FvH4_2g17610

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007087
Physical Location & Seq
Reverse (-)
15141196 .. 15144568
3373 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17610.t3

Sequence Viewer

Length: 1233 bp
ATGCCTACTTGTGTTGACCCAGTTGGTATTGCAAAGTTTCCATTGGAGGGTCACCGATGGGTGCATTCTGCTCCGGAGCAGAAACCTGTGGCGCCATTGGAGCATTCCGGGGAAGGTAAAGTCGATGATGGCGGTGGTAATGGCAATGGTAAAGTGAAGAGGAAGAAGCTCAAGGGGAAACGAGCTGTGGTGAGGTGGCTCAAGTTCTTTAGGTACAAGAAGAAGAAAGATTTCGAGAGAATGACCCAGGAAGAAAAGATACTATTCAAATTGAGAAAGGCTCAAAAGAAAGAGGAAAGGCTTTTGGAAGCTCTTAGGAAGATCGAGCCTAGGGAGTCGGCAGAAACAGCGCATGATCCGGAGATATTGACACCGGAGGAGCATTTCTTCTTCTTGAAGATGGGGCTTAAGTGCAAGAATTATGTGCCTGTAGGAAGGCGGGGGATATACCAGGGTGTGATTCTGAACATGCACTTGCATTGGAAGAAACATCAGACGCTGCAGGTGATAGTGAGGACATTCTCACCTGAGGAGGTTAAGGATATTGCTTCAGAGCTGGCGAGGCTAACAGGAGGGATTGTGCTTGGAATTCATGAGGAATACACGATTATTATGTATAGAGGGAAGAACTATTCTCAGCCGCCGACAGAGATCATGTCACCTAGGATCACTCTCTCGAGGAAGAAGGCTTTGGATAAATCGAAGTATATGGATGGCCTTCGAGCAGTAAGGAAGCACATTCCAAAGCTCGAACAGGACCTTGAGTTGCTTAGAGCACAAGCCAAAAGAAAAGTTGAATTCAGTTCTGATGCAATTGAAGAAACTCCAGAAGGCATTCAGAGTGTAGAGTCTGGGAGCTCCTCAAACATCAATCTCGAGCCTTCAGATAAGCTCAAAGAAATTTTGGATAGAGCAAAGGAGATCCCTGAGGATGACCCTGTAACAGATGAAGATATGGCTTCAGACTCAGAAGATTTATCAGATATTTTTGAGACCGATTCTGAAAAGGAGAGTGAGAACAAAGTGCAACGACCTCTGTATTTGGAAGAATTTGAGAAGTTCCTAGTTGAAAGTGATGGAGAGCCTGATGATTTTGAGGATCACCTGCGTCAAATATCCATGGACTCAAAGAAGGCTAAATCACCGAACGAAAATGCTGGCTTGCCAAACTTTGATGAGGTCGATAGAATATTTCTGCGTGCTGCTTCACTTTTAAAAAAGAAAAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CRS1_YhbY EF-hand_1 EF-hand_5

Protein Analysis

411

Amino Acids

47.17

Weight (kDa)

7.72

Isoelectric Point (pI)

