Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011791

Physical Location & Seq

Genomic Coordinates Reverse (-)

19695122 .. 19695903

Gene Structure 782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g16440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCTGTGGTGATGAAGCAATTGGATAGAACTGAGGAGGCCATTGAAGCTGTTAAGTCCTTTAGAGGCCTTTGCTCCAAACAAGCCCAAGACTCTCTTGACAATGTCCTCATTGACTTGTACAAGAAATGTGGCAAAATTGAAGAGCAAATTGACTTGCTCAAGAGGAAGCTTAGGTTGATATACCAAGGAGCCGCCTTCAATGGAAGGCCGACTAAAACTGCGCGCTCTCACGGAAAGAAGTTCCAAGTTTCAGTTACGCAAGAGACTTCGAGATTACTGGGCAATTTGGGCTGGGCCTATATGCAAAAGGGTAACTACATGATGGCGGAGGTCGTGTATCAAAAGGCCCAAATGATCGACCCTGACTCGAACAAGGCCTGTAACTTGGGCCTGTGCCTAATCAAACAGGGTCGATACGAAGATGCCCGTTTGATTCTGGAAGACGTGGTGCAGAGTAGACTTCCAGGATCTGAGGAGAGCAAGTCGAAGAAACGGGCCCACGAGTTGTTAATGGAATTGAGGTCGACGAGTTGTTTGCCAGAGTCATTGGATCTACTGAGCCTGGATGATGATTTTGTGAAGGGGCTTGAGCAATTGATGAATGAATGGGGTCCGTTTAGATCCAAGAGGCTTCCAATCTTTGAAGAAATCTCTCAATTTAGAGATCAAGTGGCATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006109 GO:0006792 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010438 GO:0010439 GO:0010675 GO:0017053 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0042594 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043455 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051716 GO:0062012 GO:0065007 GO:0070013 GO:0071496 GO:0080090 GO:0090568 GO:1900376

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

228

Amino Acids

25.91

Weight (kDa)

8.45

Isoelectric Point (pI)

