Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007087

Physical Location & Seq

Genomic Coordinates Reverse (-)

23722288 .. 23724340

Gene Structure 2053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1150300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCTAGCTTTGAGATCACGAGAGACGAGATACTTTAAATTCACGATCAGTTTAACTGTCTTATTTCCAAACTTGTATACTCACTGCCGTCAAGTTTGCAGGGGAGTGTTATGGAGTTACACACTTAATCACCAATTCAATGCCAATTCATCGTGTAGCTTGGGTGATGTTGTATGCAAGATGTTCGACGAAAAGCCTGCTGCTTTTGGGGACTTGGTGGGTACTGCGTGGTTTCCGCCGGAGGGCCGTCGATGGGTTTATTCAGCTCCGTATGTTAACACAGAGCACAAAGCTGTGGAGCCGTTGGAAAATTCGAAAGACGGCGGCGCGGGTGCCGATGGAGCTGGTGATGGTAAAGTGAAAAGGAAAAAGCTCAAGGGGAAAAGGGCAGTGGTTAGGTGGCTCAAGTTCTTCAGGTATAAGAAGAAAAAAGATTATGAGAGAATGACTGCTGAGGAGAAAATTCTCCACAAGTTAAGAAAGGCTCAAGGGTGCGTTTGGTACGCAGACGGGACAGAACGGAACGGGACGGGACGGGACGGGACGGGACGGAACGGAACGAAATGGAGGTTCGTGTTATGTTTGAGGAGGGCTACGGGAGAGACAAGGGTAGAAGAGAGGAGGTTACGGGAGAGAAAGGGAGGTAGACAATGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CRS1_YhbY EF-hand_1 EF-hand_5

Protein Analysis

220

Amino Acids

25.21

Weight (kDa)