56.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 162 - 246 1.4e-14 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 493, 1113
Acc36I ACCTGC 2 cut(s) 493, 1113
AccB1I GGYRCC 1 cut(s) 91
AccIII TCCGGA 2 cut(s) 73, 358
AciI CCGC 3 cut(s) 132, 439, 641
AclWI GGATC 4 cut(s) 350, 674, 916, 1107
AcsI RAATTY 4 cut(s) 588, 797, 900, 1049
AcuI CTGAAG 3 cut(s) 534, 867, 945
AcyI GRCGYC 1 cut(s) 92
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 47
AflII CTTAAG 1 cut(s) 407
AgsI TTSAA 5 cut(s) 268, 397, 797, 818, 1070
AjnI CCWGG 2 cut(s) 246, 450
AjuI GAANNNNNNNTTGG 2 cut(s) 674, 706
AluBI AGCT 7 cut(s) 169, 185, 311, 556, 748, 858, 892
AluI AGCT 7 cut(s) 169, 185, 311, 556, 748, 858, 892
Alw21I GWGCWC 2 cut(s) 778, 860
Alw26I GTCTC 1 cut(s) 986
AlwI GGATC 4 cut(s) 350, 674, 916, 1107
AlwNI CAGNNNCTG 1 cut(s) 499
Ama87I CYCGRG 2 cut(s) 676, 875
Aor13HI TCCGGA 2 cut(s) 73, 358
AoxI GGCC 1 cut(s) 715
ApeKI GCWGC 2 cut(s) 499, 1202
ApoI RAATTY 4 cut(s) 588, 797, 900, 1049
Asp700I GAANNNNTTC 2 cut(s) 230, 834
AspA2I CCTAGG 2 cut(s) 329, 662
AspLEI GCGC 2 cut(s) 94, 352
AspS9I GGNCC 1 cut(s) 757
AsuC2I CCSGG 1 cut(s) 109
AsuHPI GGTGA 7 cut(s) 44, 202, 516, 517, 651, 1094, 1134
AvaI CYCGRG 2 cut(s) 676, 875
AvaII GGWCC 1 cut(s) 757
AvrII CCTAGG 2 cut(s) 329, 662
AxyI CCTNAGG 2 cut(s) 528, 927
BanI GGYRCC 1 cut(s) 91
BanII GRGCYC 1 cut(s) 860
BarI GAAGNNNNNNTAC 2 cut(s) 243, 275
Bbv12I GWGCWC 2 cut(s) 778, 860
BbvI GCAGC 2 cut(s) 486, 1189
BccI CCATC 5 cut(s) 51, 122, 394, 707, 1070
BciT130I CCWGG 2 cut(s) 248, 452
BcnI CCSGG 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 986
BfaI CTAG 3 cut(s) 330, 663, 1064
BfmI CTRYAG 2 cut(s) 429, 500
BfoI RGCGCY 1 cut(s) 95
BfrI CTTAAG 1 cut(s) 407
BfuAI ACCTGC 2 cut(s) 493, 1113
BisI GCNGC 3 cut(s) 500, 641, 1203
BlnI CCTAGG 2 cut(s) 329, 662
BlsI GCNGC 3 cut(s) 501, 642, 1204
Bme1390I CCNGG 3 cut(s) 109, 248, 452
Bme18I GGWCC 1 cut(s) 757
BmeT110I CYCGRG 2 cut(s) 676, 875
BmgT120I GGNCC 1 cut(s) 757
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 3 cut(s) 109, 248, 452
BmrI ACTGGG 1 cut(s) 14
BmsI GCATC 1 cut(s) 799
BmuI ACTGGG 1 cut(s) 14
BplI GAGNNNNNCTC 2 cut(s) 265, 297
BpmI CTGGAG 1 cut(s) 810
BpuEI CTTGAG 3 cut(s) 155, 185, 782
BpuMI CCSGG 1 cut(s) 109
BsaHI GRCGYC 1 cut(s) 92
BsaI GGTCTC 1 cut(s) 986
BsaJI CCNNGG 6 cut(s) 108, 246, 329, 451, 662, 1119
BsaWI WCCGGW 3 cut(s) 73, 358, 373
BsaXI ACNNNNNCTCC 2 cut(s) 564, 594
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 20
Bse21I CCTNAGG 2 cut(s) 528, 927
Bse3DI GCAATG 1 cut(s) 151
BseAI TCCGGA 2 cut(s) 73, 358
BseBI CCWGG 2 cut(s) 248, 452
BseDI CCNNGG 6 cut(s) 108, 246, 329, 451, 662, 1119
BseGI GGATG 2 cut(s) 718, 937
