Rh6CG263200

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0007087
Physical Location & Seq
Reverse (-)
43620743 .. 43624717
3975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG263200.1

Sequence Viewer

Length: 1230 bp
ATGCCTGCTTGTGTGGACCCAATTGGTATTGCTAGGCTTCCATTGGAGGGTCACAGATGGGTGCATTCGGCTCCGGAGCACAAAGCTGCGGCTCCATTGGAGCGTTCTGGAGAAGGTAAAGTCGATGATGGTGGCGGGGGTAATGCTAAAGTGAAGAGGAAAAAGCTCAAGGGGAAACGAGCTGTGGTTAGGTGGCTCAAGTTCTTCAGGTACAAGAAGAAGAAAGATTTCGAGAGAATGACCGCGGAAGAAAAGATTCTACACAAATTGAGAAAGGCTCAAAGGAAAGAGGAGAGGCTACTGGAAGCTCTTAAGAAGATCGAGCCTTCGGAGTCGGCAGAAACCGCCCATGATCCGGAGATATTGACACCCGAGGAGCACTTCTTCTTTTTGAAGATGGGACTCAAGTGCAAGAATTATGTGCCTGTCGGAAGGCGGGGGATATACCAGGGTGTGATTCTGAACATGCATTTGCATTGGAAGAAACATCAAACGCTGCAGGTGATAGTCAAGACATTCTCACCTGAGGAGGTTAAGGATATTGCTTCTGAGCTGGCGAGGTTGACAGGAGGGATTGTGCTCGGAATTCATGAGGAGTACACGATTATTATGTATAGAGGGAAGAACTATTCGCAGCCGCCAACAGAGATTATGTCACCTAGGATCACTCTCTCGAGGAAGAAGGCTTTGGATAAATCAAAGTATATGGATGGCCTTCGAGCAGTAAGGAAGCACATTCCGAAGCTGGAACAGGACCTTGAGTTGCTTAGAGCACAGGCTAAAAGAAAAGTTGAATTTAGTTCTGATGCTATTGAAGAAACTCCAGAAGTTATTGAGAGTGTAGAGTCTGAGAGCTCCTCAAACTTAAAGCTGGAGCCTTCAGATAAGCTCAAAGAAATTTTGGATAGAAGAAAGGAGAGCCCTGAGGATGACCTTGTAACAGATGGAGATATGGCTTCGGACTCGGAAGATTTATCAGATATTTTTGAGACCGACTCTGACAAGGAGACTGAGAACAAAGCGCAACGACCTCTGTATTTGGAGGAATTTGAGAAGTTCCCAGTTGAAAGCGATGGAGAGCCTGATGATTTTGAGGATCATCTGCGTCAAATATCCATGGACTCAAAGAAGGCTAAATCACTGAACGAAGAAGATGCTGGCTTGCCAAACTTTGATGAGGTTGATAGGATATTTCTGCGTGCTGCTTCACTGTTGAAGAAAAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CRS1_YhbY EF-hand_1 EF-hand_5

Protein Analysis

409

Amino Acids

46.94

Weight (kDa)

6.9

Isoelectric Point (pI)

