Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011791

Physical Location & Seq

Genomic Coordinates Reverse (-)

16438029 .. 16443054

Gene Structure 5026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g19310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAAGGTTTTAAGATGAACAGCAACAGCACTACGACTGCGGCTACGAAAGGGAAGAAGGATGAGCTTTATCATGTTATTCACAAGGTGCCTTCTGGTGATACTCCTTATGTTAGAGCCAAGCATGCTCAGCTTGTTGAAAAGGATCCAGAGGCTGCAATTGTGTTGTTTTGGAAGGCAATAAACGCAGGAGATAGAGTAGACAGTGCCCTAAAGGATATGGCTGTGGTGATGAAGCAATTAGACAGAACTGAAGAAGCCATTGAAGCTGTCAAGTCCTTCAGAGGCCTTTGCTCTAAACAAGCACAAGACTCGCTTGATAATGTTCTCATCGACTTGTACAAAAAATGTGGGAAAATCGAGGAACAGATTGACTTGCTCAAGAGGAAGCTGAGGTTGATATACCAAGGAGCAGCCTTCAATGGCAGACCGACTAAGACTGCACGCTCTCATGGGAAGAAGTTCCAAGTCTCTGTTAAGCAAGAAACCTCCAGATTATTGGGAAATTTGGGTTGGGCATACATGCAGAAAGGAAACTATATGATGGCAGAGGTAGTGTATCGAAAAGCTCAGATGATCGATCCTGACTCCAATAAGGCATGCAACTTGGGACTCTGCCTGATCAAACAGGGCCGCTATGAAGATGCTCAGTTAGTTCTTGAGGATGTATTGCAAAGTCGACTTCCGGGTGCGGATGAGACTAAGTCGAGGAGAAGGGCACATGAACTGCTAATGGAATTGAGGTCCATACATGATGATCTACCTGAATCACTGGACTTGTTGGCGCTAGATGATGATTTTGTAAAGGGGCTTGAGCAGTTGATGAATGAATGGGGTCCTTTTAGATCCAAGAGGCTCCCCATCTTCGAAGAAATCTCTCAATTCAGAGATCAAATGGCATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006109 GO:0006792 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010438 GO:0010439 GO:0010675 GO:0017053 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0042594 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043455 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051716 GO:0062012 GO:0065007 GO:0070013 GO:0071496 GO:0080090 GO:0090568 GO:1900376

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_8

Protein Analysis

302

Amino Acids

34.21

Weight (kDa)

8.44

Isoelectric Point (pI)

