Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0011791

Physical Location & Seq

Genomic Coordinates Reverse (-)

47196677 .. 47199637

Gene Structure 2961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G024280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGAGGGAATGATGAGTTTCAAGATTAGCCACAACTGCACTACTGCTACGACGACGAAGGGGAAGAAGGATGAGCTTTATCATGTTATTCACAAGGTGCCTCCTGGTGATACTCCTTATGTTAGAGCCAAGCATGCTCAGCTTGTCGAAAAGGATCCAGAGGCTGCAATAGTGTTGTTTTGGAAGGCAATAAATGCAGGAGATAGAGTAGACAGTGCCCTAAAGGACATGGCCGTTGTGATGAAGCAACTAGACAGAACTGAAGAAGCCATTGAAGCTATCAAGTCCTTCAGAGGCCTTTGCTCTAAACAAGCACAAGACTCGCTGGATAATGTTCTCATCGACTTGTACAAGAAGTGTGGGAAGATCGAGGAGCAGATTGACTTGCTCAAGAGGAAGCTGAGGTTGATATACCAAGGAGCAGCCTTCAATGGCAGACAGACTAAGACTGCACGCTCTCATGGAAAGAAGTTCCAGGTCTCTGTTAAGCAAGAAACCTCCAGATTATTGGGAAATTTGGGATGGGCATACATGCAGAAAGGAAACTATATGATGGCAGAGGTAGTGTATCGAAAAGCTCAGATGATCGATCCTGACTCCAATAAGGCATGCAACTTAGGACTCTCCCTAATCAAACAGGGCCGCTATGAAGATGCTCAGTTGGTTCTTGAGGATGTATTGCAAAGTCGTCTTCCGGGTGCCGATGAGACTAAGTCGAGAAGAAGGGCTCATGAATTGCTAATGGAATTGAGGTCCATACATGATCCACCTGAGTCCGTGGACTTATTGGGGATAGATGATGATTTTGTCAAGGGGCTTGAGCAGTTGATGAATGAATGGGGCCCTTTTAGATCCAAGAGGCTTCCCATCTTCGAAGAAATCTCTCAATTTAGAGATCAAGTGGCATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006109 GO:0006792 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010438 GO:0010439 GO:0010675 GO:0017053 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0042594 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043455 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051716 GO:0062012 GO:0065007 GO:0070013 GO:0071496 GO:0080090 GO:0090568 GO:1900376

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_8

Protein Analysis

303

Amino Acids

34.46

Weight (kDa)

