MD05G1156500.v1.1

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0007087
Physical Location & Seq
Reverse (-)
28629069 .. 28631504
2436 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1156500.v1.1.491

Sequence Viewer

Length: 1368 bp
ATGCAGAAACTGGCGCGGCCGAGCGTTTTCCGGTCACTGCGCCTTCTCAAATCCCACAACCACCCCAAAATATACCGACCCAGTAGCTTGGGTGATGTTGTATGCAAGGTGTTCGATGAAAAGCCTGTGTGGGACGTGGTGGGCATTGCAAGGTTTCCGTTGGAGTGCCAAAAATGGGTTCATTCGGCTCCGTGTGTTAACACAGAACACAAGGCTGTGGAGCCGTTGGAAAATTCAAAAGACGGCGCGGGTGCTGAGGCCACTGGTGATGGTAAAGTGAAGAGGAAAAAGCTCAAGGGAAAAAGGGCAGTGGTTAGGTGGCTCAAGTTCTTCAGGTATAAGAAGAAGAAAGACTATGAGAGAATGACTGCTGAGGAGAAAATTCTCCACAAGTTAAGAAAGGCTCAAAGGAAAGAGGAAAGGCTTGTTGAAGCTCTCAAAAAGATTGAGCCCTCGGAGCCATCGGAGACAAACCATGATCCAGAAATATTGACGCCGGAGGAACACTTCTACTTTCTGAAGATGGGTCTCAAGTGCAAGAACTATGTGCCCGTTGGTAGACGGGGGATATACCAGGGTGTGATTCTGAACATGCACTTGCATTGGAAGAAACATCAAACTCTGCAGGTGGTGGTGAAAACATTCTCACCTGAAGAGGTTAAGGAGATTGCTTCTGAGCTGGCTAGATTAACCGGAGGGATTGTGCTCGGCATTCATGAAGAATACACGATAATTATGTATAGAGGGAAGAACTATTCTCAGCCTCCAACAGAAATCATGTCACCTAGGGTCACTCTCTCCAGGAAGAAGGCTTTGGATAAATCGAAGTATAAGGATGGTCTTCGAGCTGTAAGGAAATATATTCCAAAACTTGAACAAGATCTTGAGTTGCTTCGAGCACAGGCTAAAAGGAAAGTAGACATCAATACAGAGTACATTGAAGAAACGCAAGAAACTGGTACTGAATCTACTGATAGTGCACACTCTGGTAGCTCCTCAAAGTTGAAGCTGGAGGCTTCAAATAAGGTAAAAGAAATGATGGATAGGAGCAAGGAACGCTCTGAGGATGACCTTTCAACAGATGTGGATATAGCTTCAGACTCTGAAGATTTATCTGATATTTTTGATACTGACTCTGAGAAGGAGACCGAGAAGAAGGCAGAGCGACCTCTGTATTTGGAAGAGTTTGAAAAGTTTCCAGTTGAAGGTGATGGCGAACCTGAAGATTTTGAGGATCACCTGCGTCAAATATCTAGGGACGCAAAGAAGGATAAATCCTTGGACGAAGATGCTGGCTTGCCGAATTTTGATGAAGTTGATCGAGTATTTCTGCGTGCTGCTTCACTTTTAAAGAAAAAAAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CRS1_YhbY EF-hand_1 EF-hand_5

Protein Analysis

456

Amino Acids

52.55

Weight (kDa)

8.91

Isoelectric Point (pI)

