Rmu_sc0000283.1_g000003

CRM domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000283.1
Physical Location & Seq
Forward (+)
12386 .. 14407
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000283.1_g000003.1.cds

Sequence Viewer

Length: 1356 bp
atgcagaaactagtgcggatgactctttcttgttccccgcgtcttctcaaaccccataatcacctcaagattctcaaaagcagtagcttgggtggtgttgtatgcaaggtgttcgacgaaatgcctgcttgtgcggacccaattggtattgcaaggcttccattggagggtcacagatgggtgcattcggccccggagcacaaagctgcggcgccattggagcgttctggagaaggtaaagtcgatgatggtggcggtggtaatgctaaagtgaagaggaaaaagctcaaggggaaacgagctgtggttaggtggctcaagttcttcaggtacaagaagaagaaagatttcgagagaatgaccgcggaagaaaagattctacacaaattgagaaagcaggctcaaaggaaagaggagaggctactggaagctcttaagaagatcgagccgtcggagtcggcagaaaccgcccatgatccggagatattgacacccgaggagcacttcttctttttgaagatggggctcaagtgcaagaattatgtgcccgtcggaaggcgggggatataccagggtgtgattctgaacatgcatttgcattggaagaaacatcaaacgctgcaggtgatagtgaagacattctcacctgaggaggttaaggatattgcttctgagctggcgaggttgacaggagggattgtgctcggaattcatgaggagtacacgattattatgtatagagggaagaactattcgcagccgccaacagagattatgtcacctaggatcactctctcgaggaagaaggctttggataaatcaaagtatatggatggccttcgagcagtaaggaagcacattccgaagctggaacaggaccttgagttgcttagagcacaggctaaaagaaaagttgaatttggttctgatgcttttgaagaaactccagaagatattgagagtgtagagtctgagagctcctcaaacttaaagctggagccttcagataagctcaaagaaattttggatagaagaaaggagagccctgaggatgaccttgtaacagatggagatatggcttcggactcggaagatttatcagatatttttgagaccgactctgacaaggagactgagaacaaaccgcaacgacctctgtatttggaagaatttgagaagttcccagttgaaagcgatggagagcctgatgattttgaggatcatctgcgtcaaatatccatggactcaaagaaggctaaatcactgaacgaagaagatgctggcttgccaaactttgatgaggttgataggatatttctgcgtgctgcttcactgttgaagaaaaaaagaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

451

Amino Acids

51.72

Weight (kDa)

8.54

Isoelectric Point (pI)

