Rroxscaffold_7G00186240

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007087
Physical Location & Seq
Forward (+)
25605406 .. 25606422
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00186240.1

Sequence Viewer

Length: 849 bp
ATGGCTCTTTCTCGTTCCCCGCGTCTTCTCAAACCACATAATCACCTCAAGATTCCTAAAAGCAGTAGCTTGGGTGGTGTTGTATGCAAGGTGTTCGACGAAATGCCTGCTTGTGTGGACCCAATTGGTATTGCAAGGCTTCCATTGGAGGGTCACAGATGGGTGCATTCGGCTCCGGAGCACAAAGCTGTGGCGCCATTGGAGCGTTCTGGAGAAGGTAAAGTCGATGATGGTGGCGGTGGTAATGCTAAAGTGAAGAGGAAAAAGCTCAAGGGGAAACGAGCTGTGGTTAGGTGGCTCAAGTTCTTCAGGTACAAGAAGAAGAAAGATTTCGAGAGAATGACCGCGGAAGAAAAGATTCTACACAAATTGAGAAAGCAGGCTCAAAGGAAAGAGGAAAGGCTACTGGAAGCTCTTAAGAAGATCGAGCCGTCGGAGTCGGCAGAAACCGCCCATGATCCGGAGATATTGACACCAGAGGAGCATTTCTTCTTTTTGAAGATGGGGCTCAAGAGCAAGAATTATGTGCCTGTTGGAAGGCGGGGGATATACCAGGGTGTGATTCTGAACATGCATTTGCATTGGAAGAAACATCAAACGCTGCAGGTGATAGTGAAGACATTCTCACCTGAGGAGGTTAAGGATATTGCTTCTGAGCTGGCGAGGTTGACCGGAGGGATTGTGCTCGGAATTCATGAGGAGTACACGATTATTATGTATAGAGGGAAGAACTATTCGCAGCCACCAACAGAGATTATGTCACCCAGGATCACTCTCTCGAGGAAGAAGGTTCTGTTCTACTCTACTTCTATTAAATTTATGGCTTTTACAGAACAGAGTTGGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CRS1_YhbY EF-hand_1 EF-hand_5

Protein Analysis

282

Amino Acids

32.31

Weight (kDa)

9.94

Isoelectric Point (pI)

