Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007087

Physical Location & Seq

Genomic Coordinates Reverse (-)

23721095 .. 23722231

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1150200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAAAAACCCGTTCCAGGGGGGGGGAAGGGGGAACCAAAATCTAACCCATTTTCGTTCCGTGGAACGCGCGTTCCACATAATTTTAGCGCACCAAACGTGGGACGGAACGGTTCCGTCCCACTCTGTTCCGTCCCATCCCACGTACCAAACGCACCCCAAAGGAAAGAGGAAAGGCTTGTTGAAGCTCTTAAGAAAATTGAGCCCTCGGAGCCATCGGAGGCAAACCATGATCCAGAAATATTGACGCCAGAGGAACACTTCTTCTTTCTTAAGATGGGTCTCAAGTGCAAGAATTATGTGCCCGTTGGAAGACGGGATACCAGGGTTGTGGTGAAAACATTCTCACCTGAGGAGGTTAAGGAGATTGCTTCTGAGCTGGCTAGATTAACCGGAGGGATTGTGCTCGGCATTCATGAAGAATACACGATAATTATGTATAGAGGGAAGAACTATTATCAGCCTCCAACAGAAATCATGTCACCTAGGATCACTCTCTCCAGGAAGAAGGCTTTAGATAAATCGAAGTACAAGGATGGTCTTCGTGCCGTAAGAAAGTATATCCCAAAACTTGAACAAGAACTTGAATTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CRS1_YhbY EF-hand_1 EF-hand_5

Protein Analysis

199

Amino Acids

22.38

Weight (kDa)

9.43

Isoelectric Point (pI)