8.64

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	168 - 199	1.6e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48850
fragaria_vesca	FvH4_2g19310 FvH4_2g19310
malus_domestica	MD05G1178100.v1.1 MD10G1166300.v1.1
prunus_persica	Prupe.8G204700_v2.0.a1
pyrus_communis	pycom05g16440 pycom10g14340
rosa_chinensis	RchiOBHm_Chr6g0285121
rosa_laevigata	RLG00000012671
rosa_multiflora	Rmu_sc0002535.1_g000032 Rmu_sc0003797.1_g000006
rosa_roxburghii	Rroxscaffold_7G00183650 Rroxscaffold_7G00184020
rosa_rugosa	Rorug06G0171300
rosa_samantha	Rh6BG283100 Rh6CG285000 Rh6DG278100
rosa_wichuraiana	Rw6G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	97, 698
AccI	GTMKAC	1 cut(s)	210
AciI	CCGC	1 cut(s)	643
AclWI	GGATC	5 cut(s)	149, 162, 584, 758, 846
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	514
AcuI	CTGAAG	2 cut(s)	274, 282
AdeI	CACNNNGTG	1 cut(s)	97
AfaI	GTAC	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	22, 275, 430
AjnI	CCWGG	2 cut(s)	103, 474
AluBI	AGCT	5 cut(s)	76, 142, 278, 400, 578
AluI	AGCT	5 cut(s)	76, 142, 278, 400, 578
Alw26I	GTCTC	2 cut(s)	484, 701
AlwI	GGATC	5 cut(s)	149, 162, 584, 758, 846
AlwNI	CAGNNNCTG	1 cut(s)	164
AoxI	GGCC	4 cut(s)	231, 295, 640, 841
ApaI	GGGCCC	1 cut(s)	845
ApeKI	GCWGC	2 cut(s)	164, 422
ApoI	RAATTY	1 cut(s)	514
AspS9I	GGNCC	4 cut(s)	640, 753, 841, 842
AsuC2I	CCSGG	1 cut(s)	696
AsuHPI	GGTGA	1 cut(s)	119
AsuII	TTCGAA	1 cut(s)	873
AvaII	GGWCC	1 cut(s)	753
BaeGI	GKGCMC	2 cut(s)	220, 845
BamHI	GGATCC	1 cut(s)	154
BanI	GGYRCC	2 cut(s)	97, 698
BanII	GRGCYC	2 cut(s)	730, 845
BbsI	GAAGAC	1 cut(s)	683
BbvCI	CCTCAGC	1 cut(s)	401
BbvI	GCAGC	2 cut(s)	151, 434
BccI	CCATC	3 cut(s)	516, 547, 875
BceAI	ACGGC	1 cut(s)	218
BcgI	CGANNNNNNTGC	2 cut(s)	303, 337
BciT130I	CCWGG	2 cut(s)	105, 476
BcnI	CCSGG	1 cut(s)	696
BcoDI	GTCTC	2 cut(s)	484, 701
BfaI	CTAG	1 cut(s)	251
BisI	GCNGC	3 cut(s)	165, 423, 643
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	3 cut(s)	166, 424, 644
Bme1390I	CCNGG	3 cut(s)	105, 476, 696
Bme18I	GGWCC	1 cut(s)	753
BmgT120I	GGNCC	4 cut(s)	640, 753, 841, 842
BmiI	GGNNCC	5 cut(s)	99, 156, 700, 842, 843
BmrFI	CCNGG	3 cut(s)	105, 476, 696
BmsI	GCATC	1 cut(s)	643
BpiI	GAAGAC	1 cut(s)	683
BpmI	CTGGAG	1 cut(s)	484
Bpu10I	CCTNAGC	1 cut(s)	401
Bpu1102I	GCTNAGC	1 cut(s)	138
Bpu14I	TTCGAA	1 cut(s)	873
BpuEI	CTTGAG	3 cut(s)	374, 689, 839
BpuMI	CCSGG	1 cut(s)	696
Bsa29I	ATCGAT	1 cut(s)	588
BsaI	GGTCTC	1 cut(s)	484
BsaJI	CCNNGG	2 cut(s)	415, 777
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
BseBI	CCWGG	2 cut(s)	105, 476
BseCI	ATCGAT	1 cut(s)	588
BseDI	CCNNGG	2 cut(s)	415, 777
BseGI	GGATG	3 cut(s)	76, 527, 679
BseMII	CTCAG	5 cut(s)	152, 392, 593, 671, 762
BseRI	GAGGAG	1 cut(s)	386
BseSI	GKGCMC	2 cut(s)	220, 845
BseXI	GCAGC	2 cut(s)	151, 434
BsgI	GTGCAG	2 cut(s)	22, 435
BshFI	GGCC	4 cut(s)	233, 297, 642, 843
BshNI	GGYRCC	2 cut(s)	97, 698
BshVI	ATCGAT	1 cut(s)	588
BsiSI	CCGG	1 cut(s)	695
BsmAI	GTCTC	2 cut(s)	484, 701
BsnI	GGCC	4 cut(s)	233, 297, 642, 843
Bso31I	GGTCTC	1 cut(s)	484
Bsp119I	TTCGAA	1 cut(s)	873
Bsp120I	GGGCCC	1 cut(s)	841
Bsp1286I	GDGCHC	3 cut(s)	220, 730, 845
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	7 cut(s)	154, 366, 585, 589, 763, 851, 895
