Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8290349.1

Orthogroup ID

OG0007087

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 477

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8290349.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgactctttcttgttccccgcgtcttctcaaaccccataatcacctcaagattctcaaaagcagtagcttgggtggtgttgtatgcaaggtgttcgacgaaatgcctgcttgtgcggacccaattggtattgcaaggcttccattggagggtcacagatgggtgcattcggccccggagcacaaagctgcggcgccattggagcgttctggagaaggtaaagtcgatgatggtggcggtggtaatgctaaagtgaagaggaaaaagctcaaggggaaacgagctgtggttaggtggctcaagttcttcaggtacaagaagaagaaagatttcgagagaatgaccgcggaagaaaagattctacacaaattgagaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CRS1_YhbY EF-hand_1 EF-hand_5

Protein Analysis

126

Amino Acids

14.18

Weight (kDa)

10.21

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25440 AT3G25440 AT3G25440 AT3G25440 AT3G25440
fragaria_vesca	FvH4_2g17610 FvH4_2g17610 FvH4_2g17610
malus_domestica	MD05G1156500.v1.1 MD10G1150100.v1.1 MD10G1150200.v1.1 MD10G1150300.v1.1
prunus_persica	Prupe.8G188700_v2.0.a1
pyrus_communis	pycom05g14900 pycom10g12950
rosa_chinensis	RchiOBHm_Chr6g0282591
rosa_laevigata	RLG00000012883
rosa_multiflora	Rmu_co8290349.1_g000001 Rmu_sc0000283.1_g000003 Rmu_sc0005697.1_g000004
rosa_roxburghii	Rroxscaffold_7G00186240
rosa_rugosa	Rorug06G0147900
rosa_samantha	Rh6CG263200 Rh6DG255300
rosa_wichuraiana	Rw6G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	193
AccII	CGCG	2 cut(s)	22, 347
AciI	CCGC	6 cut(s)	20, 116, 191, 237, 345, 347
AcuI	CTGAAG	1 cut(s)	292
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	149
AluBI	AGCT	4 cut(s)	69, 188, 268, 284
AluI	AGCT	4 cut(s)	69, 188, 268, 284
Alw21I	GWGCWC	1 cut(s)	183
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	188
Asp700I	GAANNNNTTC	2 cut(s)	329, 357
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	2 cut(s)	118, 172
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	2 cut(s)	153, 224
BcgI	CGANNNNNNTGC	4 cut(s)	76, 89, 110, 123
BcnI	CCSGG	1 cut(s)	176
BfoI	RGCGCY	1 cut(s)	197
BisI	GCNGC	2 cut(s)	189, 192
BlsI	GCNGC	2 cut(s)	190, 193
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	118, 172
BmiI	GGNNCC	3 cut(s)	120, 174, 195
BmrFI	CCNGG	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	231
BpuEI	CTTGAG	3 cut(s)	32, 254, 284
BpuMI	CCSGG	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	174, 345
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
BseDI	CCNNGG	2 cut(s)	174, 345
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	175
Bsh1236I	CGCG	2 cut(s)	22, 347
BshFI	GGCC	1 cut(s)	173
BshNI	GGYRCC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	183
BspACI	CCGC	6 cut(s)	20, 116, 191, 237, 345, 347
BspANI	GGCC	1 cut(s)	173
BspFNI	CGCG	2 cut(s)	22, 347
BspLI	GGNNCC	3 cut(s)	120, 174, 195
BspT107I	GGYRCC	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	174, 345
BssNI	GRCGYC	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	251
BstACI	GRCGYC	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	108
BstDSI	CCRYGG	1 cut(s)	345
BstFNI	CGCG	2 cut(s)	22, 347
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	174
BstUI	CGCG	2 cut(s)	22, 347
BstV1I	GCAGC	1 cut(s)	175
BstV2I	GAAGAC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	173
BtgI	CCRYGG	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	108
CfoI	GCGC	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	118, 172
Cfr42I	CCGCGG	1 cut(s)	348
CseI	GACGC	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	313
CviJI	RGCY	7 cut(s)	69, 139, 173, 188, 268, 284, 298
CviKI_1	RGCY	7 cut(s)	69, 139, 173, 188, 268, 284, 298
CviQI	GTAC	1 cut(s)	313
DinI	GGCGCC	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	292
EgeI	GGCGCC	1 cut(s)	195
EheI	GGCGCC	1 cut(s)	195
FaiI	YATR	2 cut(s)	39, 85
FauI	CCCGC	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	189, 192
Fsp4HI	GCNGC	2 cut(s)	189, 192
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	2 cut(s)	189, 192
GsuI	CTGGAG	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	1 cut(s)	176
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	194
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HinfI	GANTC	3 cut(s)	4, 52, 358
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	1 cut(s)	35
Hpy188III	TCNNGA	3 cut(s)	49, 210, 334
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	209
HpyCH4V	TGCA	3 cut(s)	87, 134, 166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	202
Hsp92I	GRCGYC	1 cut(s)	194
HspAI	GCGC	1 cut(s)	194
KasI	GGCGCC	1 cut(s)	193
KspI	CCGCGG	1 cut(s)	348
LmnI	GCTCC	2 cut(s)	178, 202
LpnPI	CCDG	4 cut(s)	120, 189, 195, 295
Lsp1109I	GCAGC	1 cut(s)	175
MaeIII	GTNAC	1 cut(s)	152
MboII	GAAGA	6 cut(s)	17, 268, 298, 331, 334, 362
MfeI	CAATTG	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	2 cut(s)	123, 368
Mly113I	GGCGCC	1 cut(s)	194
MnlI	CCTC	3 cut(s)	56, 142, 252
MroXI	GAANNNNTTC	2 cut(s)	329, 357
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	176
MunI	CAATTG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	166
MvnI	CGCG	2 cut(s)	22, 347
MwoI	GCNNNNNNNGC	1 cut(s)	202
NarI	GGCGCC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	176
NlaIV	GGNNCC	3 cut(s)	120, 174, 195
NmuCI	GTSAC	1 cut(s)	152
PctI	GAATGC	1 cut(s)	166
PdmI	GAANNNNTTC	2 cut(s)	329, 357
PfeI	GAWTC	2 cut(s)	52, 358
PkrI	GCNGC	2 cut(s)	190, 193
PluTI	GGCGCC	1 cut(s)	197
PspN4I	GGNNCC	3 cut(s)	120, 174, 195
PspPI	GGNCC	2 cut(s)	118, 172
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SacII	CCGCGG	1 cut(s)	348
SatI	GCNGC	2 cut(s)	189, 192
Sau96I	GGNCC	2 cut(s)	118, 172
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	9 cut(s)	48, 71, 93, 190, 220, 270, 286, 296, 314
SfoI	GGCGCC	1 cut(s)	195
Sfr303I	CCGCGG	1 cut(s)	348
SgrBI	CCGCGG	1 cut(s)	348
SinI	GGWCC	1 cut(s)	118
SmlI	CTYRAG	3 cut(s)	47, 269, 299
SmoI	CTYRAG	3 cut(s)	47, 269, 299
Sse9I	AATT	2 cut(s)	123, 368
SsiI	CCGC	6 cut(s)	20, 116, 191, 237, 345, 347
SspDI	GGCGCC	1 cut(s)	193
StyD4I	CCNGG	1 cut(s)	174
TaqI	TCGA	3 cut(s)	96, 225, 333
TasI	AATT	2 cut(s)	123, 368
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	2 cut(s)	52, 358
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	118
XmnI	GAANNNNTTC	2 cut(s)	329, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.