10.05

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25440 AT3G25440 AT3G25440 AT3G25440 AT3G25440
fragaria_vesca	FvH4_2g17610 FvH4_2g17610 FvH4_2g17610
malus_domestica	MD05G1156500.v1.1 MD10G1150100.v1.1 MD10G1150200.v1.1 MD10G1150300.v1.1
prunus_persica	Prupe.8G188700_v2.0.a1
pyrus_communis	pycom05g14900 pycom10g12950
rosa_chinensis	RchiOBHm_Chr6g0282591
rosa_laevigata	RLG00000012883
rosa_multiflora	Rmu_co8290349.1_g000001 Rmu_sc0000283.1_g000003 Rmu_sc0005697.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186240
rosa_rugosa	Rorug06G0147900
rosa_samantha	Rh6CG263200 Rh6DG255300
rosa_wichuraiana	Rw6G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	332
AccI	GTMKAC	2 cut(s)	77, 646
AccII	CGCG	1 cut(s)	329
AciI	CCGC	3 cut(s)	236, 324, 329
AcsI	RAATTY	3 cut(s)	38, 310, 462
AcuI	CTGAAG	1 cut(s)	397
AfaI	GTAC	2 cut(s)	223, 503
AfiI	CCNNNNNNNGG	2 cut(s)	242, 253
AgsI	TTSAA	1 cut(s)	139
AluBI	AGCT	6 cut(s)	8, 159, 266, 293, 344, 373
AluI	AGCT	6 cut(s)	8, 159, 266, 293, 344, 373
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	2 cut(s)	17, 596
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	3 cut(s)	38, 310, 462
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	1 cut(s)	244
AsuHPI	GGTGA	3 cut(s)	122, 176, 359
AsuII	TTCGAA	1 cut(s)	314
AsuNHI	GCTAGC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	332
BauI	CACGAG	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	288
BbvCI	CCTCAGC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	3 cut(s)	246, 332, 344
BceAI	ACGGC	4 cut(s)	72, 231, 286, 337
BcgI	CGANNNNNNTGC	4 cut(s)	166, 179, 200, 213
BcoDI	GTCTC	2 cut(s)	17, 596
BfaI	CTAG	1 cut(s)	5
BisI	GCNGC	2 cut(s)	201, 325
BlsI	GCNGC	2 cut(s)	202, 326
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	2 cut(s)	300, 334
BmtI	GCTAGC	1 cut(s)	8
Bpu10I	CCTNAGC	1 cut(s)	453
Bpu14I	TTCGAA	1 cut(s)	314
BpuEI	CTTGAG	3 cut(s)	359, 389, 471
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 253
BseLI	CCNNNNNNNGG	2 cut(s)	242, 253
BseMII	CTCAG	1 cut(s)	444
BseRI	GAGGAG	3 cut(s)	470, 601, 634
BseXI	GCAGC	1 cut(s)	187
Bsh1236I	CGCG	1 cut(s)	329
BshFI	GGCC	1 cut(s)	246
BshNI	GGYRCC	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	7 cut(s)	224, 526, 541, 546, 551, 556, 561
BslI	CCNNNNNNNGG	2 cut(s)	242, 253
BsmAI	GTCTC	2 cut(s)	17, 596
BsmBI	CGTCTC	1 cut(s)	17
BsmFI	GGGAC	7 cut(s)	224, 526, 541, 546, 551, 556, 561
BsnI	GGCC	1 cut(s)	246
Bsp119I	TTCGAA	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	14, 45
BspACI	CCGC	3 cut(s)	236, 324, 329
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	1 cut(s)	445
BspFNI	CGCG	1 cut(s)	329
BspLI	GGNNCC	2 cut(s)	300, 334
BspOI	GCTAGC	1 cut(s)	8
BspT104I	TTCGAA	1 cut(s)	314
BspT107I	GGYRCC	1 cut(s)	332
BssMI	GATC	2 cut(s)	14, 45
BssNAI	GTATAC	1 cut(s)	78
BssSI	CACGAG	1 cut(s)	18
Bst1107I	GTATAC	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	18
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	609
BstBI	TTCGAA	1 cut(s)	314
BstC8I	GCNNGC	2 cut(s)	6, 198
BstDEI	CTNAG	1 cut(s)	453
BstFNI	CGCG	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	2 cut(s)	17, 48
BstMAI	GTCTC	2 cut(s)	17, 596
BstMBI	GATC	2 cut(s)	14, 45
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	187
BstZ17I	GTATAC	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	246
BtsI	GCAGTG	2 cut(s)	82, 396
BtsIMutI	CAGTG	2 cut(s)	82, 396
Cac8I	GCNNGC	2 cut(s)	6, 198
CfoI	GCGC	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	222, 502
CviQI	GTAC	2 cut(s)	222, 502
DdeI	CTNAG	1 cut(s)	453
DpnI	GATC	2 cut(s)	16, 47
DpnII	GATC	2 cut(s)	14, 45
DraI	TTTAAA	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
EciI	GGCGGA	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	397
Esp3I	CGTCTC	1 cut(s)	17
FaiI	YATR	7 cut(s)	78, 112, 175, 273, 420, 438, 580
FaqI	GGGAC	7 cut(s)	224, 526, 541, 546, 551, 556, 561
FauI	CCCGC	1 cut(s)	322
FblI	GTMKAC	2 cut(s)	77, 646
Fnu4HI	GCNGC	2 cut(s)	201, 325
Fsp4HI	GCNGC	2 cut(s)	201, 325
FspBI	CTAG	1 cut(s)	5
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	2 cut(s)	201, 325
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	1 cut(s)	239
HhaI	GCGC	1 cut(s)	329
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HpaI	GTTAAC	1 cut(s)	277
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	3 cut(s)	122, 176, 359
Hpy166II	GTNNAC	3 cut(s)	78, 277, 647
Hpy188III	TCNNGA	2 cut(s)	18, 43
Hpy8I	GTNNAC	3 cut(s)	78, 277, 647
Hpy99I	CGWCG	2 cut(s)	191, 252
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	2 cut(s)	99, 177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	1 cut(s)	453
HspAI	GCGC	1 cut(s)	327
KspAI	GTTAAC	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	14, 45
LmnI	GCTCC	3 cut(s)	271, 298, 341
LpnPI	CCDG	5 cut(s)	85, 210, 252, 330, 400
Lsp1109I	GCAGC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	5
MaeIII	GTNAC	2 cut(s)	116, 624
MalI	GATC	2 cut(s)	16, 47
MboI	GATC	2 cut(s)	14, 45
MboII	GAAGA	3 cut(s)	403, 436, 626
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	6 cut(s)	38, 134, 145, 310, 462, 655
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	8 cut(s)	235, 448, 561, 579, 582, 612, 615, 635
MseI	TTAA	6 cut(s)	36, 53, 126, 276, 476, 658
MspI	CCGG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	1 cut(s)	341
NdeII	GATC	2 cut(s)	14, 45
NheI	GCTAGC	1 cut(s)	4
NlaIV	GGNNCC	2 cut(s)	300, 334
NspV	TTCGAA	1 cut(s)	314
PkrI	GCNGC	2 cut(s)	202, 326
PspN4I	GGNNCC	2 cut(s)	300, 334
PspPI	GGNCC	1 cut(s)	244
RsaI	GTAC	2 cut(s)	223, 503
RsaNI	GTAC	2 cut(s)	222, 502
SaqAI	TTAA	6 cut(s)	36, 53, 126, 276, 476, 658
SatI	GCNGC	2 cut(s)	201, 325
Sau3AI	GATC	2 cut(s)	14, 45
Sau96I	GGNCC	1 cut(s)	244
SduI	GDGCHC	1 cut(s)	288
SfuI	TTCGAA	1 cut(s)	314
SmlI	CTYRAG	3 cut(s)	374, 404, 486
SmoI	CTYRAG	3 cut(s)	374, 404, 486
Sse9I	AATT	6 cut(s)	38, 134, 145, 310, 462, 655
SsiI	CCGC	3 cut(s)	236, 324, 329
SspMI	CTAG	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	3 cut(s)	186, 250, 314
TasI	AATT	6 cut(s)	38, 134, 145, 310, 462, 655
TauI	GCSGC	1 cut(s)	327
Tru1I	TTAA	6 cut(s)	36, 53, 126, 276, 476, 658
Tru9I	TTAA	6 cut(s)	36, 53, 126, 276, 476, 658
TscAI	CASTG	2 cut(s)	89, 396
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	138
TspGWI	ACGGA	4 cut(s)	258, 535, 565, 570
TspRI	CASTG	2 cut(s)	89, 396
XapI	RAATTY	3 cut(s)	38, 310, 462
XmiI	GTMKAC	2 cut(s)	77, 646
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.