59.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 157 - 241 3.3e-15 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 595
Acc36I ACCTGC 1 cut(s) 595
AccB1I GGYRCC 1 cut(s) 193
AccII CGCG 2 cut(s) 22, 347
AccIII TCCGGA 2 cut(s) 175, 460
AciI CCGC 6 cut(s) 20, 237, 345, 347, 450, 541
AclWI GGATC 2 cut(s) 452, 776
AcsI RAATTY 2 cut(s) 690, 815
AcuI CTGAAG 1 cut(s) 292
AcyI GRCGYC 1 cut(s) 194
AfaI GTAC 2 cut(s) 314, 704
AfiI CCNNNNNNNGG 2 cut(s) 149, 460
AflII CTTAAG 1 cut(s) 416
AgsI TTSAA 1 cut(s) 499
AjnI CCWGG 2 cut(s) 552, 764
AluBI AGCT 6 cut(s) 69, 188, 268, 284, 413, 658
AluI AGCT 6 cut(s) 69, 188, 268, 284, 413, 658
Alw21I GWGCWC 2 cut(s) 183, 687
AlwI GGATC 2 cut(s) 452, 776
Ama87I CYCGRG 1 cut(s) 778
Aor13HI TCCGGA 2 cut(s) 175, 460
ApeKI GCWGC 2 cut(s) 601, 739
ApoI RAATTY 2 cut(s) 690, 815
Asp700I GAANNNNTTC 3 cut(s) 329, 357, 620
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 118
AsuHPI GGTGA 4 cut(s) 35, 618, 619, 753
AvaI CYCGRG 1 cut(s) 778
AvaII GGWCC 1 cut(s) 118
AxyI CCTNAGG 1 cut(s) 630
BanI GGYRCC 1 cut(s) 193
BanII GRGCYC 1 cut(s) 510
BbsI GAAGAC 2 cut(s) 17, 623
Bbv12I GWGCWC 2 cut(s) 183, 687
BbvI GCAGC 2 cut(s) 588, 751
BccI CCATC 3 cut(s) 153, 224, 496
BceAI ACGGC 1 cut(s) 415
BcgI CGANNNNNNTGC 4 cut(s) 76, 89, 110, 123
BciT130I CCWGG 2 cut(s) 554, 766
BfmI CTRYAG 1 cut(s) 602
BfoI RGCGCY 1 cut(s) 197
BfrI CTTAAG 1 cut(s) 416
BfuAI ACCTGC 1 cut(s) 595
BisI GCNGC 2 cut(s) 602, 740
BlsI GCNGC 2 cut(s) 603, 741
Bme1390I CCNGG 2 cut(s) 554, 766
Bme18I GGWCC 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 778
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 3 cut(s) 120, 174, 195
BmrFI CCNGG 2 cut(s) 554, 766
BpiI GAAGAC 2 cut(s) 17, 623
BpmI CTGGAG 1 cut(s) 231
BpuEI CTTGAG 4 cut(s) 32, 254, 284, 494
BsaHI GRCGYC 1 cut(s) 194
BsaJI CCNNGG 3 cut(s) 345, 553, 764
BsaWI WCCGGW 3 cut(s) 175, 460, 671
BsaXI ACNNNNNCTCC 2 cut(s) 666, 696
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 460
Bse1I ACTGG 1 cut(s) 411
Bse21I CCTNAGG 1 cut(s) 630
BseAI TCCGGA 2 cut(s) 175, 460
BseBI CCWGG 2 cut(s) 554, 766
BseDI CCNNGG 3 cut(s) 345, 553, 764
BseLI CCNNNNNNNGG 2 cut(s) 149, 460
BseMII CTCAG 2 cut(s) 621, 645
BseNI ACTGG 1 cut(s) 411
BseRI GAGGAG 3 cut(s) 494, 647, 713
BseXI GCAGC 2 cut(s) 588, 751
Bsh1236I CGCG 2 cut(s) 22, 347
BshNI GGYRCC 1 cut(s) 193
BsiHKAI GWGCWC 2 cut(s) 183, 687
BsiHKCI CYCGRG 1 cut(s) 778
BsiSI CCGG 3 cut(s) 176, 461, 672
BslI CCNNNNNNNGG 2 cut(s) 149, 460
BsmI GAATGC 1 cut(s) 166
BsoBI CYCGRG 1 cut(s) 778
Bsp1286I GDGCHC 3 cut(s) 183, 510, 687
Bsp13I TCCGGA 2 cut(s) 175, 460
Bsp143I GATC 3 cut(s) 423, 457, 768
BspACI CCGC 6 cut(s) 20, 237, 345, 347, 450, 541
BspCNI CTCAG 2 cut(s) 622, 646
BspEI TCCGGA 2 cut(s) 175, 460
BspFNI CGCG 2 cut(s) 22, 347
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 3 cut(s) 120, 174, 195