57.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	92 - 123	5e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48850
fragaria_vesca	FvH4_2g19310 FvH4_2g19310
malus_domestica	MD05G1178100.v1.1 MD10G1166300.v1.1
prunus_persica	Prupe.8G204700_v2.0.a1
pyrus_communis	pycom05g16440 pycom10g14340
rosa_chinensis	RchiOBHm_Chr6g0285121
rosa_laevigata	RLG00000012671
rosa_multiflora	Rmu_sc0002535.1_g000032 Rmu_sc0003797.1_g000006
rosa_roxburghii	Rroxscaffold_7G00183650 Rroxscaffold_7G00184020
rosa_rugosa	Rorug06G0171300
rosa_samantha	Rh6BG283100 Rh6CG285000 Rh6DG278100
rosa_wichuraiana	Rw6G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	460, 527
AccII	CGCG	1 cut(s)	226
AciI	CCGC	2 cut(s)	195, 329
AclWI	GGATC	3 cut(s)	478, 561, 618
AfaI	GTAC	1 cut(s)	122
AgsI	TTSAA	4 cut(s)	47, 143, 202, 647
AjiI	CACGTC	1 cut(s)	448
AjnI	CCWGG	2 cut(s)	466, 564
AluBI	AGCT	2 cut(s)	50, 172
AluI	AGCT	2 cut(s)	50, 172
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	3 cut(s)	478, 561, 618
AlwNI	CAGNNNCTG	1 cut(s)	473
AoxI	GGCC	8 cut(s)	39, 67, 209, 297, 348, 378, 391, 498
ApaI	GGGCCC	1 cut(s)	502
ArsI	GACNNNNNNTTYG	2 cut(s)	520, 552
AspLEI	GCGC	2 cut(s)	226, 228
AspS9I	GGNCC	6 cut(s)	297, 349, 391, 498, 499, 614
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	614
BaeGI	GKGCMC	1 cut(s)	502
BanII	GRGCYC	1 cut(s)	502
BauI	CACGAG	1 cut(s)	503
BbsI	GAAGAC	1 cut(s)	450
BccI	CCATC	1 cut(s)	319
BcgI	CGANNNNNNTGC	2 cut(s)	520, 554
BciT130I	CCWGG	2 cut(s)	468, 566
BcoDI	GTCTC	1 cut(s)	260
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	2 cut(s)	468, 566
Bme18I	GGWCC	1 cut(s)	614
BmgBI	CACGTC	1 cut(s)	448
BmgT120I	GGNCC	6 cut(s)	297, 349, 391, 498, 499, 614
BmiI	GGNNCC	3 cut(s)	193, 500, 615
BmrFI	CCNGG	2 cut(s)	468, 566
BmrI	ACTGGG	1 cut(s)	290
BmsI	GCATC	1 cut(s)	415
BmuI	ACTGGG	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	450
Bpu10I	CCTNAGC	1 cut(s)	173
BpuEI	CTTGAG	2 cut(s)	146, 611
BsaJI	CCNNGG	1 cut(s)	187
BsaXI	ACNNNNNCTCC	4 cut(s)	323, 353, 470, 500
Bse1I	ACTGG	1 cut(s)	285
BseBI	CCWGG	2 cut(s)	468, 566
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	1 cut(s)	574
BseMII	CTCAG	3 cut(s)	24, 465, 551
BseNI	ACTGG	1 cut(s)	285
BsePI	GCGCGC	1 cut(s)	224
BseRI	GAGGAG	2 cut(s)	50, 491
BseSI	GKGCMC	1 cut(s)	502
BseYI	CCCAGC	1 cut(s)	294
BsgI	GTGCAG	1 cut(s)	473
Bsh1236I	CGCG	1 cut(s)	226
BshFI	GGCC	8 cut(s)	41, 69, 211, 299, 350, 380, 393, 500
BsmAI	GTCTC	1 cut(s)	260
BsnI	GGCC	8 cut(s)	41, 69, 211, 299, 350, 380, 393, 500
Bsp120I	GGGCCC	1 cut(s)	498
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp1407I	TGTACA	1 cut(s)	120
Bsp143I	GATC	5 cut(s)	357, 470, 553, 623, 667
BspACI	CCGC	2 cut(s)	195, 329
BspANI	GGCC	8 cut(s)	41, 69, 211, 299, 350, 380, 393, 500
BspCNI	CTCAG	3 cut(s)	25, 466, 552
BspFNI	CGCG	1 cut(s)	226
BspLI	GGNNCC	3 cut(s)	193, 500, 615
BspPI	GGATC	3 cut(s)	478, 561, 618
BspQI	GCTCTTC	1 cut(s)	138
BsrGI	TGTACA	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	187
BssHII	GCGCGC	1 cut(s)	224
BssMI	GATC	5 cut(s)	357, 470, 553, 623, 667
BssSI	CACGAG	1 cut(s)	503
BssT1I	CCWWGG	1 cut(s)	187
Bst2BI	CACGAG	1 cut(s)	503
Bst2UI	CCWGG	2 cut(s)	468, 566
Bst6I	CTCTTC	1 cut(s)	138
BstAUI	TGTACA	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	4 cut(s)	33, 173, 474, 560
BstF5I	GGATG	1 cut(s)	574
BstFNI	CGCG	1 cut(s)	226
BstHHI	GCGC	2 cut(s)	226, 228
BstKTI	GATC	5 cut(s)	360, 473, 556, 626, 670
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	5 cut(s)	357, 470, 553, 623, 667
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 291
BstNI	CCWGG	2 cut(s)	468, 566
BstNSI	RCATGY	1 cut(s)	681
BstSCI	CCNGG	2 cut(s)	466, 564
BstSLI	GKGCMC	1 cut(s)	502
BstUI	CGCG	1 cut(s)	226
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	3 cut(s)	470, 553, 623
BstYI	RGATCY	3 cut(s)	470, 553, 623
BsuRI	GGCC	8 cut(s)	41, 69, 211, 299, 350, 380, 393, 500
BtrI	CACGTC	1 cut(s)	448
BtsCI	GGATG	1 cut(s)	574
Cac8I	GCNNGC	1 cut(s)	226
CaiI	CAGNNNCTG	1 cut(s)	473
CfoI	GCGC	2 cut(s)	226, 228
Cfr13I	GGNCC	6 cut(s)	297, 349, 391, 498, 499, 614
Csp6I	GTAC	1 cut(s)	121
CspCI	CAANNNNNGTGG	2 cut(s)	112, 147
CviAII	CATG	2 cut(s)	322, 678
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	4 cut(s)	33, 173, 474, 560
DpnI	GATC	5 cut(s)	359, 472, 555, 625, 669
DpnII	GATC	5 cut(s)	357, 470, 553, 623, 667
