 1223, 1454
NspI RCATGY 5 cut(s) 436, 1189, 1411, 1441, 1462
PagI TCATGA 1 cut(s) 1514
PciI ACATGT 2 cut(s) 1185, 1458
PciSI GCTCTTC 1 cut(s) 519
PctI GAATGC 1 cut(s) 583
PdmI GAANNNNTTC 1 cut(s) 859
PfeI GAWTC 3 cut(s) 14, 475, 839
PflMI CCANNNNNTGG 1 cut(s) 489
PkrI GCNGC 6 cut(s) 140, 260, 417, 930, 1243, 1348
PleI GAGTC 2 cut(s) 31, 1162
PluTI GGCGCC 1 cut(s) 144
PpsI GAGTC 2 cut(s) 31, 1162
PscI ACATGT 2 cut(s) 1185, 1458
Psp1406I AACGTT 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 4 cut(s) 121, 142, 1049, 1141
PspPI GGNCC 7 cut(s) 88, 256, 312, 492, 553, 1047, 1084
PstI CTGCAG 1 cut(s) 972
PstNI CAGNNNCTG 1 cut(s) 1346
PsuI RGATCY 2 cut(s) 119, 1104
RsaI GTAC 4 cut(s) 431, 547, 698, 748
RsaNI GTAC 4 cut(s) 430, 546, 697, 747
SapI GCTCTTC 1 cut(s) 519
SaqAI TTAA 5 cut(s) 503, 701, 1236, 1328, 1463
SatI GCNGC 6 cut(s) 139, 259, 416, 929, 1242, 1347
Sau3AI GATC 7 cut(s) 119, 279, 316, 610, 1095, 1104, 1511
Sau96I GGNCC 7 cut(s) 88, 256, 312, 492, 553, 1047, 1084
ScaI AGTACT 2 cut(s) 547, 698
SchI GAGTC 2 cut(s) 31, 1162
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 1 cut(s) 921
SfaNI GCATC 2 cut(s) 1333, 1348
SfcI CTRYAG 3 cut(s) 736, 968, 1123
SfoI GGCGCC 1 cut(s) 142
SinI GGWCC 1 cut(s) 1084
SmlI CTYRAG 1 cut(s) 700
SmoI CTYRAG 1 cut(s) 700
Sse9I AATT 4 cut(s) 158, 384, 856, 1008
SsiI CCGC 9 cut(s) 81, 114, 138, 146, 183, 259, 271, 332, 928
SspDI GGCGCC 1 cut(s) 140
SspMI CTAG 1 cut(s) 758
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 4 cut(s) 109, 740, 751, 1297
TaiI ACGT 2 cut(s) 246, 619
TaqI TCGA 3 cut(s) 56, 1078, 1354
TasI AATT 4 cut(s) 158, 384, 856, 1008
TatI WGTACW 3 cut(s) 429, 545, 696
TauI GCSGC 3 cut(s) 141, 261, 931
TfiI GAWTC 3 cut(s) 14, 475, 839
Tru1I TTAA 5 cut(s) 503, 701, 1236, 1328, 1463
Tru9I TTAA 5 cut(s) 503, 701, 1236, 1328, 1463
TscAI CASTG 5 cut(s) 473, 885, 972, 1300, 1485
TseFI GTSAC 4 cut(s) 715, 952, 1223, 1454
TseI GCWGC 3 cut(s) 415, 1241, 1346
Tsp45I GTSAC 4 cut(s) 715, 952, 1223, 1454
TspDTI ATGAA 4 cut(s) 506, 612, 1255, 1482
TspRI CASTG 5 cut(s) 473, 885, 972, 1300, 1485
Van91I CCANNNNNTGG 1 cut(s) 489
Vha464I CTTAAG 1 cut(s) 700
VpaK11BI GGWCC 1 cut(s) 1084
XapI RAATTY 3 cut(s) 158, 856, 1008
XbaI TCTAGA 1 cut(s) 757
XceI RCATGY 5 cut(s) 436, 1189, 1411, 1441, 1462
XmiI GTMKAC 1 cut(s) 249
XmnI GAANNNNTTC 1 cut(s) 859
XspI CTAG 1 cut(s) 758
ZrmI AGTACT 2 cut(s) 547, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.