BspMAI CTGCAG 1 cut(s) 606
BspMI ACCTGC 1 cut(s) 595
BspPI GGATC 2 cut(s) 452, 776
BspT107I GGYRCC 1 cut(s) 193
BspTI CTTAAG 1 cut(s) 416
BsrI ACTGG 1 cut(s) 411
BssECI CCNNGG 3 cut(s) 345, 553, 764
BssMI GATC 3 cut(s) 423, 457, 768
BssNI GRCGYC 1 cut(s) 194
Bst2UI CCWGG 2 cut(s) 554, 766
Bst6I CTCTTC 1 cut(s) 251
BstACI GRCGYC 1 cut(s) 194
BstAFI CTTAAG 1 cut(s) 416
BstC8I GCNNGC 3 cut(s) 108, 381, 660
BstDEI CTNAG 2 cut(s) 630, 654
BstDSI CCRYGG 1 cut(s) 345
BstFNI CGCG 2 cut(s) 22, 347
BstH2I RGCGCY 1 cut(s) 197
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 3 cut(s) 426, 460, 771
BstMBI GATC 3 cut(s) 423, 457, 768
BstMWI GCNNNNNNNGC 2 cut(s) 202, 449
BstNI CCWGG 2 cut(s) 554, 766
BstNSI RCATGY 1 cut(s) 574
BstSCI CCNGG 2 cut(s) 552, 764
BstSFI CTRYAG 1 cut(s) 602
BstUI CGCG 2 cut(s) 22, 347
BstV1I GCAGC 2 cut(s) 588, 751
BstV2I GAAGAC 2 cut(s) 17, 623
Bsu36I CCTNAGG 1 cut(s) 630
BtgI CCRYGG 1 cut(s) 345
BveI ACCTGC 1 cut(s) 595
Cac8I GCNNGC 3 cut(s) 108, 381, 660
CciI TCATGA 1 cut(s) 694
CfoI GCGC 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 118
Cfr42I CCGCGG 1 cut(s) 348
CseI GACGC 1 cut(s) 11
Csp6I GTAC 2 cut(s) 313, 703
CviAII CATG 3 cut(s) 455, 571, 695
CviQI GTAC 2 cut(s) 313, 703
DdeI CTNAG 2 cut(s) 630, 654
DinI GGCGCC 1 cut(s) 195
DpnI GATC 3 cut(s) 425, 459, 770
DpnII GATC 3 cut(s) 423, 457, 768
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Eco24I GRGCYC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 292
Eco81I CCTNAGG 1 cut(s) 630
Eco88I CYCGRG 1 cut(s) 778
EcoRI GAATTC 1 cut(s) 690
EcoRII CCWGG 2 cut(s) 552, 764
EcoT22I ATGCAT 1 cut(s) 576
EcoT38I GRGCYC 1 cut(s) 510
EgeI GGCGCC 1 cut(s) 195
EheI GGCGCC 1 cut(s) 195
FaeI CATG 3 cut(s) 458, 574, 698
FatI CATG 3 cut(s) 454, 570, 694
FauI CCCGC 2 cut(s) 27, 534
Fnu4HI GCNGC 2 cut(s) 602, 740
FriOI GRGCYC 1 cut(s) 510
Fsp4HI GCNGC 2 cut(s) 602, 740
GlaI GCGC 1 cut(s) 195
GluI GCNGC 2 cut(s) 602, 740
GsuI CTGGAG 1 cut(s) 231
HaeII RGCGCY 1 cut(s) 197
HapII CCGG 3 cut(s) 176, 461, 672
HgaI GACGC 1 cut(s) 11
HhaI GCGC 1 cut(s) 196
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 3 cut(s) 458, 574, 698
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HincII GTYRAC 1 cut(s) 669
HindII GTYRAC 1 cut(s) 669
HinfI GANTC 4 cut(s) 52, 358, 437, 562
HpaII CCGG 3 cut(s) 176, 461, 672
HphI GGTGA 4 cut(s) 35, 618, 619, 753
Hpy166II GTNNAC 3 cut(s) 118, 669, 705
Hpy188I TCNGA 4 cut(s) 436, 567, 655, 689
Hpy188III TCNNGA 8 cut(s) 49, 176, 210, 334, 461, 511, 695, 778
Hpy8I GTNNAC 3 cut(s) 118, 669, 705
Hpy99I CGWCG 2 cut(s) 101, 436
HpyAV CCTTC 3 cut(s) 209, 531, 781
HpyCH4V TGCA 6 cut(s) 87, 134, 166, 574, 580, 604
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 449
HpyF3I CTNAG 2 cut(s) 630, 654
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 3 cut(s) 458, 574, 698
HspAI GCGC 1 cut(s) 194