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
EciI	GGCGGA	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	187
Eco147I	AGGCCT	2 cut(s)	69, 380
Eco24I	GRGCYC	1 cut(s)	502
Eco47I	GGWCC	1 cut(s)	614
EcoRII	CCWGG	2 cut(s)	466, 564
EcoT14I	CCWWGG	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	502
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	2 cut(s)	325, 681
FaiI	YATR	5 cut(s)	184, 303, 305, 323, 679
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FatI	CATG	2 cut(s)	321, 677
FblI	GTMKAC	2 cut(s)	460, 527
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	1 cut(s)	581
FriOI	GRGCYC	1 cut(s)	502
Fsp4HI	GCNGC	1 cut(s)	195
GlaI	GCGC	2 cut(s)	225, 227
GluI	GCNGC	1 cut(s)	195
GsaI	CCCAGC	1 cut(s)	298
HaeIII	GGCC	8 cut(s)	41, 69, 211, 299, 350, 380, 393, 500
HhaI	GCGC	2 cut(s)	226, 228
Hin1II	CATG	2 cut(s)	325, 681
Hin6I	GCGC	2 cut(s)	224, 226
HinP1I	GCGC	2 cut(s)	224, 226
HincII	GTYRAC	1 cut(s)	528
HindII	GTYRAC	1 cut(s)	528
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	4 cut(s)	92, 368, 436, 545
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	2 cut(s)	461, 528
Hpy188I	TCNGA	1 cut(s)	475
Hpy188III	TCNNGA	4 cut(s)	98, 163, 273, 440
Hpy8I	GTNNAC	2 cut(s)	461, 528
Hpy99I	CGWCG	1 cut(s)	532
HpyAV	CCTTC	3 cut(s)	201, 208, 577
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	2 cut(s)	307, 454
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 291
HpyF3I	CTNAG	4 cut(s)	33, 173, 474, 560
HpySE526I	ACGT	1 cut(s)	447
Hsp92II	CATG	2 cut(s)	325, 681
HspAI	GCGC	2 cut(s)	224, 226
Kzo9I	GATC	5 cut(s)	357, 470, 553, 623, 667
LguI	GCTCTTC	1 cut(s)	138
LmnI	GCTCC	2 cut(s)	80, 191
LweI	GCATC	1 cut(s)	415
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	3 cut(s)	256, 314, 383
MalI	GATC	5 cut(s)	359, 472, 555, 625, 669
MboI	GATC	5 cut(s)	357, 470, 553, 623, 667
MboII	GAAGA	5 cut(s)	155, 434, 455, 502, 659
MfeI	CAATTG	2 cut(s)	20, 596
MflI	RGATCY	3 cut(s)	470, 553, 623
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	7 cut(s)	20, 138, 150, 286, 518, 596, 659
MlyI	GAGTC	3 cut(s)	86, 362, 554
MnlI	CCTC	9 cut(s)	28, 31, 59, 119, 159, 325, 469, 516, 624
MseI	TTAA	3 cut(s)	54, 512, 682
MspR9I	CCNGG	2 cut(s)	468, 566
MunI	CAATTG	2 cut(s)	20, 596
MvaI	CCWGG	2 cut(s)	468, 566
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	2 cut(s)	47, 291
NdeII	GATC	5 cut(s)	357, 470, 553, 623, 667
NlaIII	CATG	2 cut(s)	325, 681
NlaIV	GGNNCC	3 cut(s)	193, 500, 615
NspI	RCATGY	1 cut(s)	681
PauI	GCGCGC	1 cut(s)	224
PceI	AGGCCT	2 cut(s)	69, 380
PciSI	GCTCTTC	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	436
PflFI	GACNNNGTC	1 cut(s)	104
PfoI	TCCNGGA	1 cut(s)	466
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	3 cut(s)	86, 362, 553
PpsI	GAGTC	3 cut(s)	86, 362, 553
Psp6I	CCWGG	2 cut(s)	466, 564
PspFI	CCCAGC	1 cut(s)	294
PspGI	CCWGG	2 cut(s)	466, 564
PspN4I	GGNNCC	3 cut(s)	193, 500, 615
PspOMI	GGGCCC	1 cut(s)	498
PspPI	GGNCC	6 cut(s)	297, 349, 391, 498, 499, 614
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	3 cut(s)	470, 553, 623
PsyI	GACNNNGTC	1 cut(s)	104
PteI	GCGCGC	1 cut(s)	224
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SalI	GTCGAC	1 cut(s)	526
SapI	GCTCTTC	1 cut(s)	138
SaqAI	TTAA	3 cut(s)	54, 512, 682
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	5 cut(s)	357, 470, 553, 623, 667
Sau96I	GGNCC	6 cut(s)	297, 349, 391, 498, 499, 614
SchI	GAGTC	3 cut(s)	86, 362, 554
ScrFI	CCNGG	2 cut(s)	468, 566
SduI	GDGCHC	1 cut(s)	502
SetI	ASST	6 cut(s)	52, 174, 179, 336, 450, 527
SfaNI	GCATC	1 cut(s)	415
SinI	GGWCC	1 cut(s)	614
SmlI	CTYRAG	2 cut(s)	161, 590
SmoI	CTYRAG	2 cut(s)	161, 590
Sse9I	AATT	7 cut(s)	20, 138, 150, 286, 518, 596, 659
SseBI	AGGCCT	2 cut(s)	69, 380
SsiI	CCGC	2 cut(s)	195, 329
StuI	AGGCCT	2 cut(s)	69, 380
StyD4I	CCNGG	2 cut(s)	466, 564
StyI	CCWWGG	1 cut(s)	187
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	6 cut(s)	272, 360, 371, 415, 488, 527
TasI	AATT	7 cut(s)	20, 138, 150, 286, 518, 596, 659
TatI	WGTACW	1 cut(s)	120
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	3 cut(s)	54, 512, 682
Tru9I	TTAA	3 cut(s)	54, 512, 682
TspDTI	ATGAA	3 cut(s)	29, 617, 621
TspGWI	ACGGA	2 cut(s)	249, 606
Tth111I	GACNNNGTC	1 cut(s)	104
VpaK11BI	GGWCC	1 cut(s)	614
XceI	RCATGY	1 cut(s)	681
XmiI	GTMKAC	2 cut(s)	460, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.