60.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 613
Acc36I ACCTGC 1 cut(s) 613
AccB1I GGYRCC 1 cut(s) 211
AccII CGCG 2 cut(s) 40, 365
AccIII TCCGGA 1 cut(s) 478
AclWI GGATC 3 cut(s) 470, 794, 1227
AcsI RAATTY 4 cut(s) 708, 917, 1020, 1169
AcuI CTGAAG 2 cut(s) 310, 987
AcyI GRCGYC 1 cut(s) 212
AfaI GTAC 2 cut(s) 332, 722
AfiI CCNNNNNNNGG 3 cut(s) 167, 478, 555
AflII CTTAAG 1 cut(s) 434
AgsI TTSAA 5 cut(s) 517, 917, 938, 1190, 1339
AhlI ACTAGT 1 cut(s) 10
AjnI CCWGG 1 cut(s) 570
AjuI GAANNNNNNNTTGG 2 cut(s) 794, 826
Alw21I GWGCWC 5 cut(s) 201, 504, 705, 898, 980
Alw26I GTCTC 2 cut(s) 1106, 1124
AlwI GGATC 3 cut(s) 470, 794, 1227
Ama87I CYCGRG 2 cut(s) 494, 796
Aor13HI TCCGGA 1 cut(s) 478
AoxI GGCC 2 cut(s) 189, 835
ApeKI GCWGC 4 cut(s) 206, 619, 757, 1325
ApoI RAATTY 4 cut(s) 708, 917, 1020, 1169
Asp700I GAANNNNTTC 3 cut(s) 347, 375, 638
AspA2I CCTAGG 1 cut(s) 782
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 3 cut(s) 136, 190, 877
AsuC2I CCSGG 1 cut(s) 194
AsuHPI GGTGA 4 cut(s) 53, 636, 637, 771
AvaI CYCGRG 2 cut(s) 494, 796
AvaII GGWCC 2 cut(s) 136, 877
AvrII CCTAGG 1 cut(s) 782
AxyI CCTNAGG 2 cut(s) 648, 1047
BaeGI GKGCMC 1 cut(s) 549
BanI GGYRCC 1 cut(s) 211
BanII GRGCYC 3 cut(s) 528, 980, 1046
BbsI GAAGAC 2 cut(s) 35, 641
Bbv12I GWGCWC 5 cut(s) 201, 504, 705, 898, 980
BbvI GCAGC 4 cut(s) 193, 606, 769, 1312
BccI CCATC 6 cut(s) 171, 242, 514, 827, 1061, 1190
BceAI ACGGC 1 cut(s) 433
BcgI CGANNNNNNTGC 6 cut(s) 94, 107, 128, 141, 1259, 1293
BciT130I CCWGG 1 cut(s) 572
BcnI CCSGG 1 cut(s) 194
BcoDI GTCTC 2 cut(s) 1106, 1124
BcuI ACTAGT 1 cut(s) 10
BfaI CTAG 2 cut(s) 11, 783
BfmI CTRYAG 1 cut(s) 620
BfoI RGCGCY 1 cut(s) 215
BfrI CTTAAG 1 cut(s) 434
BfuAI ACCTGC 1 cut(s) 613
BisI GCNGC 6 cut(s) 207, 210, 620, 758, 761, 1326
BlnI CCTAGG 1 cut(s) 782
BlsI GCNGC 6 cut(s) 208, 211, 621, 759, 762, 1327
Bme1390I CCNGG 2 cut(s) 194, 572
Bme18I GGWCC 2 cut(s) 136, 877
BmeT110I CYCGRG 2 cut(s) 494, 796
BmgT120I GGNCC 3 cut(s) 136, 190, 877
BmiI GGNNCC 4 cut(s) 138, 192, 213, 999
BmrFI CCNGG 2 cut(s) 194, 572
BmrI ACTGGG 1 cut(s) 1178
BmsI GCATC 2 cut(s) 919, 1267
BmuI ACTGGG 1 cut(s) 1178
BpiI GAAGAC 2 cut(s) 35, 641
BplI GAGNNNNNCTC 4 cut(s) 965, 997, 1103, 1135
BpmI CTGGAG 3 cut(s) 249, 930, 1016
BpuEI CTTGAG 5 cut(s) 50, 272, 302, 512, 902
BpuMI CCSGG 1 cut(s) 194
BsaHI GRCGYC 1 cut(s) 212
BsaI GGTCTC 1 cut(s) 1106
BsaJI CCNNGG 6 cut(s) 192, 363, 495, 571, 782, 1239
BsaWI WCCGGW 1 cut(s) 478
BsaXI ACNNNNNCTCC 2 cut(s) 684, 714
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 478, 555
Bse1I ACTGG 2 cut(s) 429, 1184
Bse21I CCTNAGG 2 cut(s) 648, 1047
BseAI TCCGGA 1 cut(s) 478
BseBI CCWGG 1 cut(s) 572
BseDI CCNNGG 6 cut(s) 192, 363, 495, 571, 782, 1239
BseGI GGATG 3 cut(s) 24, 838, 1057
BseLI CCNNNNNNNGG 3 cut(s) 167, 478, 555
