Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005697.1

Orthogroup ID

OG0007087

Physical Location & Seq

Genomic Coordinates Forward (+)

12120 .. 13136

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005697.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atgactctttcttgttccccgcgtcttctcaaaccccataatcacctcaagattctcaaaagcagtagcttgggtggtgttgtatgcaaggtgttcgacgaaatgcctgcttgtgcggacccaattggtattgcaaggcttccattggagggtcacagatgggtgcattcggccccggagcacaaagctgcggcgccattggagcgttctggagaaggtaaagtcgatgatggtggcggtggtaatgctaaagtgaagaggaaaaagctcaaggggaaacgagctgtggttaggtggctcaagttcttcaggtacaagaagaagaaagatttcgagagaatgaccgcggaagaaaagattctacacaaattgagaaagcaggctcaaaggaaagaggagaggctactggaagctcttaagaagatcgagccgtcggagtcggcagaaaccgcccatgatccggagatattgacacccgaggagcacttcttctttttgaagatggggctcaagtgcaagaattatgtgcccgtcggaaggcgggggatataccagggtgtgattctgaacatgcatttgcattggaagaaacatcaaacgctgcaggtgatagtcaagacattctcacctgaggaggttaaggatattgcttccgagctggcgaggttgacaggagggattgtgctcggaattcatgaggagtacacgattattatgtatagagggaagaactattcgcagccgccaacagagattatgtcacctaggatcactctctcgaggaagaaggttctgttctactctacttctattaaatttatgacttttacagaacagatttggagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CRS1_YhbY EF-hand_1 EF-hand_5

Protein Analysis

282

Amino Acids

32.32

Weight (kDa)

9.82

Isoelectric Point (pI)