48.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	165 - 196	1.6e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48850
fragaria_vesca	FvH4_2g19310 FvH4_2g19310
malus_domestica	MD05G1178100.v1.1 MD10G1166300.v1.1
prunus_persica	Prupe.8G204700_v2.0.a1
pyrus_communis	pycom05g16440 pycom10g14340
rosa_chinensis	RchiOBHm_Chr6g0285121
rosa_laevigata	RLG00000012671
rosa_multiflora	Rmu_sc0002535.1_g000032 Rmu_sc0003797.1_g000006
rosa_roxburghii	Rroxscaffold_7G00183650 Rroxscaffold_7G00184020
rosa_rugosa	Rorug06G0171300
rosa_samantha	Rh6BG283100 Rh6CG285000 Rh6DG278100
rosa_wichuraiana	Rw6G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	88
AccI	GTMKAC	2 cut(s)	201, 679
AciI	CCGC	3 cut(s)	41, 634, 692
AclWI	GGATC	4 cut(s)	140, 153, 575, 840
AcsI	RAATTY	1 cut(s)	505
AcuI	CTGAAG	2 cut(s)	265, 273
AdeI	CACNNNGTG	1 cut(s)	88
AfaI	GTAC	1 cut(s)	341
AgsI	TTSAA	3 cut(s)	140, 266, 421
AjuI	GAANNNNNNNTTGG	2 cut(s)	496, 528
AluBI	AGCT	5 cut(s)	67, 133, 269, 391, 569
AluI	AGCT	5 cut(s)	67, 133, 269, 391, 569
Alw26I	GTCTC	2 cut(s)	475, 692
AlwI	GGATC	4 cut(s)	140, 153, 575, 840
AlwNI	CAGNNNCTG	1 cut(s)	155
AoxI	GGCC	2 cut(s)	286, 631
ApeKI	GCWGC	2 cut(s)	155, 413
ApoI	RAATTY	1 cut(s)	505
Asp700I	GAANNNNTTC	1 cut(s)	461
AspLEI	GCGC	1 cut(s)	787
AspS9I	GGNCC	3 cut(s)	631, 744, 836
AsuC2I	CCSGG	1 cut(s)	687
AsuHPI	GGTGA	2 cut(s)	110, 241
AsuII	TTCGAA	1 cut(s)	867
AvaII	GGWCC	2 cut(s)	744, 836
BaeGI	GKGCMC	2 cut(s)	211, 721
BamHI	GGATCC	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	88
BbvCI	CCTCAGC	1 cut(s)	392
BbvI	GCAGC	2 cut(s)	142, 425
BccI	CCATC	2 cut(s)	538, 869
BcgI	CGANNNNNNTGC	2 cut(s)	294, 328
BclI	TGATCA	1 cut(s)	621
BcnI	CCSGG	1 cut(s)	687
BcoDI	GTCTC	2 cut(s)	475, 692
BfaI	CTAG	1 cut(s)	788
BfoI	RGCGCY	1 cut(s)	788
BisI	GCNGC	4 cut(s)	42, 156, 414, 634
BlpI	GCTNAGC	1 cut(s)	129
BlsI	GCNGC	4 cut(s)	43, 157, 415, 635
Bme1390I	CCNGG	1 cut(s)	687
Bme18I	GGWCC	2 cut(s)	744, 836
BmgT120I	GGNCC	3 cut(s)	631, 744, 836
BmiI	GGNNCC	4 cut(s)	90, 147, 837, 857
BmrFI	CCNGG	1 cut(s)	687
BmsI	GCATC	1 cut(s)	634
BpmI	CTGGAG	1 cut(s)	475
Bpu10I	CCTNAGC	1 cut(s)	392
Bpu1102I	GCTNAGC	1 cut(s)	129
Bpu14I	TTCGAA	1 cut(s)	867
BpuEI	CTTGAG	3 cut(s)	365, 680, 833
BpuMI	CCSGG	1 cut(s)	687
Bsa29I	ATCGAT	1 cut(s)	579
BsaJI	CCNNGG	1 cut(s)	406
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bse1I	ACTGG	1 cut(s)	777
BseCI	ATCGAT	1 cut(s)	579
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	3 cut(s)	67, 670, 700
BseMII	CTCAG	4 cut(s)	143, 383, 584, 662
BseNI	ACTGG	1 cut(s)	777
BseRI	GAGGAG	1 cut(s)	724
BseSI	GKGCMC	2 cut(s)	211, 721
BseXI	GCAGC	2 cut(s)	142, 425
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	2 cut(s)	288, 633
BshNI	GGYRCC	1 cut(s)	88
BshVI	ATCGAT	1 cut(s)	579
BsiSI	CCGG	1 cut(s)	686
BslFI	GGGAC	1 cut(s)	624
BsmAI	GTCTC	2 cut(s)	475, 692
BsmFI	GGGAC	1 cut(s)	624
BsnI	GGCC	2 cut(s)	288, 633
Bsp119I	TTCGAA	1 cut(s)	867
Bsp1286I	GDGCHC	2 cut(s)	211, 721
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	7 cut(s)	145, 576, 580, 621, 757, 845, 889
Bsp1720I	GCTNAGC	1 cut(s)	129
BspACI	CCGC	3 cut(s)	41, 634, 692