Bsp1720I	GCTNAGC	1 cut(s)	138
BspACI	CCGC	1 cut(s)	643
BspANI	GGCC	4 cut(s)	233, 297, 642, 843
BspCNI	CTCAG	5 cut(s)	151, 393, 592, 670, 763
BspDI	ATCGAT	1 cut(s)	588
BspHI	TCATGA	1 cut(s)	730
BspLI	GGNNCC	5 cut(s)	99, 156, 700, 842, 843
BspPI	GGATC	5 cut(s)	149, 162, 584, 758, 846
BspT104I	TTCGAA	1 cut(s)	873
BspT107I	GGYRCC	2 cut(s)	97, 698
BspTNI	GGTCTC	1 cut(s)	484
BsrGI	TGTACA	1 cut(s)	348
BssECI	CCNNGG	2 cut(s)	415, 777
BssMI	GATC	7 cut(s)	154, 366, 585, 589, 763, 851, 895
BssT1I	CCWWGG	1 cut(s)	415
Bst2UI	CCWGG	2 cut(s)	105, 476
Bst4CI	ACNGT	1 cut(s)	215
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstAUI	TGTACA	1 cut(s)	348
BstBI	TTCGAA	1 cut(s)	873
BstC8I	GCNNGC	3 cut(s)	135, 454, 610
BstDEI	CTNAG	8 cut(s)	138, 401, 444, 579, 616, 657, 711, 771
BstDSI	CCRYGG	1 cut(s)	777
BstF5I	GGATG	3 cut(s)	76, 527, 679
BstKTI	GATC	7 cut(s)	157, 369, 588, 592, 766, 854, 898
BstMAI	GTCTC	2 cut(s)	484, 701
BstMBI	GATC	7 cut(s)	154, 366, 585, 589, 763, 851, 895
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 134, 139, 194, 275
BstNI	CCWGG	2 cut(s)	105, 476
BstNSI	RCATGY	4 cut(s)	137, 535, 612, 909
BstSCI	CCNGG	3 cut(s)	103, 474, 694
BstSLI	GKGCMC	2 cut(s)	220, 845
BstV1I	GCAGC	2 cut(s)	151, 434
BstV2I	GAAGAC	1 cut(s)	683
BstX2I	RGATCY	2 cut(s)	154, 851
BstXI	CCANNNNNNTGG	1 cut(s)	508
BstYI	RGATCY	2 cut(s)	154, 851
Bsu15I	ATCGAT	1 cut(s)	588
BsuRI	GGCC	4 cut(s)	233, 297, 642, 843
BsuTUI	ATCGAT	1 cut(s)	588
BtgI	CCRYGG	1 cut(s)	777
BtsCI	GGATG	3 cut(s)	76, 527, 679
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	3 cut(s)	135, 454, 610
CaiI	CAGNNNCTG	1 cut(s)	164
CciI	TCATGA	1 cut(s)	730
Cfr13I	GGNCC	4 cut(s)	640, 753, 841, 842
ClaI	ATCGAT	1 cut(s)	588
Csp6I	GTAC	1 cut(s)	349
CspCI	CAANNNNNGTGG	2 cut(s)	340, 375
CviAII	CATG	9 cut(s)	83, 134, 229, 461, 532, 609, 731, 761, 906
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	8 cut(s)	138, 401, 444, 579, 616, 657, 711, 771
DpnI	GATC	7 cut(s)	156, 368, 587, 591, 765, 853, 897
DpnII	GATC	7 cut(s)	154, 366, 585, 589, 763, 851, 895
DraIII	CACNNNGTG	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	415
Eco147I	AGGCCT	1 cut(s)	297
Eco24I	GRGCYC	2 cut(s)	730, 845
Eco31I	GGTCTC	1 cut(s)	484
Eco47I	GGWCC	1 cut(s)	753
Eco57I	CTGAAG	2 cut(s)	274, 282
EcoO109I	RGGNCCY	2 cut(s)	841, 842
EcoRII	CCWGG	2 cut(s)	103, 474
EcoT14I	CCWWGG	1 cut(s)	415
EcoT38I	GRGCYC	2 cut(s)	730, 845
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	9 cut(s)	86, 137, 232, 464, 535, 612, 734, 764, 909
FatI	CATG	9 cut(s)	82, 133, 228, 460, 531, 608, 730, 760, 905
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	3 cut(s)	165, 423, 643
FokI	GGATG	3 cut(s)	83, 534, 686
FriOI	GRGCYC	2 cut(s)	730, 845
Fsp4HI	GCNGC	3 cut(s)	165, 423, 643
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	3 cut(s)	165, 423, 643
GsuI	CTGGAG	1 cut(s)	484
HaeIII	GGCC	4 cut(s)	233, 297, 642, 843
HapII	CCGG	1 cut(s)	695
Hin1II	CATG	9 cut(s)	86, 137, 232, 464, 535, 612, 734, 764, 909
HinfI	GANTC	4 cut(s)	320, 596, 621, 773
HpaII	CCGG	1 cut(s)	695
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	2 cut(s)	211, 781
Hpy188I	TCNGA	2 cut(s)	293, 582