51.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 164 - 248 3.3e-15 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 616, 1248
Acc36I ACCTGC 2 cut(s) 616, 1248
AccI GTMKAC 2 cut(s) 559, 918
AccII CGCG 2 cut(s) 16, 248
AciI CCGC 2 cut(s) 16, 248
AclWI GGATC 2 cut(s) 473, 1242
AcoI YGGCCR 1 cut(s) 17
AcsI RAATTY 3 cut(s) 232, 381, 1303
AcuI CTGAAG 6 cut(s) 316, 539, 672, 1080, 1125, 1242
AcyI GRCGYC 1 cut(s) 494
AfaI GTAC 2 cut(s) 935, 961
AfiI CCNNNNNNNGG 2 cut(s) 175, 1205
AgsI TTSAA 9 cut(s) 237, 431, 875, 941, 1006, 1020, 1077, 1190, 1205
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 2 cut(s) 573, 800
AjuI GAANNNNNNNTTGG 4 cut(s) 162, 194, 797, 829
AluBI AGCT 8 cut(s) 87, 292, 434, 679, 848, 993, 1009, 1094
AluI AGCT 8 cut(s) 87, 292, 434, 679, 848, 993, 1009, 1094
Alw21I GWGCWC 3 cut(s) 708, 901, 982
Alw26I GTCTC 3 cut(s) 461, 533, 1139
Alw44I GTGCAC 1 cut(s) 978
AlwI GGATC 2 cut(s) 473, 1242
AlwNI CAGNNNCTG 2 cut(s) 10, 1103
AoxI GGCC 2 cut(s) 17, 258
ApaLI GTGCAC 1 cut(s) 978
ApeKI GCWGC 1 cut(s) 1337
ApoI RAATTY 3 cut(s) 232, 381, 1303
Asp700I GAANNNNTTC 2 cut(s) 641, 1194
AspA2I CCTAGG 1 cut(s) 785
AspLEI GCGC 3 cut(s) 16, 42, 248
AsuHPI GGTGA 7 cut(s) 104, 278, 639, 646, 774, 1220, 1229
AvrII CCTAGG 1 cut(s) 785
BaeGI GKGCMC 2 cut(s) 552, 982
BanII GRGCYC 1 cut(s) 453
BbsI GAAGAC 1 cut(s) 833
Bbv12I GWGCWC 3 cut(s) 708, 901, 982
BbvCI CCTCAGC 2 cut(s) 255, 372
BbvI GCAGC 1 cut(s) 1324
BccI CCATC 6 cut(s) 263, 469, 517, 830, 1033, 1205
BceAI ACGGC 2 cut(s) 208, 259
BcgI CGANNNNNNTGC 2 cut(s) 94, 128
BciT130I CCWGG 2 cut(s) 575, 802
BcoDI GTCTC 3 cut(s) 461, 533, 1139
BfaI CTAG 3 cut(s) 684, 786, 1254
BfmI CTRYAG 1 cut(s) 623
BfuAI ACCTGC 2 cut(s) 616, 1248
BglII AGATCT 1 cut(s) 880
BisI GCNGC 2 cut(s) 17, 1338
BlnI CCTAGG 1 cut(s) 785
BlsI GCNGC 2 cut(s) 18, 1339
Bme1390I CCNGG 2 cut(s) 575, 802
BmgBI CACGTC 1 cut(s) 136
BmiI GGNNCC 3 cut(s) 189, 222, 459
BmrFI CCNGG 2 cut(s) 575, 802
BmrI ACTGGG 1 cut(s) 75
BmsI GCATC 1 cut(s) 1279
BmuI ACTGGG 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 833
BpmI CTGGAG 2 cut(s) 784, 1031
Bpu10I CCTNAGC 2 cut(s) 255, 372
BpuEI CTTGAG 4 cut(s) 278, 308, 515, 905
BsaHI GRCGYC 1 cut(s) 494
BsaI GGTCTC 2 cut(s) 533, 1139
BsaJI CCNNGG 4 cut(s) 453, 574, 785, 1278
BsaWI WCCGGW 2 cut(s) 30, 692
BsaXI ACNNNNNCTCC 2 cut(s) 687, 717
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 1205
Bse1I ACTGG 5 cut(s) 15, 81, 268, 961, 1199
Bse3DI GCAATG 1 cut(s) 144
BseBI CCWGG 2 cut(s) 575, 802