BspANI	GGCC	2 cut(s)	288, 633
BspCNI	CTCAG	4 cut(s)	142, 384, 583, 661
BspDI	ATCGAT	1 cut(s)	579
BspLI	GGNNCC	4 cut(s)	90, 147, 837, 857
BspPI	GGATC	4 cut(s)	140, 153, 575, 840
BspT104I	TTCGAA	1 cut(s)	867
BspT107I	GGYRCC	1 cut(s)	88
BsrGI	TGTACA	1 cut(s)	339
BsrI	ACTGG	1 cut(s)	777
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	7 cut(s)	145, 576, 580, 621, 757, 845, 889
BssT1I	CCWWGG	1 cut(s)	406
Bst4CI	ACNGT	1 cut(s)	206
BstAUI	TGTACA	1 cut(s)	339
BstBI	TTCGAA	1 cut(s)	867
BstC8I	GCNNGC	3 cut(s)	126, 445, 601
BstDEI	CTNAG	6 cut(s)	129, 392, 435, 570, 648, 702
BstF5I	GGATG	3 cut(s)	67, 670, 700
BstH2I	RGCGCY	1 cut(s)	788
BstHHI	GCGC	1 cut(s)	787
BstKTI	GATC	7 cut(s)	148, 579, 583, 624, 760, 848, 892
BstMAI	GTCTC	2 cut(s)	475, 692
BstMBI	GATC	7 cut(s)	145, 576, 580, 621, 757, 845, 889
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 130, 185, 266
BstNSI	RCATGY	4 cut(s)	128, 526, 603, 903
BstSCI	CCNGG	1 cut(s)	685
BstSLI	GKGCMC	2 cut(s)	211, 721
BstV1I	GCAGC	2 cut(s)	142, 425
BstX2I	RGATCY	2 cut(s)	145, 845
BstXI	CCANNNNNNTGG	1 cut(s)	499
BstYI	RGATCY	2 cut(s)	145, 845
Bsu15I	ATCGAT	1 cut(s)	579
BsuRI	GGCC	2 cut(s)	288, 633
BsuTUI	ATCGAT	1 cut(s)	579
BtsCI	GGATG	3 cut(s)	67, 670, 700
BtsIMutI	CAGTG	2 cut(s)	211, 770
Cac8I	GCNNGC	3 cut(s)	126, 445, 601
CaiI	CAGNNNCTG	1 cut(s)	155
CfoI	GCGC	1 cut(s)	787
Cfr13I	GGNCC	3 cut(s)	631, 744, 836
ClaI	ATCGAT	1 cut(s)	579
Csp6I	GTAC	1 cut(s)	340
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
CviAII	CATG	8 cut(s)	74, 125, 452, 523, 600, 722, 752, 900
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	6 cut(s)	129, 392, 435, 570, 648, 702
DpnI	GATC	7 cut(s)	147, 578, 582, 623, 759, 847, 891
DpnII	GATC	7 cut(s)	145, 576, 580, 621, 757, 845, 889
DraIII	CACNNNGTG	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	406
Eco147I	AGGCCT	1 cut(s)	288
Eco47I	GGWCC	2 cut(s)	744, 836
Eco57I	CTGAAG	2 cut(s)	265, 273
EcoO109I	RGGNCCY	1 cut(s)	836
EcoT14I	CCWWGG	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	406
FaeI	CATG	8 cut(s)	77, 128, 455, 526, 603, 725, 755, 903
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FaqI	GGGAC	1 cut(s)	624
FatI	CATG	8 cut(s)	73, 124, 451, 522, 599, 721, 751, 899
FbaI	TGATCA	1 cut(s)	621
FblI	GTMKAC	2 cut(s)	201, 679
Fnu4HI	GCNGC	4 cut(s)	42, 156, 414, 634
FokI	GGATG	3 cut(s)	74, 677, 707
Fsp4HI	GCNGC	4 cut(s)	42, 156, 414, 634
FspBI	CTAG	1 cut(s)	788
GlaI	GCGC	1 cut(s)	786
GluI	GCNGC	4 cut(s)	42, 156, 414, 634
GsuI	CTGGAG	1 cut(s)	475
HaeII	RGCGCY	1 cut(s)	788
HaeIII	GGCC	2 cut(s)	288, 633
HapII	CCGG	1 cut(s)	686
HhaI	GCGC	1 cut(s)	787
Hin1II	CATG	8 cut(s)	77, 128, 455, 526, 603, 725, 755, 903
Hin6I	GCGC	1 cut(s)	785
HinP1I	GCGC	1 cut(s)	785
HincII	GTYRAC	1 cut(s)	680
HindII	GTYRAC	1 cut(s)	680
HinfI	GANTC	4 cut(s)	311, 587, 612, 767
HpaII	CCGG	1 cut(s)	686
HphI	GGTGA	2 cut(s)	110, 241
Hpy166II	GTNNAC	2 cut(s)	202, 680
Hpy188I	TCNGA	3 cut(s)	284, 573, 887
Hpy188III	TCNNGA	5 cut(s)	149, 382, 492, 584, 659
Hpy8I	GTNNAC	2 cut(s)	202, 680
HpyAV	CCTTC	6 cut(s)	52, 102, 169, 289, 427, 708
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	5 cut(s)	158, 443, 526, 603, 673