BseMII CTCAG 5 cut(s) 639, 663, 963, 1038, 1125
BseNI ACTGG 2 cut(s) 429, 1184
BseRI GAGGAG 5 cut(s) 428, 512, 665, 731, 970
BseSI GKGCMC 1 cut(s) 549
BseXI GCAGC 4 cut(s) 193, 606, 769, 1312
Bsh1236I CGCG 2 cut(s) 40, 365
BshFI GGCC 2 cut(s) 191, 837
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 5 cut(s) 201, 504, 705, 898, 980
BsiHKCI CYCGRG 2 cut(s) 494, 796
BsiSI CCGG 2 cut(s) 194, 479
BslI CCNNNNNNNGG 3 cut(s) 167, 478, 555
BsmAI GTCTC 2 cut(s) 1106, 1124
BsmI GAATGC 1 cut(s) 184
BsnI GGCC 2 cut(s) 191, 837
Bso31I GGTCTC 1 cut(s) 1106
BsoBI CYCGRG 2 cut(s) 494, 796
Bsp1286I GDGCHC 8 cut(s) 201, 504, 528, 549, 705, 898, 980, 1046
Bsp13I TCCGGA 1 cut(s) 478
Bsp143I GATC 4 cut(s) 441, 475, 786, 1219
Bsp19I CCATGG 1 cut(s) 1239
BspANI GGCC 2 cut(s) 191, 837
BspCNI CTCAG 5 cut(s) 640, 664, 964, 1039, 1126
BspEI TCCGGA 1 cut(s) 478
BspFNI CGCG 2 cut(s) 40, 365
BspHI TCATGA 1 cut(s) 712
BspLI GGNNCC 4 cut(s) 138, 192, 213, 999
BspMAI CTGCAG 1 cut(s) 624
BspMI ACCTGC 1 cut(s) 613
BspPI GGATC 3 cut(s) 470, 794, 1227
BspT107I GGYRCC 1 cut(s) 211
BspTI CTTAAG 1 cut(s) 434
BspTNI GGTCTC 1 cut(s) 1106
BsrI ACTGG 2 cut(s) 429, 1184
BssECI CCNNGG 6 cut(s) 192, 363, 495, 571, 782, 1239
BssMI GATC 4 cut(s) 441, 475, 786, 1219
BssNI GRCGYC 1 cut(s) 212
BssT1I CCWWGG 2 cut(s) 782, 1239
Bst2UI CCWGG 1 cut(s) 572
Bst4CI ACNGT 1 cut(s) 1335
Bst6I CTCTTC 1 cut(s) 269
BstACI GRCGYC 1 cut(s) 212
BstAFI CTTAAG 1 cut(s) 434
BstC8I GCNNGC 6 cut(s) 126, 399, 678, 1282, 1286, 1323
BstDEI CTNAG 6 cut(s) 648, 672, 890, 972, 1047, 1134
BstDSI CCRYGG 2 cut(s) 363, 1239
BstF5I GGATG 3 cut(s) 24, 838, 1057
BstFNI CGCG 2 cut(s) 40, 365
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 4 cut(s) 444, 478, 789, 1222
BstMAI GTCTC 2 cut(s) 1106, 1124
BstMBI GATC 4 cut(s) 441, 475, 786, 1219
BstMWI GCNNNNNNNGC 2 cut(s) 220, 467
BstNI CCWGG 1 cut(s) 572
BstNSI RCATGY 1 cut(s) 592
BstSCI CCNGG 2 cut(s) 192, 570
BstSFI CTRYAG 1 cut(s) 620
BstSLI GKGCMC 1 cut(s) 549
BstUI CGCG 2 cut(s) 40, 365
BstV1I GCAGC 4 cut(s) 193, 606, 769, 1312
BstV2I GAAGAC 2 cut(s) 35, 641
Bsu36I CCTNAGG 2 cut(s) 648, 1047
BsuRI GGCC 2 cut(s) 191, 837
BtgI CCRYGG 2 cut(s) 363, 1239
BtgZI GCGATG 1 cut(s) 1209
BtsCI GGATG 3 cut(s) 24, 838, 1057
BtsIMutI CAGTG 2 cut(s) 1262, 1331
BveI ACCTGC 1 cut(s) 613
Cac8I GCNNGC 6 cut(s) 126, 399, 678, 1282, 1286, 1323
CciI TCATGA 1 cut(s) 712
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 3 cut(s) 136, 190, 877
Cfr42I CCGCGG 1 cut(s) 366
CseI GACGC 2 cut(s) 29, 1217
Csp6I GTAC 2 cut(s) 331, 721
CviAII CATG 4 cut(s) 473, 589, 713, 1240
CviQI GTAC 2 cut(s) 331, 721
DdeI CTNAG 6 cut(s) 648, 672, 890, 972, 1047, 1134
DinI GGCGCC 1 cut(s) 213
DpnI GATC 4 cut(s) 443, 477, 788, 1221
DpnII GATC 4 cut(s) 441, 475, 786, 1219
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Ecl136II GAGCTC 1 cut(s) 978