BseDI CCNNGG 4 cut(s) 453, 574, 785, 1278
BseGI GGATG 2 cut(s) 841, 1072
BseLI CCNNNNNNNGG 2 cut(s) 175, 1205
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 6 cut(s) 246, 363, 666, 773, 1053, 1128
BseNI ACTGG 5 cut(s) 15, 81, 268, 961, 1199
BseRI GAGGAG 2 cut(s) 389, 985
BseSI GKGCMC 2 cut(s) 552, 982
BseX3I CGGCCG 1 cut(s) 17
BseXI GCAGC 1 cut(s) 1324
Bsh1236I CGCG 2 cut(s) 16, 248
Bsh1285I CGRYCG 1 cut(s) 20
BshFI GGCC 2 cut(s) 19, 260
BsiEI CGRYCG 1 cut(s) 20
BsiHKAI GWGCWC 3 cut(s) 708, 901, 982
BsiSI CCGG 3 cut(s) 31, 497, 693
BslFI GGGAC 2 cut(s) 146, 1271
BslI CCNNNNNNNGG 2 cut(s) 175, 1205
BsmAI GTCTC 3 cut(s) 461, 533, 1139
BsmFI GGGAC 2 cut(s) 146, 1271
BsmI GAATGC 1 cut(s) 711
BsnI GGCC 2 cut(s) 19, 260
Bso31I GGTCTC 2 cut(s) 533, 1139
Bsp1286I GDGCHC 5 cut(s) 453, 552, 708, 901, 982
Bsp143I GATC 4 cut(s) 478, 880, 1234, 1318
BspACI CCGC 2 cut(s) 16, 248
BspANI GGCC 2 cut(s) 19, 260
BspCNI CTCAG 6 cut(s) 247, 364, 667, 772, 1054, 1129
BspFNI CGCG 2 cut(s) 16, 248
BspHI TCATGA 1 cut(s) 715
BspLI GGNNCC 3 cut(s) 189, 222, 459
BspMAI CTGCAG 1 cut(s) 627
BspMI ACCTGC 2 cut(s) 616, 1248
BspPI GGATC 2 cut(s) 473, 1242
BspTNI GGTCTC 2 cut(s) 533, 1139
BsrDI GCAATG 1 cut(s) 144
BsrI ACTGG 5 cut(s) 15, 81, 268, 961, 1199
BssECI CCNNGG 4 cut(s) 453, 574, 785, 1278
BssMI GATC 4 cut(s) 478, 880, 1234, 1318
BssNI GRCGYC 1 cut(s) 494
BssT1I CCWWGG 2 cut(s) 785, 1278
Bst2UI CCWGG 2 cut(s) 575, 802
Bst6I CTCTTC 3 cut(s) 275, 648, 1176
BstACI GRCGYC 1 cut(s) 494
BstC8I GCNNGC 4 cut(s) 681, 1294, 1298, 1335
BstDEI CTNAG 6 cut(s) 255, 372, 675, 759, 1062, 1137
BstF5I GGATG 2 cut(s) 841, 1072
BstFNI CGCG 2 cut(s) 16, 248
BstHHI GCGC 3 cut(s) 16, 42, 248
BstKTI GATC 4 cut(s) 481, 883, 1237, 1321
BstMAI GTCTC 3 cut(s) 461, 533, 1139
BstMBI GATC 4 cut(s) 478, 880, 1234, 1318
BstMCI CGRYCG 1 cut(s) 20
BstMWI GCNNNNNNNGC 2 cut(s) 457, 1056
BstNI CCWGG 2 cut(s) 575, 802
BstNSI RCATGY 1 cut(s) 595
BstSCI CCNGG 2 cut(s) 573, 800
BstSFI CTRYAG 1 cut(s) 623
BstSLI GKGCMC 2 cut(s) 552, 982
BstUI CGCG 2 cut(s) 16, 248
BstV1I GCAGC 1 cut(s) 1324
BstV2I GAAGAC 1 cut(s) 833
BstX2I RGATCY 1 cut(s) 880
BstXI CCANNNNNNTGG 1 cut(s) 88
BstYI RGATCY 1 cut(s) 880
BstZI CGGCCG 1 cut(s) 17
BsuRI GGCC 2 cut(s) 19, 260
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 2 cut(s) 841, 1072
BtsI GCAGTG 2 cut(s) 35, 315
BtsIMutI CAGTG 3 cut(s) 35, 261, 315
BveI ACCTGC 2 cut(s) 616, 1248
Cac8I GCNNGC 4 cut(s) 681, 1294, 1298, 1335
CaiI CAGNNNCTG 2 cut(s) 10, 1103
CciI TCATGA 1 cut(s) 715