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 4 cut(s) 519, 650, 918, 981
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 3 cut(s) 392, 545, 850
BseXI GCAGC 2 cut(s) 486, 1189
BshFI GGCC 1 cut(s) 717
BshNI GGYRCC 1 cut(s) 91
BsiHKAI GWGCWC 2 cut(s) 778, 860
BsiHKCI CYCGRG 2 cut(s) 676, 875
BsiSI CCGG 4 cut(s) 74, 108, 359, 374
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 986
BsmI GAATGC 3 cut(s) 64, 103, 834
BsnI GGCC 1 cut(s) 717
Bso31I GGTCTC 1 cut(s) 986
BsoBI CYCGRG 2 cut(s) 676, 875
Bsp1286I GDGCHC 2 cut(s) 778, 860
Bsp13I TCCGGA 2 cut(s) 73, 358
Bsp143I GATC 6 cut(s) 321, 355, 651, 666, 921, 1099
Bsp19I CCATGG 1 cut(s) 1119
BspACI CCGC 3 cut(s) 132, 439, 641
BspANI GGCC 1 cut(s) 717
BspCNI CTCAG 4 cut(s) 520, 649, 919, 980
BspEI TCCGGA 2 cut(s) 73, 358
BspHI TCATGA 1 cut(s) 592
BspLI GGNNCC 1 cut(s) 93
BspMAI CTGCAG 1 cut(s) 504
BspMI ACCTGC 2 cut(s) 493, 1113
BspPI GGATC 4 cut(s) 350, 674, 916, 1107
BspT107I GGYRCC 1 cut(s) 91
BspTI CTTAAG 1 cut(s) 407
BspTNI GGTCTC 1 cut(s) 986
BsrDI GCAATG 1 cut(s) 151
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 6 cut(s) 108, 246, 329, 451, 662, 1119
BssMI GATC 6 cut(s) 321, 355, 651, 666, 921, 1099
BssNI GRCGYC 1 cut(s) 92
BssT1I CCWWGG 3 cut(s) 329, 662, 1119
Bst2UI CCWGG 2 cut(s) 248, 452
Bst6I CTCTTC 1 cut(s) 152
BstACI GRCGYC 1 cut(s) 92
BstAFI CTTAAG 1 cut(s) 407
BstC8I GCNNGC 4 cut(s) 558, 1159, 1163, 1200
BstDEI CTNAG 6 cut(s) 314, 528, 636, 770, 927, 967
BstDSI CCRYGG 1 cut(s) 1119
BstEII GGTNACC 1 cut(s) 50
BstF5I GGATG 2 cut(s) 718, 937
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 2 cut(s) 94, 352
BstKTI GATC 6 cut(s) 324, 358, 654, 669, 924, 1102
BstMAI GTCTC 1 cut(s) 986
BstMBI GATC 6 cut(s) 321, 355, 651, 666, 921, 1099
BstMWI GCNNNNNNNGC 3 cut(s) 100, 347, 562
BstNI CCWGG 2 cut(s) 248, 452
BstNSI RCATGY 1 cut(s) 472
BstPI GGTNACC 1 cut(s) 50
BstSCI CCNGG 3 cut(s) 107, 246, 450
BstSFI CTRYAG 2 cut(s) 429, 500
BstV1I GCAGC 2 cut(s) 486, 1189
BstX2I RGATCY 1 cut(s) 921
BstYI RGATCY 1 cut(s) 921
Bsu36I CCTNAGG 2 cut(s) 528, 927
BsuRI GGCC 1 cut(s) 717
BtgI CCRYGG 1 cut(s) 1119
BtsCI GGATG 2 cut(s) 718, 937
BveI ACCTGC 2 cut(s) 493, 1113
Cac8I GCNNGC 4 cut(s) 558, 1159, 1163, 1200
CaiI CAGNNNCTG 1 cut(s) 499
CciI TCATGA 1 cut(s) 592
CfoI GCGC 2 cut(s) 94, 352
Cfr13I GGNCC 1 cut(s) 757
CseI GACGC 2 cut(s) 505, 1097
Csp6I GTAC 1 cut(s) 214
CviAII CATG 5 cut(s) 353, 469, 593, 655, 1120
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 6 cut(s) 314, 528, 636, 770, 927, 967
DinI GGCGCC 1 cut(s) 93
DpnI GATC 6 cut(s) 323, 357, 653, 668, 923, 1101
DpnII GATC 6 cut(s) 321, 355, 651, 666, 921, 1099
DraI TTTAAA 1 cut(s) 1215