61.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 122 - 206 6.7e-15 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 490
Acc36I ACCTGC 1 cut(s) 490
AccII CGCG 1 cut(s) 245
AccIII TCCGGA 2 cut(s) 73, 355
AciI CCGC 7 cut(s) 89, 135, 243, 245, 345, 436, 638
AclWI GGATC 3 cut(s) 347, 671, 1104
AcsI RAATTY 4 cut(s) 585, 794, 897, 1046
AcuI CTGAAG 2 cut(s) 190, 864
AfaI GTAC 2 cut(s) 212, 599
AfiI CCNNNNNNNGG 2 cut(s) 47, 355
AflII CTTAAG 1 cut(s) 311
AgsI TTSAA 5 cut(s) 394, 794, 815, 1067, 1216
AjnI CCWGG 1 cut(s) 447
AjuI GAANNNNNNNTTGG 2 cut(s) 671, 703
AluBI AGCT 9 cut(s) 86, 166, 182, 308, 553, 745, 855, 871, 889
AluI AGCT 9 cut(s) 86, 166, 182, 308, 553, 745, 855, 871, 889
Alw21I GWGCWC 5 cut(s) 81, 381, 582, 775, 857
Alw26I GTCTC 2 cut(s) 983, 1001
AlwI GGATC 3 cut(s) 347, 671, 1104
Ama87I CYCGRG 2 cut(s) 371, 673
Aor13HI TCCGGA 2 cut(s) 73, 355
AoxI GGCC 1 cut(s) 712
ApeKI GCWGC 4 cut(s) 86, 496, 634, 1202
ApoI RAATTY 4 cut(s) 585, 794, 897, 1046
Asp700I GAANNNNTTC 2 cut(s) 227, 255
AspA2I CCTAGG 1 cut(s) 659
AspLEI GCGC 1 cut(s) 1024
AspS9I GGNCC 2 cut(s) 16, 754
AsuHPI GGTGA 3 cut(s) 513, 514, 648
AvaI CYCGRG 2 cut(s) 371, 673
AvaII GGWCC 2 cut(s) 16, 754
AvrII CCTAGG 1 cut(s) 659
AxyI CCTNAGG 2 cut(s) 525, 924
BanII GRGCYC 2 cut(s) 857, 923
Bbv12I GWGCWC 5 cut(s) 81, 381, 582, 775, 857
BbvI GCAGC 4 cut(s) 73, 483, 646, 1189
BccI CCATC 6 cut(s) 51, 122, 391, 704, 938, 1067
BcgI CGANNNNNNTGC 2 cut(s) 1136, 1170
BciT130I CCWGG 1 cut(s) 449
BcoDI GTCTC 2 cut(s) 983, 1001
BfaI CTAG 2 cut(s) 33, 660
BfmI CTRYAG 1 cut(s) 497
BfrI CTTAAG 1 cut(s) 311
BfuAI ACCTGC 1 cut(s) 490
BisI GCNGC 6 cut(s) 87, 90, 497, 635, 638, 1203
BlnI CCTAGG 1 cut(s) 659
BlsI GCNGC 6 cut(s) 88, 91, 498, 636, 639, 1204
Bme1390I CCNGG 1 cut(s) 449
Bme18I GGWCC 2 cut(s) 16, 754
BmeT110I CYCGRG 2 cut(s) 371, 673
BmgT120I GGNCC 2 cut(s) 16, 754
BmiI GGNNCC 4 cut(s) 18, 72, 93, 876
BmrFI CCNGG 1 cut(s) 449
BmrI ACTGGG 1 cut(s) 1055
BmsI GCATC 2 cut(s) 796, 1144
BmuI ACTGGG 1 cut(s) 1055
BplI GAGNNNNNCTC 6 cut(s) 262, 294, 842, 874, 980, 1012
BpmI CTGGAG 3 cut(s) 129, 807, 893
BpuEI CTTGAG 4 cut(s) 152, 182, 389, 779
BsaI GGTCTC 1 cut(s) 983
BsaJI CCNNGG 5 cut(s) 243, 372, 448, 659, 1116
BsaWI WCCGGW 2 cut(s) 73, 355
BsaXI ACNNNNNCTCC 2 cut(s) 561, 591
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 355
Bse1I ACTGG 2 cut(s) 306, 1061
Bse21I CCTNAGG 2 cut(s) 525, 924
BseAI TCCGGA 2 cut(s) 73, 355
BseBI CCWGG 1 cut(s) 449
BseDI CCNNGG 5 cut(s) 243, 372, 448, 659, 1116
BseGI GGATG 2 cut(s) 715, 934
BseLI CCNNNNNNNGG 2 cut(s) 47, 355