56.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25440 AT3G25440 AT3G25440 AT3G25440 AT3G25440
fragaria_vesca	FvH4_2g17610 FvH4_2g17610 FvH4_2g17610
malus_domestica	MD05G1156500.v1.1 MD10G1150100.v1.1 MD10G1150200.v1.1 MD10G1150300.v1.1
prunus_persica	Prupe.8G188700_v2.0.a1
pyrus_communis	pycom05g14900 pycom10g12950
rosa_chinensis	RchiOBHm_Chr6g0282591
rosa_laevigata	RLG00000012883
rosa_multiflora	Rmu_co8290349.1_g000001 Rmu_sc0000283.1_g000003 Rmu_sc0005697.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186240
rosa_rugosa	Rorug06G0147900
rosa_samantha	Rh6CG263200 Rh6DG255300
rosa_wichuraiana	Rw6G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	70, 72
AclWI	GGATC	2 cut(s)	227, 497
AcyI	GRCGYC	1 cut(s)	248
AfaI	GTAC	2 cut(s)	147, 530
AfiI	CCNNNNNNNGG	4 cut(s)	17, 18, 23, 101
AflII	CTTAAG	2 cut(s)	191, 272
AgsI	TTSAA	3 cut(s)	185, 575, 587
AjnI	CCWGG	3 cut(s)	16, 323, 500
AloI	GAACNNNNNNTCC	4 cut(s)	57, 58, 89, 90
AluBI	AGCT	2 cut(s)	188, 379
AluI	AGCT	2 cut(s)	188, 379
Alw21I	GWGCWC	1 cut(s)	408
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	2 cut(s)	227, 497
Asp700I	GAANNNNTTC	1 cut(s)	341
AspA2I	CCTAGG	1 cut(s)	485
AspLEI	GCGC	2 cut(s)	72, 92
AsuHPI	GGTGA	3 cut(s)	339, 346, 474
AvrII	CCTAGG	1 cut(s)	485
AxyI	CCTNAGG	1 cut(s)	351
BaeGI	GKGCMC	1 cut(s)	306
BaeI	ACNNNNGTAYC	2 cut(s)	312, 345
BanII	GRGCYC	1 cut(s)	207
BarI	GAAGNNNNNNTAC	2 cut(s)	304, 336
BbsI	GAAGAC	2 cut(s)	319, 533
Bbv12I	GWGCWC	1 cut(s)	408
BccI	CCATC	4 cut(s)	145, 223, 271, 530
BceAI	ACGGC	1 cut(s)	533
BciT130I	CCWGG	3 cut(s)	18, 325, 502
BciVI	GTATCC	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	2 cut(s)	384, 486
BfrI	CTTAAG	2 cut(s)	191, 272
BfuI	GTATCC	1 cut(s)	313
BlnI	CCTAGG	1 cut(s)	485
Bme1390I	CCNGG	3 cut(s)	18, 325, 502
BmiI	GGNNCC	3 cut(s)	36, 115, 213
BmrFI	CCNGG	3 cut(s)	18, 325, 502
BpiI	GAAGAC	2 cut(s)	319, 533
BpmI	CTGGAG	1 cut(s)	484
BpuEI	CTTGAG	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	145
BsaHI	GRCGYC	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	5 cut(s)	17, 61, 207, 324, 485
BsaWI	WCCGGW	1 cut(s)	392
BsaXI	ACNNNNNCTCC	2 cut(s)	387, 417
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 18, 23, 101
Bse21I	CCTNAGG	1 cut(s)	351
BseBI	CCWGG	3 cut(s)	18, 325, 502
BseDI	CCNNGG	5 cut(s)	17, 61, 207, 324, 485
BseGI	GGATG	2 cut(s)	137, 541
BseLI	CCNNNNNNNGG	4 cut(s)	17, 18, 23, 101
BseMII	CTCAG	2 cut(s)	342, 366
BseRI	GAGGAG	1 cut(s)	368
BseSI	GKGCMC	1 cut(s)	306
Bsh1236I	CGCG	2 cut(s)	70, 72
BsiHKAI	GWGCWC	1 cut(s)	408
BsiSI	CCGG	1 cut(s)	393
BslFI	GGGAC	3 cut(s)	104, 117, 119
BslI	CCNNNNNNNGG	4 cut(s)	17, 18, 23, 101
BsmAI	GTCTC	1 cut(s)	287
BsmFI	GGGAC	3 cut(s)	104, 117, 119
BsmI	GAATGC	1 cut(s)	411
Bso31I	GGTCTC	1 cut(s)	287
Bsp1286I	GDGCHC	3 cut(s)	207, 306, 408
Bsp143I	GATC	2 cut(s)	232, 489
BspCNI	CTCAG	2 cut(s)	343, 367
BspFNI	CGCG	2 cut(s)	70, 72
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	3 cut(s)	36, 115, 213
BspPI	GGATC	2 cut(s)	227, 497
BspTI	CTTAAG	2 cut(s)	191, 272
BspTNI	GGTCTC	1 cut(s)	287
BssECI	CCNNGG	5 cut(s)	17, 61, 207, 324, 485
BssMI	GATC	2 cut(s)	232, 489
BssNI	GRCGYC	1 cut(s)	248
BssT1I	CCWWGG	1 cut(s)	485
Bst2UI	CCWGG	3 cut(s)	18, 325, 502
Bst4CI	ACNGT	1 cut(s)	113
BstACI	GRCGYC	1 cut(s)	248
BstAFI	CTTAAG	2 cut(s)	191, 272
BstBAI	YACGTR	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	2 cut(s)	351, 375
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	2 cut(s)	137, 541
BstFNI	CGCG	2 cut(s)	70, 72
BstHHI	GCGC	2 cut(s)	72, 92
BstKTI	GATC	2 cut(s)	235, 492
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	2 cut(s)	232, 489
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNI	CCWGG	3 cut(s)	18, 325, 502
BstSCI	CCNGG	3 cut(s)	16, 323, 500
BstSLI	GKGCMC	1 cut(s)	306
BstUI	CGCG	2 cut(s)	70, 72
BstV2I	GAAGAC	2 cut(s)	319, 533
BstXI	CCANNNNNNTGG	1 cut(s)	331
Bsu36I	CCTNAGG	1 cut(s)	351