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 130, 185, 266
HpyF3I	CTNAG	6 cut(s)	129, 392, 435, 570, 648, 702
Hsp92II	CATG	8 cut(s)	77, 128, 455, 526, 603, 725, 755, 903
HspAI	GCGC	1 cut(s)	785
Ksp22I	TGATCA	1 cut(s)	621
Kzo9I	GATC	7 cut(s)	145, 576, 580, 621, 757, 845, 889
LmnI	GCTCC	2 cut(s)	410, 861
Lsp1109I	GCAGC	2 cut(s)	142, 425
LweI	GCATC	1 cut(s)	634
MaeI	CTAG	1 cut(s)	788
MalI	GATC	7 cut(s)	147, 578, 582, 623, 759, 847, 891
MboI	GATC	7 cut(s)	145, 576, 580, 621, 757, 845, 889
MboII	GAAGA	6 cut(s)	67, 266, 469, 653, 856, 881
MfeI	CAATTG	1 cut(s)	159
MflI	RGATCY	2 cut(s)	145, 845
MhlI	GDGCHC	2 cut(s)	211, 721
MluCI	AATT	5 cut(s)	159, 239, 505, 737, 881
MlyI	GAGTC	3 cut(s)	305, 581, 606
MroXI	GAANNNNTTC	1 cut(s)	461
MseI	TTAA	3 cut(s)	12, 477, 904
MspI	CCGG	1 cut(s)	686
MspR9I	CCNGG	1 cut(s)	687
MunI	CAATTG	1 cut(s)	159
MwoI	GCNNNNNNNGC	4 cut(s)	125, 130, 185, 266
NciI	CCSGG	1 cut(s)	687
NdeII	GATC	7 cut(s)	145, 576, 580, 621, 757, 845, 889
NlaIII	CATG	8 cut(s)	77, 128, 455, 526, 603, 725, 755, 903
NlaIV	GGNNCC	4 cut(s)	90, 147, 837, 857
NspI	RCATGY	4 cut(s)	128, 526, 603, 903
NspV	TTCGAA	1 cut(s)	867
PaeI	GCATGC	2 cut(s)	128, 603
PceI	AGGCCT	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	767
PflFI	GACNNNGTC	1 cut(s)	703
PkrI	GCNGC	4 cut(s)	43, 157, 415, 635
PleI	GAGTC	3 cut(s)	305, 581, 606
PpsI	GAGTC	3 cut(s)	305, 581, 606
PpuMI	RGGWCCY	1 cut(s)	836
Psp5II	RGGWCCY	1 cut(s)	836
PspN4I	GGNNCC	4 cut(s)	90, 147, 837, 857
PspPI	GGNCC	3 cut(s)	631, 744, 836
PspPPI	RGGWCCY	1 cut(s)	836
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	2 cut(s)	145, 845
PsyI	GACNNNGTC	1 cut(s)	703
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SalI	GTCGAC	1 cut(s)	678
SaqAI	TTAA	3 cut(s)	12, 477, 904
SatI	GCNGC	4 cut(s)	42, 156, 414, 634
Sau3AI	GATC	7 cut(s)	145, 576, 580, 621, 757, 845, 889
Sau96I	GGNCC	3 cut(s)	631, 744, 836
SchI	GAGTC	3 cut(s)	305, 581, 606
ScrFI	CCNGG	1 cut(s)	687
SduI	GDGCHC	2 cut(s)	211, 721
SfaNI	GCATC	1 cut(s)	634
SfuI	TTCGAA	1 cut(s)	867
SinI	GGWCC	2 cut(s)	744, 836
SmlI	CTYRAG	3 cut(s)	380, 659, 812
SmoI	CTYRAG	3 cut(s)	380, 659, 812
SphI	GCATGC	2 cut(s)	128, 603
Sse9I	AATT	5 cut(s)	159, 239, 505, 737, 881
SseBI	AGGCCT	1 cut(s)	288
SsiI	CCGC	3 cut(s)	41, 634, 692
SspMI	CTAG	1 cut(s)	788
StuI	AGGCCT	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	685
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	7 cut(s)	333, 360, 562, 579, 679, 707, 867
TaqII	GACCGA	1 cut(s)	445
TasI	AATT	5 cut(s)	159, 239, 505, 737, 881
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	2 cut(s)	44, 636
TfiI	GAWTC	1 cut(s)	767
Tru1I	TTAA	3 cut(s)	12, 477, 904
Tru9I	TTAA	3 cut(s)	12, 477, 904
TscAI	CASTG	2 cut(s)	211, 777
TseI	GCWGC	2 cut(s)	155, 413
TspDTI	ATGAA	6 cut(s)	32, 248, 654, 738, 839, 843
TspRI	CASTG	2 cut(s)	211, 777
Tth111I	GACNNNGTC	1 cut(s)	703
VpaK11BI	GGWCC	2 cut(s)	744, 836
XapI	RAATTY	1 cut(s)	505
XceI	RCATGY	4 cut(s)	128, 526, 603, 903
XmiI	GTMKAC	2 cut(s)	201, 679
XmnI	GAANNNNTTC	1 cut(s)	461
XspI	CTAG	1 cut(s)	788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.