CfoI GCGC 3 cut(s) 16, 42, 248
CseI GACGC 3 cut(s) 502, 1232, 1268
Csp6I GTAC 2 cut(s) 934, 960
CspCI CAANNNNNGTGG 2 cut(s) 1065, 1100
CviAII CATG 4 cut(s) 476, 592, 716, 778
CviQI GTAC 2 cut(s) 934, 960
DdeI CTNAG 6 cut(s) 255, 372, 675, 759, 1062, 1137
DpnI GATC 4 cut(s) 480, 882, 1236, 1320
DpnII GATC 4 cut(s) 478, 880, 1234, 1318
DraI TTTAAA 1 cut(s) 1350
EaeI YGGCCR 1 cut(s) 17
EagI CGGCCG 1 cut(s) 17
Eam1104I CTCTTC 3 cut(s) 275, 648, 1176
EarI CTCTTC 3 cut(s) 275, 648, 1176
EclXI CGGCCG 1 cut(s) 17
Eco130I CCWWGG 2 cut(s) 785, 1278
Eco24I GRGCYC 1 cut(s) 453
Eco31I GGTCTC 2 cut(s) 533, 1139
Eco52I CGGCCG 1 cut(s) 17
Eco57I CTGAAG 6 cut(s) 316, 539, 672, 1080, 1125, 1242
EcoRII CCWGG 2 cut(s) 573, 800
EcoT14I CCWWGG 2 cut(s) 785, 1278
EcoT38I GRGCYC 1 cut(s) 453
ErhI CCWWGG 2 cut(s) 785, 1278
FaeI CATG 4 cut(s) 479, 595, 719, 781
FaqI GGGAC 2 cut(s) 146, 1271
FatI CATG 4 cut(s) 475, 591, 715, 777
FauI CCCGC 1 cut(s) 241
FblI GTMKAC 2 cut(s) 559, 918
Fnu4HI GCNGC 2 cut(s) 17, 1338
FokI GGATG 2 cut(s) 848, 1079
FriOI GRGCYC 1 cut(s) 453
Fsp4HI GCNGC 2 cut(s) 17, 1338
FspBI CTAG 3 cut(s) 684, 786, 1254
GlaI GCGC 3 cut(s) 15, 41, 247
GluI GCNGC 2 cut(s) 17, 1338
GsuI CTGGAG 2 cut(s) 784, 1031
HaeIII GGCC 2 cut(s) 19, 260
HapII CCGG 3 cut(s) 31, 497, 693
HgaI GACGC 3 cut(s) 502, 1232, 1268
HhaI GCGC 3 cut(s) 16, 42, 248
Hin1I GRCGYC 1 cut(s) 494
Hin1II CATG 4 cut(s) 479, 595, 719, 781
Hin6I GCGC 3 cut(s) 14, 40, 246
HinP1I GCGC 3 cut(s) 14, 40, 246
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 4 cut(s) 583, 965, 1100, 1133
HpaI GTTAAC 1 cut(s) 199
HpaII CCGG 3 cut(s) 31, 497, 693
HphI GGTGA 7 cut(s) 104, 278, 639, 646, 774, 1220, 1229
Hpy166II GTNNAC 4 cut(s) 199, 560, 919, 980
Hpy188III TCNNGA 3 cut(s) 482, 716, 884
Hpy8I GTNNAC 4 cut(s) 199, 560, 919, 980
HpyAV CCTTC 6 cut(s) 53, 802, 1135, 1150, 1199, 1261
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 8 cut(s) 4, 105, 149, 537, 595, 601, 625, 980
HpyF10VI GCNNNNNNNGC 2 cut(s) 457, 1056
HpyF3I CTNAG 6 cut(s) 255, 372, 675, 759, 1062, 1137
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 494
Hsp92II CATG 4 cut(s) 479, 595, 719, 781
HspAI GCGC 3 cut(s) 14, 40, 246
KspAI GTTAAC 1 cut(s) 199
Kzo9I GATC 4 cut(s) 478, 880, 1234, 1318
LmnI GCTCC 5 cut(s) 193, 220, 457, 998, 1047
Lsp1109I GCAGC 1 cut(s) 1324
LweI GCATC 1 cut(s) 1279
MaeI CTAG 3 cut(s) 684, 786, 1254
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 3 cut(s) 33, 780, 790
MalI GATC 4 cut(s) 480, 882, 1236, 1320
MboI GATC 4 cut(s) 478, 880, 1234, 1318