Eco130I CCWWGG 2 cut(s) 782, 1239
Eco24I GRGCYC 3 cut(s) 528, 980, 1046
Eco31I GGTCTC 1 cut(s) 1106
Eco47I GGWCC 2 cut(s) 136, 877
Eco53kI GAGCTC 1 cut(s) 978
Eco57I CTGAAG 2 cut(s) 310, 987
Eco81I CCTNAGG 2 cut(s) 648, 1047
Eco88I CYCGRG 2 cut(s) 494, 796
EcoICRI GAGCTC 1 cut(s) 978
EcoO109I RGGNCCY 1 cut(s) 877
EcoRI GAATTC 1 cut(s) 708
EcoRII CCWGG 1 cut(s) 570
EcoT14I CCWWGG 2 cut(s) 782, 1239
EcoT22I ATGCAT 1 cut(s) 594
EcoT38I GRGCYC 3 cut(s) 528, 980, 1046
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
ErhI CCWWGG 2 cut(s) 782, 1239
FaeI CATG 4 cut(s) 476, 592, 716, 1243
FatI CATG 4 cut(s) 472, 588, 712, 1239
FauI CCCGC 2 cut(s) 45, 552
Fnu4HI GCNGC 6 cut(s) 207, 210, 620, 758, 761, 1326
FokI GGATG 3 cut(s) 31, 845, 1064
FriOI GRGCYC 3 cut(s) 528, 980, 1046
Fsp4HI GCNGC 6 cut(s) 207, 210, 620, 758, 761, 1326
FspBI CTAG 2 cut(s) 11, 783
GlaI GCGC 1 cut(s) 213
GluI GCNGC 6 cut(s) 207, 210, 620, 758, 761, 1326
GsuI CTGGAG 3 cut(s) 249, 930, 1016
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 2 cut(s) 191, 837
HapII CCGG 2 cut(s) 194, 479
HgaI GACGC 2 cut(s) 29, 1217
HhaI GCGC 1 cut(s) 214
Hin1I GRCGYC 1 cut(s) 212
Hin1II CATG 4 cut(s) 476, 592, 716, 1243
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HincII GTYRAC 1 cut(s) 687
HindII GTYRAC 1 cut(s) 687
HinfI GANTC 9 cut(s) 22, 70, 376, 455, 580, 968, 1085, 1118, 1244
HpaII CCGG 2 cut(s) 194, 479
HphI GGTGA 4 cut(s) 53, 636, 637, 771
Hpy166II GTNNAC 2 cut(s) 687, 723
Hpy188III TCNNGA 7 cut(s) 67, 228, 352, 479, 713, 796, 947
Hpy8I GTNNAC 2 cut(s) 687, 723
Hpy99I CGWCG 3 cut(s) 119, 454, 554
HpyAV CCTTC 6 cut(s) 227, 549, 799, 848, 1011, 1246
HpyCH4III ACNGT 1 cut(s) 1335
HpyCH4V TGCA 8 cut(s) 4, 105, 152, 184, 534, 592, 598, 622
HpyF10VI GCNNNNNNNGC 2 cut(s) 220, 467
HpyF3I CTNAG 6 cut(s) 648, 672, 890, 972, 1047, 1134
Hsp92I GRCGYC 1 cut(s) 212
Hsp92II CATG 4 cut(s) 476, 592, 716, 1243
HspAI GCGC 1 cut(s) 212
KasI GGCGCC 1 cut(s) 211
Kpn2I TCCGGA 1 cut(s) 478
KspI CCGCGG 1 cut(s) 366
Kzo9I GATC 4 cut(s) 441, 475, 786, 1219
LmnI GCTCC 5 cut(s) 196, 220, 499, 983, 997
Lsp1109I GCAGC 4 cut(s) 193, 606, 769, 1312
LweI GCATC 2 cut(s) 919, 1267
MaeI CTAG 2 cut(s) 11, 783
MaeIII GTNAC 3 cut(s) 170, 777, 1060
MalI GATC 4 cut(s) 443, 477, 788, 1221
MboI GATC 4 cut(s) 441, 475, 786, 1219
MfeI CAATTG 1 cut(s) 141
MhlI GDGCHC 8 cut(s) 201, 504, 528, 549, 705, 898, 980, 1046
MluCI AATT 7 cut(s) 141, 386, 538, 708, 917, 1020, 1169
Mly113I GGCGCC 1 cut(s) 212
MlyI GAGTC 6 cut(s) 16, 464, 977, 1079, 1112, 1238
MmeI TCCRAC 2 cut(s) 432, 532
Mph1103I ATGCAT 1 cut(s) 594
MroI TCCGGA 1 cut(s) 478
MroXI GAANNNNTTC 3 cut(s) 347, 375, 638
MseI TTAA 3 cut(s) 435, 657, 989
MspA1I CMGCKG 1 cut(s) 365
MspCI CTTAAG 1 cut(s) 434
MspI CCGG 2 cut(s) 194, 479
MspR9I CCNGG 2 cut(s) 194, 572