Hpy188III	TCNNGA	8 cut(s)	22, 158, 391, 501, 593, 668, 717, 731
Hpy8I	GTNNAC	2 cut(s)	211, 781
Hpy99I	CGWCG	2 cut(s)	55, 58
HpyAV	CCTTC	6 cut(s)	52, 61, 178, 298, 436, 717
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	7 cut(s)	39, 167, 197, 452, 535, 612, 682
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 134, 139, 194, 275
HpyF3I	CTNAG	8 cut(s)	138, 401, 444, 579, 616, 657, 711, 771
Hsp92II	CATG	9 cut(s)	86, 137, 232, 464, 535, 612, 734, 764, 909
Kzo9I	GATC	7 cut(s)	154, 366, 585, 589, 763, 851, 895
LmnI	GCTCC	2 cut(s)	373, 419
Lsp1109I	GCAGC	2 cut(s)	151, 434
LweI	GCATC	1 cut(s)	643
MaeI	CTAG	1 cut(s)	251
MalI	GATC	7 cut(s)	156, 368, 587, 591, 765, 853, 897
MboI	GATC	7 cut(s)	154, 366, 585, 589, 763, 851, 895
MboII	GAAGA	8 cut(s)	76, 275, 376, 662, 683, 732, 862, 887
MflI	RGATCY	2 cut(s)	154, 851
MhlI	GDGCHC	3 cut(s)	220, 730, 845
MluCI	AATT	4 cut(s)	514, 734, 746, 887
MlyI	GAGTC	4 cut(s)	314, 590, 615, 782
MseI	TTAA	2 cut(s)	486, 910
MspI	CCGG	1 cut(s)	695
MspR9I	CCNGG	3 cut(s)	105, 476, 696
MvaI	CCWGG	2 cut(s)	105, 476
MwoI	GCNNNNNNNGC	5 cut(s)	36, 134, 139, 194, 275
NciI	CCSGG	1 cut(s)	696
NdeII	GATC	7 cut(s)	154, 366, 585, 589, 763, 851, 895
NlaIII	CATG	9 cut(s)	86, 137, 232, 464, 535, 612, 734, 764, 909
NlaIV	GGNNCC	5 cut(s)	99, 156, 700, 842, 843
NspI	RCATGY	4 cut(s)	137, 535, 612, 909
NspV	TTCGAA	1 cut(s)	873
PaeI	GCATGC	2 cut(s)	137, 612
PagI	TCATGA	1 cut(s)	730
PceI	AGGCCT	1 cut(s)	297
PflFI	GACNNNGTC	1 cut(s)	712
PkrI	GCNGC	3 cut(s)	166, 424, 644
PleI	GAGTC	4 cut(s)	314, 590, 615, 781
PpsI	GAGTC	4 cut(s)	314, 590, 615, 781
Psp6I	CCWGG	2 cut(s)	103, 474
PspGI	CCWGG	2 cut(s)	103, 474
PspN4I	GGNNCC	5 cut(s)	99, 156, 700, 842, 843
PspOMI	GGGCCC	1 cut(s)	841
PspPI	GGNCC	4 cut(s)	640, 753, 841, 842
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	2 cut(s)	154, 851
PsyI	GACNNNGTC	1 cut(s)	712
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SaqAI	TTAA	2 cut(s)	486, 910
SatI	GCNGC	3 cut(s)	165, 423, 643
Sau3AI	GATC	7 cut(s)	154, 366, 585, 589, 763, 851, 895
Sau96I	GGNCC	4 cut(s)	640, 753, 841, 842
SchI	GAGTC	4 cut(s)	314, 590, 615, 782
ScrFI	CCNGG	3 cut(s)	105, 476, 696
SduI	GDGCHC	3 cut(s)	220, 730, 845
SfaNI	GCATC	1 cut(s)	643
SfuI	TTCGAA	1 cut(s)	873
SinI	GGWCC	1 cut(s)	753
SmlI	CTYRAG	3 cut(s)	389, 668, 818
SmoI	CTYRAG	3 cut(s)	389, 668, 818
SphI	GCATGC	2 cut(s)	137, 612
Sse9I	AATT	4 cut(s)	514, 734, 746, 887
SseBI	AGGCCT	1 cut(s)	297
SsiI	CCGC	1 cut(s)	643
SspMI	CTAG	1 cut(s)	251
StuI	AGGCCT	1 cut(s)	297
StyD4I	CCNGG	3 cut(s)	103, 474, 694
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	1 cut(s)	215
TaqI	TCGA	7 cut(s)	147, 342, 369, 571, 588, 716, 873
TasI	AATT	4 cut(s)	514, 734, 746, 887
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	1 cut(s)	645
Tru1I	TTAA	2 cut(s)	486, 910
Tru9I	TTAA	2 cut(s)	486, 910
TscAI	CASTG	1 cut(s)	220
TseI	GCWGC	2 cut(s)	164, 422
TspDTI	ATGAA	5 cut(s)	257, 663, 747, 845, 849
TspGWI	ACGGA	1 cut(s)	766
TspRI	CASTG	1 cut(s)	220
Tth111I	GACNNNGTC	1 cut(s)	712
VpaK11BI	GGWCC	1 cut(s)	753
XapI	RAATTY	1 cut(s)	514
XceI	RCATGY	4 cut(s)	137, 535, 612, 909
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.