BseMII CTCAG 5 cut(s) 516, 540, 840, 915, 1002
BseNI ACTGG 2 cut(s) 306, 1061
BseRI GAGGAG 5 cut(s) 305, 389, 542, 608, 847
BseXI GCAGC 4 cut(s) 73, 483, 646, 1189
Bsh1236I CGCG 1 cut(s) 245
BshFI GGCC 1 cut(s) 714
BsiHKAI GWGCWC 5 cut(s) 81, 381, 582, 775, 857
BsiHKCI CYCGRG 2 cut(s) 371, 673
BsiSI CCGG 2 cut(s) 74, 356
BslFI GGGAC 1 cut(s) 414
BslI CCNNNNNNNGG 2 cut(s) 47, 355
BsmAI GTCTC 2 cut(s) 983, 1001
BsmFI GGGAC 1 cut(s) 414
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 1 cut(s) 714
Bso31I GGTCTC 1 cut(s) 983
BsoBI CYCGRG 2 cut(s) 371, 673
Bsp1286I GDGCHC 6 cut(s) 81, 381, 582, 775, 857, 923
Bsp13I TCCGGA 2 cut(s) 73, 355
Bsp143I GATC 4 cut(s) 318, 352, 663, 1096
Bsp19I CCATGG 1 cut(s) 1116
BspACI CCGC 7 cut(s) 89, 135, 243, 245, 345, 436, 638
BspANI GGCC 1 cut(s) 714
BspCNI CTCAG 5 cut(s) 517, 541, 841, 916, 1003
BspEI TCCGGA 2 cut(s) 73, 355
BspFNI CGCG 1 cut(s) 245
BspHI TCATGA 1 cut(s) 589
BspLI GGNNCC 4 cut(s) 18, 72, 93, 876
BspMAI CTGCAG 1 cut(s) 501
BspMI ACCTGC 1 cut(s) 490
BspPI GGATC 3 cut(s) 347, 671, 1104
BspTI CTTAAG 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 983
BsrI ACTGG 2 cut(s) 306, 1061
BssECI CCNNGG 5 cut(s) 243, 372, 448, 659, 1116
BssMI GATC 4 cut(s) 318, 352, 663, 1096
BssT1I CCWWGG 2 cut(s) 659, 1116
Bst2UI CCWGG 1 cut(s) 449
Bst4CI ACNGT 1 cut(s) 1212
Bst6I CTCTTC 1 cut(s) 149
BstAFI CTTAAG 1 cut(s) 311
BstC8I GCNNGC 5 cut(s) 6, 555, 1159, 1163, 1200
BstDEI CTNAG 6 cut(s) 525, 549, 767, 849, 924, 1011
BstDSI CCRYGG 2 cut(s) 243, 1116
BstF5I GGATG 2 cut(s) 715, 934
BstFNI CGCG 1 cut(s) 245
BstHHI GCGC 1 cut(s) 1024
BstKTI GATC 4 cut(s) 321, 355, 666, 1099
BstMAI GTCTC 2 cut(s) 983, 1001
BstMBI GATC 4 cut(s) 318, 352, 663, 1096
BstMWI GCNNNNNNNGC 1 cut(s) 344
BstNI CCWGG 1 cut(s) 449
BstNSI RCATGY 1 cut(s) 469
BstSCI CCNGG 1 cut(s) 447
BstSFI CTRYAG 1 cut(s) 497
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 4 cut(s) 73, 483, 646, 1189
Bsu36I CCTNAGG 2 cut(s) 525, 924
BsuRI GGCC 1 cut(s) 714
BtgI CCRYGG 2 cut(s) 243, 1116
BtgZI GCGATG 1 cut(s) 1086
BtsCI GGATG 2 cut(s) 715, 934
BtsIMutI CAGTG 2 cut(s) 1139, 1208
BveI ACCTGC 1 cut(s) 490
Cac8I GCNNGC 5 cut(s) 6, 555, 1159, 1163, 1200
CciI TCATGA 1 cut(s) 589
CfoI GCGC 1 cut(s) 1024
Cfr13I GGNCC 2 cut(s) 16, 754
Cfr42I CCGCGG 1 cut(s) 246
CseI GACGC 1 cut(s) 1094
Csp6I GTAC 2 cut(s) 211, 598
CviAII CATG 4 cut(s) 350, 466, 590, 1117
CviQI GTAC 2 cut(s) 211, 598
DdeI CTNAG 6 cut(s) 525, 549, 767, 849, 924, 1011
DpnI GATC 4 cut(s) 320, 354, 665, 1098
DpnII GATC 4 cut(s) 318, 352, 663, 1096
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Ecl136II GAGCTC 1 cut(s) 855