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Ecl136II GAGCTC 1 cut(s) 858
Eco130I CCWWGG 3 cut(s) 329, 662, 1119
Eco24I GRGCYC 1 cut(s) 860
Eco31I GGTCTC 1 cut(s) 986
Eco47I GGWCC 1 cut(s) 757
Eco53kI GAGCTC 1 cut(s) 858
Eco57I CTGAAG 3 cut(s) 534, 867, 945
Eco81I CCTNAGG 2 cut(s) 528, 927
Eco88I CYCGRG 2 cut(s) 676, 875
Eco91I GGTNACC 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 858
EcoO109I RGGNCCY 1 cut(s) 757
EcoO65I GGTNACC 1 cut(s) 50
EcoRI GAATTC 2 cut(s) 588, 797
EcoRII CCWGG 2 cut(s) 246, 450
EcoT14I CCWWGG 3 cut(s) 329, 662, 1119
EcoT38I GRGCYC 1 cut(s) 860
EgeI GGCGCC 1 cut(s) 93
EheI GGCGCC 1 cut(s) 93
ErhI CCWWGG 3 cut(s) 329, 662, 1119
FaeI CATG 5 cut(s) 356, 472, 596, 658, 1123
FatI CATG 5 cut(s) 352, 468, 592, 654, 1119
FauI CCCGC 1 cut(s) 432
Fnu4HI GCNGC 3 cut(s) 500, 641, 1203
FokI GGATG 2 cut(s) 725, 944
FriOI GRGCYC 1 cut(s) 860
Fsp4HI GCNGC 3 cut(s) 500, 641, 1203
FspBI CTAG 3 cut(s) 330, 663, 1064
GlaI GCGC 2 cut(s) 93, 351
GluI GCNGC 3 cut(s) 500, 641, 1203
GsuI CTGGAG 1 cut(s) 810
HaeII RGCGCY 1 cut(s) 95
HaeIII GGCC 1 cut(s) 717
HapII CCGG 4 cut(s) 74, 108, 359, 374
HgaI GACGC 2 cut(s) 505, 1097
HhaI GCGC 2 cut(s) 94, 352
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 5 cut(s) 356, 472, 596, 658, 1123
Hin6I GCGC 2 cut(s) 92, 350
HinP1I GCGC 2 cut(s) 92, 350
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 6 cut(s) 335, 460, 848, 965, 998, 1124
HpaII CCGG 4 cut(s) 74, 108, 359, 374
HphI GGTGA 7 cut(s) 44, 202, 516, 517, 651, 1094, 1134
Hpy166II GTNNAC 1 cut(s) 16
Hpy188III TCNNGA 8 cut(s) 74, 235, 359, 394, 593, 676, 827, 875
Hpy8I GTNNAC 1 cut(s) 16
HpyAV CCTTC 7 cut(s) 107, 429, 679, 728, 824, 891, 1126
HpyCH4V TGCA 8 cut(s) 32, 64, 414, 472, 478, 502, 812, 1027
HpyF10VI GCNNNNNNNGC 3 cut(s) 100, 347, 562
HpyF3I CTNAG 6 cut(s) 314, 528, 636, 770, 927, 967
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 5 cut(s) 356, 472, 596, 658, 1123
HspAI GCGC 2 cut(s) 92, 350
KasI GGCGCC 1 cut(s) 91
Kpn2I TCCGGA 2 cut(s) 73, 358
Kzo9I GATC 6 cut(s) 321, 355, 651, 666, 921, 1099
LmnI GCTCC 6 cut(s) 76, 76, 100, 379, 855, 863
Lsp1109I GCAGC 2 cut(s) 486, 1189
LweI GCATC 1 cut(s) 799
MaeI CTAG 3 cut(s) 330, 663, 1064
MaeIII GTNAC 3 cut(s) 50, 657, 940
MalI GATC 6 cut(s) 323, 357, 653, 668, 923, 1101
MboI GATC 6 cut(s) 321, 355, 651, 666, 921, 1099
MfeI CAATTG 1 cut(s) 813
MflI RGATCY 1 cut(s) 921
MhlI GDGCHC 2 cut(s) 778, 860
MluCI AATT 7 cut(s) 269, 418, 588, 797, 813, 900, 1049
Mly113I GGCGCC 1 cut(s) 92
MlyI GAGTC 4 cut(s) 344, 857, 959, 1118
MroI TCCGGA 2 cut(s) 73, 358
MroXI GAANNNNTTC 2 cut(s) 230, 834
MseI TTAA 3 cut(s) 408, 537, 1214
MspCI CTTAAG 1 cut(s) 407