BsuI	GTATCC	1 cut(s)	313
BtgI	CCRYGG	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	137, 541
Cac8I	GCNNGC	1 cut(s)	381
CciI	TCATGA	1 cut(s)	415
CfoI	GCGC	2 cut(s)	72, 92
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	2 cut(s)	146, 529
CviAII	CATG	3 cut(s)	230, 416, 478
CviJI	RGCY	8 cut(s)	178, 188, 205, 214, 379, 383, 463, 512
CviKI_1	RGCY	8 cut(s)	178, 188, 205, 214, 379, 383, 463, 512
CviQI	GTAC	2 cut(s)	146, 529
DdeI	CTNAG	2 cut(s)	351, 375
DpnI	GATC	2 cut(s)	234, 491
DpnII	GATC	2 cut(s)	232, 489
Eco130I	CCWWGG	1 cut(s)	485
Eco24I	GRGCYC	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	287
Eco81I	CCTNAGG	1 cut(s)	351
EcoRII	CCWGG	3 cut(s)	16, 323, 500
EcoT14I	CCWWGG	1 cut(s)	485
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	485
FaeI	CATG	3 cut(s)	233, 419, 481
FaiI	YATR	8 cut(s)	81, 231, 300, 417, 437, 441, 479, 561
FaqI	GGGAC	3 cut(s)	104, 117, 119
FatI	CATG	3 cut(s)	229, 415, 477
FokI	GGATG	2 cut(s)	124, 548
FriOI	GRGCYC	1 cut(s)	207
FspBI	CTAG	2 cut(s)	384, 486
GlaI	GCGC	2 cut(s)	71, 91
GsuI	CTGGAG	1 cut(s)	484
HapII	CCGG	1 cut(s)	393
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	2 cut(s)	72, 92
Hin1I	GRCGYC	1 cut(s)	248
Hin1II	CATG	3 cut(s)	233, 419, 481
Hin6I	GCGC	2 cut(s)	70, 90
HinP1I	GCGC	2 cut(s)	70, 90
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	3 cut(s)	339, 346, 474
Hpy188I	TCNGA	3 cut(s)	211, 220, 376
Hpy188III	TCNNGA	2 cut(s)	236, 416
HpyAV	CCTTC	2 cut(s)	22, 502
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4IV	ACGT	2 cut(s)	99, 144
HpyCH4V	TGCA	1 cut(s)	291
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	2 cut(s)	351, 375
HpySE526I	ACGT	2 cut(s)	99, 144
Hsp92I	GRCGYC	1 cut(s)	248
Hsp92II	CATG	3 cut(s)	233, 419, 481
HspAI	GCGC	2 cut(s)	70, 90
Kzo9I	GATC	2 cut(s)	232, 489
LmnI	GCTCC	1 cut(s)	211
MaeI	CTAG	2 cut(s)	384, 486
MaeII	ACGT	2 cut(s)	99, 144
MaeIII	GTNAC	1 cut(s)	480
MalI	GATC	2 cut(s)	234, 491
MboI	GATC	2 cut(s)	232, 489
MboII	GAAGA	6 cut(s)	256, 324, 431, 460, 517, 533
MhlI	GDGCHC	3 cut(s)	207, 306, 408
MluCI	AATT	5 cut(s)	82, 198, 295, 432, 587
MmeI	TCCRAC	2 cut(s)	289, 491
MnlI	CCTC	9 cut(s)	163, 214, 217, 247, 346, 349, 389, 437, 474
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	4 cut(s)	192, 273, 360, 389
MspCI	CTTAAG	2 cut(s)	191, 272
MspI	CCGG	1 cut(s)	393
MspR9I	CCNGG	3 cut(s)	18, 325, 502
Mva1269I	GAATGC	1 cut(s)	411
MvaI	CCWGG	3 cut(s)	18, 325, 502
MvnI	CGCG	2 cut(s)	70, 72
MwoI	GCNNNNNNNGC	1 cut(s)	211
NdeII	GATC	2 cut(s)	232, 489
NlaIII	CATG	3 cut(s)	233, 419, 481
NlaIV	GGNNCC	3 cut(s)	36, 115, 213
NmeAIII	GCCGAG	1 cut(s)	387
NmuCI	GTSAC	1 cut(s)	480
PagI	TCATGA	1 cut(s)	415
PctI	GAATGC	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	341
PfoI	TCCNGGA	1 cut(s)	500
Ppu21I	YACGTR	1 cut(s)	145
Psp6I	CCWGG	3 cut(s)	16, 323, 500
PspGI	CCWGG	3 cut(s)	16, 323, 500
PspN4I	GGNNCC	3 cut(s)	36, 115, 213
RsaI	GTAC	2 cut(s)	147, 530
RsaNI	GTAC	2 cut(s)	146, 529
SaqAI	TTAA	4 cut(s)	192, 273, 360, 389
Sau3AI	GATC	2 cut(s)	232, 489
ScrFI	CCNGG	3 cut(s)	18, 325, 502
SduI	GDGCHC	3 cut(s)	207, 306, 408
SetI	ASST	7 cut(s)	102, 147, 190, 352, 360, 381, 487
SmlI	CTYRAG	3 cut(s)	191, 272, 284
SmoI	CTYRAG	3 cut(s)	191, 272, 284
Sse9I	AATT	5 cut(s)	82, 198, 295, 432, 587
SspI	AATATT	1 cut(s)	243
SspMI	CTAG	2 cut(s)	384, 486
StyD4I	CCNGG	3 cut(s)	16, 323, 500
StyI	CCWWGG	1 cut(s)	485
TaaI	ACNGT	1 cut(s)	113
TaiI	ACGT	2 cut(s)	102, 147
TaqI	TCGA	1 cut(s)	524
TasI	AATT	5 cut(s)	82, 198, 295, 432, 587
TatI	WGTACW	1 cut(s)	528
Tru1I	TTAA	4 cut(s)	192, 273, 360, 389
Tru9I	TTAA	4 cut(s)	192, 273, 360, 389
TseFI	GTSAC	1 cut(s)	480
Tsp45I	GTSAC	1 cut(s)	480
TspDTI	ATGAA	2 cut(s)	404, 432
TspGWI	ACGGA	4 cut(s)	50, 106, 121, 121
Vha464I	CTTAAG	2 cut(s)	191, 272
XmaJI	CCTAGG	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	2 cut(s)	384, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.