Eco130I CCWWGG 2 cut(s) 659, 1116
Eco24I GRGCYC 2 cut(s) 857, 923
Eco31I GGTCTC 1 cut(s) 983
Eco47I GGWCC 2 cut(s) 16, 754
Eco53kI GAGCTC 1 cut(s) 855
Eco57I CTGAAG 2 cut(s) 190, 864
Eco81I CCTNAGG 2 cut(s) 525, 924
Eco88I CYCGRG 2 cut(s) 371, 673
EcoICRI GAGCTC 1 cut(s) 855
EcoO109I RGGNCCY 1 cut(s) 754
EcoRI GAATTC 1 cut(s) 585
EcoRII CCWGG 1 cut(s) 447
EcoT14I CCWWGG 2 cut(s) 659, 1116
EcoT22I ATGCAT 1 cut(s) 471
EcoT38I GRGCYC 2 cut(s) 857, 923
ErhI CCWWGG 2 cut(s) 659, 1116
FaeI CATG 4 cut(s) 353, 469, 593, 1120
FaqI GGGAC 1 cut(s) 414
FatI CATG 4 cut(s) 349, 465, 589, 1116
FauI CCCGC 2 cut(s) 128, 429
Fnu4HI GCNGC 6 cut(s) 87, 90, 497, 635, 638, 1203
FokI GGATG 2 cut(s) 722, 941
FriOI GRGCYC 2 cut(s) 857, 923
Fsp4HI GCNGC 6 cut(s) 87, 90, 497, 635, 638, 1203
FspBI CTAG 2 cut(s) 33, 660
GlaI GCGC 1 cut(s) 1023
GluI GCNGC 6 cut(s) 87, 90, 497, 635, 638, 1203
GsuI CTGGAG 3 cut(s) 129, 807, 893
HaeIII GGCC 1 cut(s) 714
HapII CCGG 2 cut(s) 74, 356
HgaI GACGC 1 cut(s) 1094
HhaI GCGC 1 cut(s) 1024
Hin1II CATG 4 cut(s) 353, 469, 593, 1120
Hin6I GCGC 1 cut(s) 1022
HinP1I GCGC 1 cut(s) 1022
HincII GTYRAC 1 cut(s) 564
HindII GTYRAC 1 cut(s) 564
HinfI GANTC 8 cut(s) 256, 332, 402, 457, 845, 962, 995, 1121
HpaII CCGG 2 cut(s) 74, 356
HphI GGTGA 3 cut(s) 513, 514, 648
Hpy166II GTNNAC 3 cut(s) 16, 564, 600
Hpy188III TCNNGA 8 cut(s) 74, 108, 232, 356, 511, 590, 673, 824
Hpy8I GTNNAC 3 cut(s) 16, 564, 600
HpyAV CCTTC 7 cut(s) 107, 336, 426, 676, 725, 888, 1123
HpyCH4III ACNGT 1 cut(s) 1212
HpyCH4V TGCA 5 cut(s) 64, 411, 469, 475, 499
HpyF10VI GCNNNNNNNGC 1 cut(s) 344
HpyF3I CTNAG 6 cut(s) 525, 549, 767, 849, 924, 1011
Hsp92II CATG 4 cut(s) 353, 469, 593, 1120
HspAI GCGC 1 cut(s) 1022
Kpn2I TCCGGA 2 cut(s) 73, 355
KspI CCGCGG 1 cut(s) 246
Kzo9I GATC 4 cut(s) 318, 352, 663, 1096
LmnI GCTCC 7 cut(s) 76, 76, 97, 100, 376, 860, 874
Lsp1109I GCAGC 4 cut(s) 73, 483, 646, 1189
LweI GCATC 2 cut(s) 796, 1144
MaeI CTAG 2 cut(s) 33, 660
MaeIII GTNAC 3 cut(s) 50, 654, 937
MalI GATC 4 cut(s) 320, 354, 665, 1098
MboI GATC 4 cut(s) 318, 352, 663, 1096
MfeI CAATTG 1 cut(s) 21
MhlI GDGCHC 6 cut(s) 81, 381, 582, 775, 857, 923
MluCI AATT 7 cut(s) 21, 266, 415, 585, 794, 897, 1046
MlyI GAGTC 6 cut(s) 341, 396, 854, 956, 989, 1115
MmeI TCCRAC 1 cut(s) 409
Mph1103I ATGCAT 1 cut(s) 471
MroI TCCGGA 2 cut(s) 73, 355
MroXI GAANNNNTTC 2 cut(s) 227, 255
MseI TTAA 3 cut(s) 312, 534, 866
MspA1I CMGCKG 1 cut(s) 245
MspCI CTTAAG 1 cut(s) 311
MspI CCGG 2 cut(s) 74, 356
MspR9I CCNGG 1 cut(s) 449
MunI CAATTG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 1 cut(s) 449
