Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007087

Physical Location & Seq

Genomic Coordinates Reverse (-)

23720672 .. 23721092

Gene Structure 421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1150100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGATGGATAGAAGCAAGGAACGCTCTGAGGATGACCTTTCAACAGACGTGGATATATCTTCGGACTCTGAAGATTTATCCGATATTTTCTGTACTGATTCTGACAAGGAGACCGAGAAGAAGGCAGATCGACCTCTGTATTTGGAAGAGTTTGAAAAGTTTACTATTGAAAGTGATGGAGAACCTGAAGATTTTAAGGATCACCTGCGTCAAATATCTAGGGATGCAAAGAAGGATAAATCATTGGACGAAGATGCTGGCTTGCCAAATTTTGATGAGGTTGATCGAATATTTCTGCGTGCTGCTTCACTTTTAAGGAAAAAAAGTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CRS1_YhbY EF-hand_1 EF-hand_5

Protein Analysis

111

Amino Acids

12.8

Weight (kDa)

4.47

Isoelectric Point (pI)

54.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25440 AT3G25440 AT3G25440 AT3G25440 AT3G25440
fragaria_vesca	FvH4_2g17610 FvH4_2g17610 FvH4_2g17610
malus_domestica	MD05G1156500.v1.1 MD10G1150100.v1.1 MD10G1150200.v1.1 MD10G1150300.v1.1
prunus_persica	Prupe.8G188700_v2.0.a1
pyrus_communis	pycom05g14900 pycom10g12950
rosa_chinensis	RchiOBHm_Chr6g0282591
rosa_laevigata	RLG00000012883
rosa_multiflora	Rmu_co8290349.1_g000001 Rmu_sc0000283.1_g000003 Rmu_sc0005697.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186240
rosa_rugosa	Rorug06G0147900
rosa_samantha	Rh6CG263200 Rh6DG255300
rosa_wichuraiana	Rw6G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	213
Acc36I	ACCTGC	1 cut(s)	213
AclWI	GGATC	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	268
AcuI	CTGAAG	2 cut(s)	90, 207
AfaI	GTAC	1 cut(s)	94
AgsI	TTSAA	3 cut(s)	42, 155, 170
AjiI	CACGTC	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	268
AsuHPI	GGTGA	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	219
BfuAI	ACCTGC	1 cut(s)	213
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
BmgBI	CACGTC	1 cut(s)	49
BmsI	GCATC	2 cut(s)	214, 244
BsaI	GGTCTC	1 cut(s)	104
BseGI	GGATG	2 cut(s)	37, 229
BseMII	CTCAG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	289
BsmAI	GTCTC	1 cut(s)	104
Bso31I	GGTCTC	1 cut(s)	104
Bsp143I	GATC	3 cut(s)	127, 199, 283
BspCNI	CTCAG	1 cut(s)	19
BspMI	ACCTGC	1 cut(s)	213
BspPI	GGATC	1 cut(s)	207
BspTNI	GGTCTC	1 cut(s)	104
BssMI	GATC	3 cut(s)	127, 199, 283
Bst6I	CTCTTC	1 cut(s)	141
BstC8I	GCNNGC	3 cut(s)	259, 263, 300
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	37, 229
BstKTI	GATC	3 cut(s)	130, 202, 286
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	3 cut(s)	127, 199, 283
BstMWI	GCNNNNNNNGC	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	289
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	37, 229
BveI	ACCTGC	1 cut(s)	213
Cac8I	GCNNGC	3 cut(s)	259, 263, 300
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	93
CspCI	CAANNNNNGTGG	2 cut(s)	30, 65
CviJI	RGCY	1 cut(s)	261
CviKI_1	RGCY	1 cut(s)	261
CviQI	GTAC	1 cut(s)	93
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	3 cut(s)	129, 201, 285
DpnII	GATC	3 cut(s)	127, 199, 283
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	104
Eco57I	CTGAAG	2 cut(s)	90, 207
FaiI	YATR	1 cut(s)	56
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	2 cut(s)	44, 236
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	1 cut(s)	303
HgaI	GACGC	1 cut(s)	197
HinfI	GANTC	2 cut(s)	65, 98
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	5 cut(s)	28, 64, 70, 82, 103
Hpy8I	GTNNAC	1 cut(s)	162
HpyAV	CCTTC	2 cut(s)	115, 226
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	21
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	48
Kzo9I	GATC	3 cut(s)	127, 199, 283
LpnPI	CCDG	3 cut(s)	198, 218, 243
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	2 cut(s)	214, 244
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	1 cut(s)	48
MalI	GATC	3 cut(s)	129, 201, 285
MboI	GATC	3 cut(s)	127, 199, 283
MboII	GAAGA	6 cut(s)	51, 83, 130, 158, 200, 263
MluCI	AATT	1 cut(s)	268
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	3 cut(s)	22, 144, 271
MseI	TTAA	2 cut(s)	195, 314
MwoI	GCNNNNNNNGC	1 cut(s)	21
NdeII	GATC	3 cut(s)	127, 199, 283
PaqCI	CACCTGC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	304
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
RsaI	GTAC	1 cut(s)	94
RsaNI	GTAC	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	195, 314
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	3 cut(s)	127, 199, 283
SchI	GAGTC	1 cut(s)	59
SetI	ASST	6 cut(s)	39, 51, 136, 187, 207, 282
SfaNI	GCATC	2 cut(s)	214, 244
Sse9I	AATT	1 cut(s)	268
SspI	AATATT	1 cut(s)	291
SspMI	CTAG	1 cut(s)	219
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	2 cut(s)	130, 286
TaqII	GACCGA	1 cut(s)	128
TasI	AATT	1 cut(s)	268
TatI	WGTACW	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	2 cut(s)	195, 314
Tru9I	TTAA	2 cut(s)	195, 314
TseI	GCWGC	1 cut(s)	302
XapI	RAATTY	1 cut(s)	268
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.