MflI RGATCY 1 cut(s) 880
MhlI GDGCHC 5 cut(s) 453, 552, 708, 901, 982
MluCI AATT 4 cut(s) 232, 381, 732, 1303
MlyI GAGTC 2 cut(s) 1094, 1127
MmeI TCCRAC 3 cut(s) 141, 207, 791
MroXI GAANNNNTTC 2 cut(s) 641, 1194
MseI TTAA 5 cut(s) 198, 395, 660, 689, 1349
MspI CCGG 3 cut(s) 31, 497, 693
MspR9I CCNGG 2 cut(s) 575, 802
Mva1269I GAATGC 1 cut(s) 711
MvaI CCWGG 2 cut(s) 575, 802
MvnI CGCG 2 cut(s) 16, 248
MwoI GCNNNNNNNGC 2 cut(s) 457, 1056
NdeII GATC 4 cut(s) 478, 880, 1234, 1318
NlaIII CATG 4 cut(s) 479, 595, 719, 781
NlaIV GGNNCC 3 cut(s) 189, 222, 459
NmeAIII GCCGAG 2 cut(s) 45, 687
NmuCI GTSAC 3 cut(s) 33, 780, 790
NspI RCATGY 1 cut(s) 595
PagI TCATGA 1 cut(s) 715
PaqCI CACCTGC 2 cut(s) 616, 1248
PctI GAATGC 1 cut(s) 711
PdmI GAANNNNTTC 2 cut(s) 641, 1194
PfeI GAWTC 2 cut(s) 583, 965
PfoI TCCNGGA 1 cut(s) 800
PkrI GCNGC 2 cut(s) 18, 1339
PleI GAGTC 2 cut(s) 1094, 1127
PpsI GAGTC 2 cut(s) 1094, 1127
Psp6I CCWGG 2 cut(s) 573, 800
PspGI CCWGG 2 cut(s) 573, 800
PspN4I GGNNCC 3 cut(s) 189, 222, 459
PstI CTGCAG 1 cut(s) 627
PstNI CAGNNNCTG 2 cut(s) 10, 1103
PsuI RGATCY 1 cut(s) 880
RsaI GTAC 2 cut(s) 935, 961
RsaNI GTAC 2 cut(s) 934, 960
SaqAI TTAA 5 cut(s) 198, 395, 660, 689, 1349
SatI GCNGC 2 cut(s) 17, 1338
Sau3AI GATC 4 cut(s) 478, 880, 1234, 1318
SchI GAGTC 2 cut(s) 1094, 1127
ScrFI CCNGG 2 cut(s) 575, 802
SduI GDGCHC 5 cut(s) 453, 552, 708, 901, 982
SfaNI GCATC 1 cut(s) 1279
SfcI CTRYAG 1 cut(s) 623
SmlI CTYRAG 4 cut(s) 293, 323, 530, 884
SmoI CTYRAG 4 cut(s) 293, 323, 530, 884
Sse9I AATT 4 cut(s) 232, 381, 732, 1303
SsiI CCGC 2 cut(s) 16, 248
SspI AATATT 1 cut(s) 489
SspMI CTAG 3 cut(s) 684, 786, 1254
StyD4I CCNGG 2 cut(s) 573, 800
StyI CCWWGG 2 cut(s) 785, 1278
TaiI ACGT 1 cut(s) 138
TaqI TCGA 5 cut(s) 114, 824, 844, 895, 1321
TaqII GACCGA 1 cut(s) 1163
TasI AATT 4 cut(s) 232, 381, 732, 1303
TatI WGTACW 1 cut(s) 933
TauI GCSGC 1 cut(s) 19
TfiI GAWTC 2 cut(s) 583, 965
Tru1I TTAA 5 cut(s) 198, 395, 660, 689, 1349
Tru9I TTAA 5 cut(s) 198, 395, 660, 689, 1349
TscAI CASTG 3 cut(s) 42, 268, 315
TseFI GTSAC 3 cut(s) 33, 780, 790
TseI GCWGC 1 cut(s) 1337
Tsp45I GTSAC 3 cut(s) 33, 780, 790
TspDTI ATGAA 5 cut(s) 132, 170, 704, 732, 1326
TspGWI ACGGA 2 cut(s) 147, 180
TspRI CASTG 3 cut(s) 42, 268, 315
VneI GTGCAC 1 cut(s) 978
XapI RAATTY 3 cut(s) 232, 381, 1303
XceI RCATGY 1 cut(s) 595
XmaJI CCTAGG 1 cut(s) 785
XmiI GTMKAC 2 cut(s) 559, 918
XmnI GAANNNNTTC 2 cut(s) 641, 1194
XspI CTAG 3 cut(s) 684, 786, 1254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.