MunI CAATTG 1 cut(s) 141
Mva1269I GAATGC 1 cut(s) 184
MvaI CCWGG 1 cut(s) 572
MvnI CGCG 2 cut(s) 40, 365
MwoI GCNNNNNNNGC 2 cut(s) 220, 467
NarI GGCGCC 1 cut(s) 212
NciI CCSGG 1 cut(s) 194
NcoI CCATGG 1 cut(s) 1239
NdeII GATC 4 cut(s) 441, 475, 786, 1219
NlaIII CATG 4 cut(s) 476, 592, 716, 1243
NlaIV GGNNCC 4 cut(s) 138, 192, 213, 999
NmuCI GTSAC 2 cut(s) 170, 777
NsiI ATGCAT 1 cut(s) 594
NspI RCATGY 1 cut(s) 592
PaeR7I CTCGAG 1 cut(s) 796
PagI TCATGA 1 cut(s) 712
PaqCI CACCTGC 1 cut(s) 613
PctI GAATGC 1 cut(s) 184
PdmI GAANNNNTTC 3 cut(s) 347, 375, 638
PfeI GAWTC 3 cut(s) 70, 376, 580
PkrI GCNGC 6 cut(s) 208, 211, 621, 759, 762, 1327
PleI GAGTC 6 cut(s) 16, 463, 976, 1079, 1112, 1238
PluTI GGCGCC 1 cut(s) 215
PpsI GAGTC 6 cut(s) 16, 463, 976, 1079, 1112, 1238
PpuMI RGGWCCY 1 cut(s) 877
Psp124BI GAGCTC 1 cut(s) 980
Psp5II RGGWCCY 1 cut(s) 877
Psp6I CCWGG 1 cut(s) 570
PspGI CCWGG 1 cut(s) 570
PspN4I GGNNCC 4 cut(s) 138, 192, 213, 999
PspPI GGNCC 3 cut(s) 136, 190, 877
PspPPI RGGWCCY 1 cut(s) 877
PstI CTGCAG 1 cut(s) 624
RsaI GTAC 2 cut(s) 332, 722
RsaNI GTAC 2 cut(s) 331, 721
SacI GAGCTC 1 cut(s) 980
SacII CCGCGG 1 cut(s) 366
SaqAI TTAA 3 cut(s) 435, 657, 989
SatI GCNGC 6 cut(s) 207, 210, 620, 758, 761, 1326
Sau3AI GATC 4 cut(s) 441, 475, 786, 1219
Sau96I GGNCC 3 cut(s) 136, 190, 877
SchI GAGTC 6 cut(s) 16, 464, 977, 1079, 1112, 1238
ScrFI CCNGG 2 cut(s) 194, 572
SduI GDGCHC 8 cut(s) 201, 504, 528, 549, 705, 898, 980, 1046
SfaNI GCATC 2 cut(s) 919, 1267
SfcI CTRYAG 1 cut(s) 620
SfoI GGCGCC 1 cut(s) 213
Sfr274I CTCGAG 1 cut(s) 796
Sfr303I CCGCGG 1 cut(s) 366
SgrBI CCGCGG 1 cut(s) 366
SinI GGWCC 2 cut(s) 136, 877
SlaI CTCGAG 1 cut(s) 796
SmlI CTYRAG 7 cut(s) 65, 287, 317, 434, 527, 796, 881
SmoI CTYRAG 7 cut(s) 65, 287, 317, 434, 527, 796, 881
SpeI ACTAGT 1 cut(s) 10
Sse9I AATT 7 cut(s) 141, 386, 538, 708, 917, 1020, 1169
SspDI GGCGCC 1 cut(s) 211
SspMI CTAG 2 cut(s) 11, 783
SstI GAGCTC 1 cut(s) 980
StyD4I CCNGG 2 cut(s) 192, 570
StyI CCWWGG 2 cut(s) 782, 1239
TaaI ACNGT 1 cut(s) 1335
TaqI TCGA 6 cut(s) 114, 243, 351, 444, 797, 841
TaqII GACCGA 1 cut(s) 1130
TasI AATT 7 cut(s) 141, 386, 538, 708, 917, 1020, 1169
TatI WGTACW 1 cut(s) 720
TauI GCSGC 2 cut(s) 212, 763
TfiI GAWTC 3 cut(s) 70, 376, 580
Tru1I TTAA 3 cut(s) 435, 657, 989
Tru9I TTAA 3 cut(s) 435, 657, 989
TscAI CASTG 2 cut(s) 1269, 1338
TseFI GTSAC 2 cut(s) 170, 777
TseI GCWGC 4 cut(s) 206, 619, 757, 1325
Tsp45I GTSAC 2 cut(s) 170, 777
TspDTI ATGAA 1 cut(s) 701
TspRI CASTG 2 cut(s) 1269, 1338
Vha464I CTTAAG 1 cut(s) 434
VpaK11BI GGWCC 2 cut(s) 136, 877
XapI RAATTY 4 cut(s) 708, 917, 1020, 1169
XceI RCATGY 1 cut(s) 592
XhoI CTCGAG 1 cut(s) 796
XmaJI CCTAGG 1 cut(s) 782
XmnI GAANNNNTTC 3 cut(s) 347, 375, 638
XspI CTAG 2 cut(s) 11, 783
Zsp2I ATGCAT 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.