MspI CCGG 4 cut(s) 74, 108, 359, 374
MspR9I CCNGG 3 cut(s) 109, 248, 452
MunI CAATTG 1 cut(s) 813
Mva1269I GAATGC 3 cut(s) 64, 103, 834
MvaI CCWGG 2 cut(s) 248, 452
MwoI GCNNNNNNNGC 3 cut(s) 100, 347, 562
NarI GGCGCC 1 cut(s) 92
NciI CCSGG 1 cut(s) 109
NcoI CCATGG 1 cut(s) 1119
NdeII GATC 6 cut(s) 321, 355, 651, 666, 921, 1099
NlaIII CATG 5 cut(s) 356, 472, 596, 658, 1123
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 2 cut(s) 50, 657
NspI RCATGY 1 cut(s) 472
PaeR7I CTCGAG 2 cut(s) 676, 875
PagI TCATGA 1 cut(s) 592
PaqCI CACCTGC 2 cut(s) 493, 1113
PctI GAATGC 3 cut(s) 64, 103, 834
PdmI GAANNNNTTC 2 cut(s) 230, 834
PfeI GAWTC 2 cut(s) 460, 998
PkrI GCNGC 3 cut(s) 501, 642, 1204
PleI GAGTC 4 cut(s) 343, 856, 959, 1118
PluTI GGCGCC 1 cut(s) 95
PpsI GAGTC 4 cut(s) 343, 856, 959, 1118
PpuMI RGGWCCY 1 cut(s) 757
Psp124BI GAGCTC 1 cut(s) 860
Psp5II RGGWCCY 1 cut(s) 757
Psp6I CCWGG 2 cut(s) 246, 450
PspEI GGTNACC 1 cut(s) 50
PspGI CCWGG 2 cut(s) 246, 450
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 757
PspPPI RGGWCCY 1 cut(s) 757
PstI CTGCAG 1 cut(s) 504
PstNI CAGNNNCTG 1 cut(s) 499
PsuI RGATCY 1 cut(s) 921
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SacI GAGCTC 1 cut(s) 860
SaqAI TTAA 3 cut(s) 408, 537, 1214
SatI GCNGC 3 cut(s) 500, 641, 1203
Sau3AI GATC 6 cut(s) 321, 355, 651, 666, 921, 1099
Sau96I GGNCC 1 cut(s) 757
SchI GAGTC 4 cut(s) 344, 857, 959, 1118
ScrFI CCNGG 3 cut(s) 109, 248, 452
SduI GDGCHC 2 cut(s) 778, 860
SfaNI GCATC 1 cut(s) 799
SfcI CTRYAG 2 cut(s) 429, 500
SfoI GGCGCC 1 cut(s) 93
Sfr274I CTCGAG 2 cut(s) 676, 875
SinI GGWCC 1 cut(s) 757
SlaI CTCGAG 2 cut(s) 676, 875
SmlI CTYRAG 6 cut(s) 170, 200, 407, 676, 761, 875
SmoI CTYRAG 6 cut(s) 170, 200, 407, 676, 761, 875
Sse9I AATT 7 cut(s) 269, 418, 588, 797, 813, 900, 1049
SsiI CCGC 3 cut(s) 132, 439, 641
SspDI GGCGCC 1 cut(s) 91
SspI AATATT 1 cut(s) 1191
SspMI CTAG 3 cut(s) 330, 663, 1064
SstI GAGCTC 1 cut(s) 860
StyD4I CCNGG 3 cut(s) 107, 246, 450
StyI CCWWGG 3 cut(s) 329, 662, 1119
TaqI TCGA 9 cut(s) 123, 234, 324, 677, 701, 721, 750, 876, 1182
TaqII GACCGA 1 cut(s) 1010
TasI AATT 7 cut(s) 269, 418, 588, 797, 813, 900, 1049
TauI GCSGC 1 cut(s) 643
TfiI GAWTC 2 cut(s) 460, 998
Tru1I TTAA 3 cut(s) 408, 537, 1214
Tru9I TTAA 3 cut(s) 408, 537, 1214
TseFI GTSAC 2 cut(s) 50, 657
TseI GCWGC 2 cut(s) 499, 1202
Tsp45I GTSAC 2 cut(s) 50, 657
TspDTI ATGAA 2 cut(s) 581, 963
Vha464I CTTAAG 1 cut(s) 407
VpaK11BI GGWCC 1 cut(s) 757
XapI RAATTY 4 cut(s) 588, 797, 900, 1049
XceI RCATGY 1 cut(s) 472
XhoI CTCGAG 2 cut(s) 676, 875
XmaJI CCTAGG 2 cut(s) 329, 662
XmnI GAANNNNTTC 2 cut(s) 230, 834
XspI CTAG 3 cut(s) 330, 663, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.