MvnI CGCG 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 344
NcoI CCATGG 1 cut(s) 1116
NdeII GATC 4 cut(s) 318, 352, 663, 1096
NlaIII CATG 4 cut(s) 353, 469, 593, 1120
NlaIV GGNNCC 4 cut(s) 18, 72, 93, 876
NmuCI GTSAC 2 cut(s) 50, 654
NsiI ATGCAT 1 cut(s) 471
NspI RCATGY 1 cut(s) 469
PaeR7I CTCGAG 1 cut(s) 673
PagI TCATGA 1 cut(s) 589
PaqCI CACCTGC 1 cut(s) 490
PctI GAATGC 1 cut(s) 64
PdmI GAANNNNTTC 2 cut(s) 227, 255
PfeI GAWTC 2 cut(s) 256, 457
PkrI GCNGC 6 cut(s) 88, 91, 498, 636, 639, 1204
PleI GAGTC 6 cut(s) 340, 396, 853, 956, 989, 1115
PpsI GAGTC 6 cut(s) 340, 396, 853, 956, 989, 1115
PpuMI RGGWCCY 1 cut(s) 754
Psp124BI GAGCTC 1 cut(s) 857
Psp5II RGGWCCY 1 cut(s) 754
Psp6I CCWGG 1 cut(s) 447
PspGI CCWGG 1 cut(s) 447
PspN4I GGNNCC 4 cut(s) 18, 72, 93, 876
PspPI GGNCC 2 cut(s) 16, 754
PspPPI RGGWCCY 1 cut(s) 754
PstI CTGCAG 1 cut(s) 501
RsaI GTAC 2 cut(s) 212, 599
RsaNI GTAC 2 cut(s) 211, 598
SacI GAGCTC 1 cut(s) 857
SacII CCGCGG 1 cut(s) 246
SaqAI TTAA 3 cut(s) 312, 534, 866
SatI GCNGC 6 cut(s) 87, 90, 497, 635, 638, 1203
Sau3AI GATC 4 cut(s) 318, 352, 663, 1096
Sau96I GGNCC 2 cut(s) 16, 754
SchI GAGTC 6 cut(s) 341, 396, 854, 956, 989, 1115
ScrFI CCNGG 1 cut(s) 449
SduI GDGCHC 6 cut(s) 81, 381, 582, 775, 857, 923
SfaNI GCATC 2 cut(s) 796, 1144
SfcI CTRYAG 1 cut(s) 497
Sfr274I CTCGAG 1 cut(s) 673
Sfr303I CCGCGG 1 cut(s) 246
SgrBI CCGCGG 1 cut(s) 246
SinI GGWCC 2 cut(s) 16, 754
SlaI CTCGAG 1 cut(s) 673
SmlI CTYRAG 6 cut(s) 167, 197, 311, 404, 673, 758
SmoI CTYRAG 6 cut(s) 167, 197, 311, 404, 673, 758
Sse9I AATT 7 cut(s) 21, 266, 415, 585, 794, 897, 1046
SsiI CCGC 7 cut(s) 89, 135, 243, 245, 345, 436, 638
SspMI CTAG 2 cut(s) 33, 660
SstI GAGCTC 1 cut(s) 857
StyD4I CCNGG 1 cut(s) 447
StyI CCWWGG 2 cut(s) 659, 1116
TaaI ACNGT 1 cut(s) 1212
TaqI TCGA 5 cut(s) 123, 231, 321, 674, 718
TaqII GACCGA 1 cut(s) 1007
TasI AATT 7 cut(s) 21, 266, 415, 585, 794, 897, 1046
TatI WGTACW 1 cut(s) 597
TauI GCSGC 2 cut(s) 92, 640
TfiI GAWTC 2 cut(s) 256, 457
Tru1I TTAA 3 cut(s) 312, 534, 866
Tru9I TTAA 3 cut(s) 312, 534, 866
TscAI CASTG 2 cut(s) 1146, 1215
TseFI GTSAC 2 cut(s) 50, 654
TseI GCWGC 4 cut(s) 86, 496, 634, 1202
Tsp45I GTSAC 2 cut(s) 50, 654
TspDTI ATGAA 1 cut(s) 578
TspRI CASTG 2 cut(s) 1146, 1215
Vha464I CTTAAG 1 cut(s) 311
VpaK11BI GGWCC 2 cut(s) 16, 754
XapI RAATTY 4 cut(s) 585, 794, 897, 1046
XceI RCATGY 1 cut(s) 469
XhoI CTCGAG 1 cut(s) 673
XmaJI CCTAGG 1 cut(s) 659
XmnI GAANNNNTTC 2 cut(s) 227, 255
XspI CTAG 2 cut(s) 33, 660
Zsp2I ATGCAT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.