56.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25440 AT3G25440 AT3G25440 AT3G25440 AT3G25440
fragaria_vesca	FvH4_2g17610 FvH4_2g17610 FvH4_2g17610
malus_domestica	MD05G1156500.v1.1 MD10G1150100.v1.1 MD10G1150200.v1.1 MD10G1150300.v1.1
prunus_persica	Prupe.8G188700_v2.0.a1
pyrus_communis	pycom05g14900 pycom10g12950
rosa_chinensis	RchiOBHm_Chr6g0282591
rosa_laevigata	RLG00000012883
rosa_multiflora	Rmu_co8290349.1_g000001 Rmu_sc0000283.1_g000003 Rmu_sc0005697.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186240
rosa_rugosa	Rorug06G0147900
rosa_samantha	Rh6CG263200 Rh6DG255300
rosa_wichuraiana	Rw6G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	595
Acc36I	ACCTGC	1 cut(s)	595
AccB1I	GGYRCC	1 cut(s)	193
AccII	CGCG	2 cut(s)	22, 347
AccIII	TCCGGA	1 cut(s)	460
AciI	CCGC	9 cut(s)	20, 116, 191, 237, 345, 347, 450, 541, 743
AclWI	GGATC	2 cut(s)	452, 776
AcsI	RAATTY	2 cut(s)	690, 815
AcuI	CTGAAG	1 cut(s)	292
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	2 cut(s)	314, 704
AfiI	CCNNNNNNNGG	3 cut(s)	149, 460, 537
AflII	CTTAAG	1 cut(s)	416
AgsI	TTSAA	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	552
AluBI	AGCT	6 cut(s)	69, 188, 268, 284, 413, 658
AluI	AGCT	6 cut(s)	69, 188, 268, 284, 413, 658
Alw21I	GWGCWC	3 cut(s)	183, 486, 687
AlwI	GGATC	2 cut(s)	452, 776
Ama87I	CYCGRG	2 cut(s)	476, 778
Aor13HI	TCCGGA	1 cut(s)	460
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	3 cut(s)	188, 601, 739
ApoI	RAATTY	2 cut(s)	690, 815
Asp700I	GAANNNNTTC	2 cut(s)	329, 357
AspA2I	CCTAGG	1 cut(s)	764
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	2 cut(s)	118, 172
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	4 cut(s)	35, 618, 619, 753
AvaI	CYCGRG	2 cut(s)	476, 778
AvaII	GGWCC	1 cut(s)	118
AvrII	CCTAGG	1 cut(s)	764
AxyI	CCTNAGG	1 cut(s)	630
BaeGI	GKGCMC	1 cut(s)	531
BanI	GGYRCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	510
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	3 cut(s)	183, 486, 687
BbvI	GCAGC	3 cut(s)	175, 588, 751
BccI	CCATC	3 cut(s)	153, 224, 496
BceAI	ACGGC	1 cut(s)	415
BcgI	CGANNNNNNTGC	4 cut(s)	76, 89, 110, 123
BciT130I	CCWGG	1 cut(s)	554
BcnI	CCSGG	1 cut(s)	176
BfaI	CTAG	1 cut(s)	765
BfmI	CTRYAG	1 cut(s)	602
BfoI	RGCGCY	1 cut(s)	197
BfrI	CTTAAG	1 cut(s)	416
BfuAI	ACCTGC	1 cut(s)	595
BisI	GCNGC	5 cut(s)	189, 192, 602, 740, 743
BlnI	CCTAGG	1 cut(s)	764
BlsI	GCNGC	5 cut(s)	190, 193, 603, 741, 744
Bme1390I	CCNGG	2 cut(s)	176, 554
Bme18I	GGWCC	1 cut(s)	118
BmeT110I	CYCGRG	2 cut(s)	476, 778
BmgT120I	GGNCC	2 cut(s)	118, 172
BmiI	GGNNCC	3 cut(s)	120, 174, 195
BmrFI	CCNGG	2 cut(s)	176, 554
BpiI	GAAGAC	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	231
BpuEI	CTTGAG	4 cut(s)	32, 254, 284, 494
BpuMI	CCSGG	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	194
BsaJI	CCNNGG	5 cut(s)	174, 345, 477, 553, 764
BsaWI	WCCGGW	1 cut(s)	460
BsaXI	ACNNNNNCTCC	2 cut(s)	666, 696
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 460, 537
Bse1I	ACTGG	1 cut(s)	411
Bse21I	CCTNAGG	1 cut(s)	630
BseAI	TCCGGA	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	554
BseDI	CCNNGG	5 cut(s)	174, 345, 477, 553, 764
BseLI	CCNNNNNNNGG	3 cut(s)	149, 460, 537
BseMII	CTCAG	1 cut(s)	621
BseNI	ACTGG	1 cut(s)	411
BseRI	GAGGAG	4 cut(s)	410, 494, 647, 713
BseSI	GKGCMC	1 cut(s)	531
BseXI	GCAGC	3 cut(s)	175, 588, 751
Bsh1236I	CGCG	2 cut(s)	22, 347
BshFI	GGCC	1 cut(s)	173