KasI GGCGCC 1 cut(s) 193
Kpn2I TCCGGA 2 cut(s) 175, 460
KspI CCGCGG 1 cut(s) 348
Kzo9I GATC 3 cut(s) 423, 457, 768
LmnI GCTCC 4 cut(s) 178, 178, 202, 481
Lsp1109I GCAGC 2 cut(s) 588, 751
MaeIII GTNAC 2 cut(s) 152, 759
MalI GATC 3 cut(s) 425, 459, 770
MboI GATC 3 cut(s) 423, 457, 768
MfeI CAATTG 1 cut(s) 123
MhlI GDGCHC 3 cut(s) 183, 510, 687
MluCI AATT 5 cut(s) 123, 368, 520, 690, 815
Mly113I GGCGCC 1 cut(s) 194
MlyI GAGTC 1 cut(s) 446
MmeI TCCRAC 3 cut(s) 414, 514, 821
Mph1103I ATGCAT 1 cut(s) 576
MroI TCCGGA 2 cut(s) 175, 460
MroXI GAANNNNTTC 3 cut(s) 329, 357, 620
MseI TTAA 3 cut(s) 417, 639, 813
MspA1I CMGCKG 1 cut(s) 347
MspCI CTTAAG 1 cut(s) 416
MspI CCGG 3 cut(s) 176, 461, 672
MspR9I CCNGG 2 cut(s) 554, 766
MunI CAATTG 1 cut(s) 123
Mva1269I GAATGC 1 cut(s) 166
MvaI CCWGG 2 cut(s) 554, 766
MvnI CGCG 2 cut(s) 22, 347
MwoI GCNNNNNNNGC 2 cut(s) 202, 449
NarI GGCGCC 1 cut(s) 194
NdeII GATC 3 cut(s) 423, 457, 768
NlaIII CATG 3 cut(s) 458, 574, 698
NlaIV GGNNCC 3 cut(s) 120, 174, 195
NmuCI GTSAC 2 cut(s) 152, 759
NsiI ATGCAT 1 cut(s) 576
NspI RCATGY 1 cut(s) 574
PaeR7I CTCGAG 1 cut(s) 778
PagI TCATGA 1 cut(s) 694
PaqCI CACCTGC 1 cut(s) 595
PcsI WCGNNNNNNNCGW 1 cut(s) 19
PctI GAATGC 1 cut(s) 166
PdmI GAANNNNTTC 3 cut(s) 329, 357, 620
PfeI GAWTC 3 cut(s) 52, 358, 562
PkrI GCNGC 2 cut(s) 603, 741
PleI GAGTC 1 cut(s) 445
PluTI GGCGCC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 445
Psp6I CCWGG 2 cut(s) 552, 764
PspGI CCWGG 2 cut(s) 552, 764
PspN4I GGNNCC 3 cut(s) 120, 174, 195
PspPI GGNCC 1 cut(s) 118
PstI CTGCAG 1 cut(s) 606
RsaI GTAC 2 cut(s) 314, 704
RsaNI GTAC 2 cut(s) 313, 703
SacII CCGCGG 1 cut(s) 348
SaqAI TTAA 3 cut(s) 417, 639, 813
SatI GCNGC 2 cut(s) 602, 740
Sau3AI GATC 3 cut(s) 423, 457, 768
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 2 cut(s) 554, 766
SduI GDGCHC 3 cut(s) 183, 510, 687
SfcI CTRYAG 1 cut(s) 602
SfoI GGCGCC 1 cut(s) 195
Sfr274I CTCGAG 1 cut(s) 778
Sfr303I CCGCGG 1 cut(s) 348
SgrBI CCGCGG 1 cut(s) 348
SinI GGWCC 1 cut(s) 118
SlaI CTCGAG 1 cut(s) 778
SmlI CTYRAG 6 cut(s) 47, 269, 299, 416, 509, 778
SmoI CTYRAG 6 cut(s) 47, 269, 299, 416, 509, 778
Sse9I AATT 5 cut(s) 123, 368, 520, 690, 815
SsiI CCGC 6 cut(s) 20, 237, 345, 347, 450, 541
SspDI GGCGCC 1 cut(s) 193
StyD4I CCNGG 2 cut(s) 552, 764
TaqI TCGA 5 cut(s) 96, 225, 333, 426, 779
TasI AATT 5 cut(s) 123, 368, 520, 690, 815
TatI WGTACW 1 cut(s) 702
TfiI GAWTC 3 cut(s) 52, 358, 562
Tru1I TTAA 3 cut(s) 417, 639, 813
Tru9I TTAA 3 cut(s) 417, 639, 813
TseFI GTSAC 2 cut(s) 152, 759
TseI GCWGC 2 cut(s) 601, 739
Tsp45I GTSAC 2 cut(s) 152, 759
TspDTI ATGAA 1 cut(s) 683
Vha464I CTTAAG 1 cut(s) 416
VpaK11BI GGWCC 1 cut(s) 118
XapI RAATTY 2 cut(s) 690, 815
XceI RCATGY 1 cut(s) 574
XhoI CTCGAG 1 cut(s) 778
XmnI GAANNNNTTC 3 cut(s) 329, 357, 620
Zsp2I ATGCAT 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.