BshNI	GGYRCC	1 cut(s)	193
BsiHKAI	GWGCWC	3 cut(s)	183, 486, 687
BsiHKCI	CYCGRG	2 cut(s)	476, 778
BsiSI	CCGG	2 cut(s)	176, 461
BslI	CCNNNNNNNGG	3 cut(s)	149, 460, 537
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	173
BsoBI	CYCGRG	2 cut(s)	476, 778
Bsp1286I	GDGCHC	5 cut(s)	183, 486, 510, 531, 687
Bsp13I	TCCGGA	1 cut(s)	460
Bsp143I	GATC	3 cut(s)	423, 457, 768
BspACI	CCGC	9 cut(s)	20, 116, 191, 237, 345, 347, 450, 541, 743
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	622
BspEI	TCCGGA	1 cut(s)	460
BspFNI	CGCG	2 cut(s)	22, 347
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	3 cut(s)	120, 174, 195
BspMAI	CTGCAG	1 cut(s)	606
BspMI	ACCTGC	1 cut(s)	595
BspPI	GGATC	2 cut(s)	452, 776
BspT107I	GGYRCC	1 cut(s)	193
BspTI	CTTAAG	1 cut(s)	416
BsrI	ACTGG	1 cut(s)	411
BssECI	CCNNGG	5 cut(s)	174, 345, 477, 553, 764
BssMI	GATC	3 cut(s)	423, 457, 768
BssNI	GRCGYC	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	764
Bst2UI	CCWGG	1 cut(s)	554
Bst6I	CTCTTC	1 cut(s)	251
BstACI	GRCGYC	1 cut(s)	194
BstAFI	CTTAAG	1 cut(s)	416
BstC8I	GCNNGC	3 cut(s)	108, 381, 660
BstDEI	CTNAG	1 cut(s)	630
BstDSI	CCRYGG	1 cut(s)	345
BstFNI	CGCG	2 cut(s)	22, 347
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	3 cut(s)	426, 460, 771
BstMBI	GATC	3 cut(s)	423, 457, 768
BstMWI	GCNNNNNNNGC	2 cut(s)	202, 449
BstNI	CCWGG	1 cut(s)	554
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	2 cut(s)	174, 552
BstSFI	CTRYAG	1 cut(s)	602
BstSLI	GKGCMC	1 cut(s)	531
BstUI	CGCG	2 cut(s)	22, 347
BstV1I	GCAGC	3 cut(s)	175, 588, 751
BstV2I	GAAGAC	1 cut(s)	17
Bsu36I	CCTNAGG	1 cut(s)	630
BsuRI	GGCC	1 cut(s)	173
BtgI	CCRYGG	1 cut(s)	345
BveI	ACCTGC	1 cut(s)	595
Cac8I	GCNNGC	3 cut(s)	108, 381, 660
CciI	TCATGA	1 cut(s)	694
CfoI	GCGC	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	118, 172
Cfr42I	CCGCGG	1 cut(s)	348
CseI	GACGC	1 cut(s)	11
Csp6I	GTAC	2 cut(s)	313, 703
CviAII	CATG	3 cut(s)	455, 571, 695
CviQI	GTAC	2 cut(s)	313, 703
DdeI	CTNAG	1 cut(s)	630
DinI	GGCGCC	1 cut(s)	195
DpnI	GATC	3 cut(s)	425, 459, 770
DpnII	GATC	3 cut(s)	423, 457, 768
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	764
Eco24I	GRGCYC	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	292
Eco81I	CCTNAGG	1 cut(s)	630
Eco88I	CYCGRG	2 cut(s)	476, 778
EcoRI	GAATTC	1 cut(s)	690
EcoRII	CCWGG	1 cut(s)	552
EcoT14I	CCWWGG	1 cut(s)	764
EcoT22I	ATGCAT	1 cut(s)	576
EcoT38I	GRGCYC	1 cut(s)	510
EgeI	GGCGCC	1 cut(s)	195
EheI	GGCGCC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	764
FaeI	CATG	3 cut(s)	458, 574, 698
FatI	CATG	3 cut(s)	454, 570, 694
FauI	CCCGC	2 cut(s)	27, 534
Fnu4HI	GCNGC	5 cut(s)	189, 192, 602, 740, 743
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	5 cut(s)	189, 192, 602, 740, 743
FspBI	CTAG	1 cut(s)	765
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	5 cut(s)	189, 192, 602, 740, 743
GsuI	CTGGAG	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	2 cut(s)	176, 461
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	3 cut(s)	458, 574, 698
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HincII	GTYRAC	1 cut(s)	669
HindII	GTYRAC	1 cut(s)	669
HinfI	GANTC	5 cut(s)	4, 52, 358, 437, 562
HpaII	CCGG	2 cut(s)	176, 461
HphI	GGTGA	4 cut(s)	35, 618, 619, 753
Hpy166II	GTNNAC	2 cut(s)	669, 705
Hpy188I	TCNGA	5 cut(s)	436, 536, 567, 655, 689
Hpy188III	TCNNGA	7 cut(s)	49, 210, 334, 461, 616, 695, 778
Hpy8I	GTNNAC	2 cut(s)	669, 705
Hpy99I	CGWCG	3 cut(s)	101, 436, 536
HpyAV	CCTTC	3 cut(s)	209, 531, 781
HpyCH4V	TGCA	7 cut(s)	87, 134, 166, 516, 574, 580, 604
HpyF10VI	GCNNNNNNNGC	2 cut(s)	202, 449
HpyF3I	CTNAG	1 cut(s)	630
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	3 cut(s)	458, 574, 698
HspAI	GCGC	1 cut(s)	194
KasI	GGCGCC	1 cut(s)	193
Kpn2I	TCCGGA	1 cut(s)	460
KspI	CCGCGG	1 cut(s)	348
Kzo9I	GATC	3 cut(s)	423, 457, 768
LmnI	GCTCC	3 cut(s)	178, 202, 481
Lsp1109I	GCAGC	3 cut(s)	175, 588, 751
MaeI	CTAG	1 cut(s)	765
MaeIII	GTNAC	2 cut(s)	152, 759
MalI	GATC	3 cut(s)	425, 459, 770
MboI	GATC	3 cut(s)	423, 457, 768
MfeI	CAATTG	1 cut(s)	123
MhlI	GDGCHC	5 cut(s)	183, 486, 510, 531, 687
MluCI	AATT	5 cut(s)	123, 368, 520, 690, 815
Mly113I	GGCGCC	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	2 cut(s)	414, 514
Mph1103I	ATGCAT	1 cut(s)	576
MroI	TCCGGA	1 cut(s)	460
MroXI	GAANNNNTTC	2 cut(s)	329, 357
MseI	TTAA	3 cut(s)	417, 639, 813
MspA1I	CMGCKG	1 cut(s)	347
MspCI	CTTAAG	1 cut(s)	416
MspI	CCGG	2 cut(s)	176, 461
MspR9I	CCNGG	2 cut(s)	176, 554
MunI	CAATTG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	554
MvnI	CGCG	2 cut(s)	22, 347
MwoI	GCNNNNNNNGC	2 cut(s)	202, 449
NarI	GGCGCC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	176
NdeII	GATC	3 cut(s)	423, 457, 768
NlaIII	CATG	3 cut(s)	458, 574, 698
NlaIV	GGNNCC	3 cut(s)	120, 174, 195
NmuCI	GTSAC	2 cut(s)	152, 759
NsiI	ATGCAT	1 cut(s)	576
NspI	RCATGY	1 cut(s)	574
PaeR7I	CTCGAG	1 cut(s)	778
PagI	TCATGA	1 cut(s)	694
PaqCI	CACCTGC	1 cut(s)	595
PctI	GAATGC	1 cut(s)	166
PdmI	GAANNNNTTC	2 cut(s)	329, 357
PfeI	GAWTC	3 cut(s)	52, 358, 562
PkrI	GCNGC	5 cut(s)	190, 193, 603, 741, 744
PleI	GAGTC	1 cut(s)	445
PluTI	GGCGCC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	445
Psp6I	CCWGG	1 cut(s)	552
PspGI	CCWGG	1 cut(s)	552
PspN4I	GGNNCC	3 cut(s)	120, 174, 195
PspPI	GGNCC	2 cut(s)	118, 172
PstI	CTGCAG	1 cut(s)	606
RsaI	GTAC	2 cut(s)	314, 704
RsaNI	GTAC	2 cut(s)	313, 703
SacII	CCGCGG	1 cut(s)	348
SaqAI	TTAA	3 cut(s)	417, 639, 813
SatI	GCNGC	5 cut(s)	189, 192, 602, 740, 743
Sau3AI	GATC	3 cut(s)	423, 457, 768
Sau96I	GGNCC	2 cut(s)	118, 172
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	2 cut(s)	176, 554
SduI	GDGCHC	5 cut(s)	183, 486, 510, 531, 687
SfcI	CTRYAG	1 cut(s)	602
SfoI	GGCGCC	1 cut(s)	195
Sfr274I	CTCGAG	1 cut(s)	778
Sfr303I	CCGCGG	1 cut(s)	348
SgrBI	CCGCGG	1 cut(s)	348
SinI	GGWCC	1 cut(s)	118
SlaI	CTCGAG	1 cut(s)	778
SmlI	CTYRAG	6 cut(s)	47, 269, 299, 416, 509, 778
SmoI	CTYRAG	6 cut(s)	47, 269, 299, 416, 509, 778
Sse9I	AATT	5 cut(s)	123, 368, 520, 690, 815
SsiI	CCGC	9 cut(s)	20, 116, 191, 237, 345, 347, 450, 541, 743
SspDI	GGCGCC	1 cut(s)	193
SspMI	CTAG	1 cut(s)	765
StyD4I	CCNGG	2 cut(s)	174, 552
StyI	CCWWGG	1 cut(s)	764
TaqI	TCGA	5 cut(s)	96, 225, 333, 426, 779
TasI	AATT	5 cut(s)	123, 368, 520, 690, 815
TatI	WGTACW	1 cut(s)	702
TauI	GCSGC	2 cut(s)	194, 745
TfiI	GAWTC	3 cut(s)	52, 358, 562
Tru1I	TTAA	3 cut(s)	417, 639, 813
Tru9I	TTAA	3 cut(s)	417, 639, 813
TseFI	GTSAC	2 cut(s)	152, 759
TseI	GCWGC	3 cut(s)	188, 601, 739
Tsp45I	GTSAC	2 cut(s)	152, 759
TspDTI	ATGAA	1 cut(s)	683
Vha464I	CTTAAG	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	2 cut(s)	690, 815
XceI	RCATGY	1 cut(s)	574
XhoI	CTCGAG	1 cut(s)	778
XmaJI	CCTAGG	1 cut(s)	764
XmnI	GAANNNNTTC	2 cut(s)	329, 357
XspI	CTAG	1 cut(s)	765
Zsp2I	ATGCAT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.