Rmu_sc0003797.1_g000006

Tetratricopeptide repeat

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003797.1
Physical Location & Seq
Forward (+)
21928 .. 27101
5174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003797.1_g000006.1.cds

Sequence Viewer

Length: 1431 bp
atggagggaatgatgagtttcaagattagcaacaacagcactactgctgcgacgacgaaggggaagaaggatgagctttatcatgttattcacaaggtgcctcctggtgatactccttatgttagagccaagcatgctcagcttgtcgaaaaggatccagaggctgcaatagtcttgttttggaaggcaataaatgcaggagatagagtagacagtgccctaaaggacatggccgttgtgatgaagcaactagacagaactgaagaagccattgaagctatcaagtccttcagaggcttttgctctaaacaagcacaagactcgctggataatgttctcatcgacttgtacaagaagtgtgggaagatcgaggagcagattgacttgctcaagaggaagctgaggttgatataccaaggagcagccttcaatggcagacagactaagactgcacgctctcatggaaagaagttccaggtctctgttaagcaagaaacctccagattattgggaaatttgggatgggcatacatgcagaaaggaaactatatgatggcagaggtagtgtatcgaaaagctcagatgatcgatcctgactccaataaggcatgcaacttgggactctccctaatcaaacagggccgctatgaagatgctcagttggttcttgaggatgtattgcaaagtcgtcttccgggtgccgatgagactaagtcgagaagaagggctcatgaattgctaatggaattgaggtccatacatgatccgcttgagtccgtggacttattggggatagatgatgattttgtcaaggggcttgagcagttgatgaatgaatggggcccttttagatccaagaggcttcccatcttcgaagaaatctctcaatttagagatcaagtggcattccggctcgcggaggctccagcttcggaggcaagggcctcttctcgacgagctcgatattcaccccgatcaaatctggcgaaagaccaaggccattctccaccctttacgggtcaactcggacctccacaaggagtcagacttgtctggccccttcctcctctacgtttccctttgccttttcaattactcaccggaaaaatccaattcggcgtaatactcgacgggatcatcgtctccttcttcttcctcaaattcgggtgggtggcggctggtgacaggattccggcagcaggtgacaggaatccggcgaaagttggccggtttccagcggccggtgacaagattctggcgaagtctccaatgggcagagctgggccaatattcctatgcccaacccggcccgttattctaacgtcctcctgtcgtgccgggccactaacgggcttggaccttgccgaggcacttttaagcatgccatgctcgcgcttagcggcccgtttgccaccttactcatcagtttga

Protein Analysis

476

Amino Acids

52.92

Weight (kDa)

9.54

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011791)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1190
Acc36I ACCTGC 1 cut(s) 1190
AccB1I GGYRCC 2 cut(s) 97, 698
AccI GTMKAC 1 cut(s) 210
AccII CGCG 2 cut(s) 917, 1393
AciI CCGC 6 cut(s) 643, 767, 917, 1175, 1238, 1400
AclWI GGATC 6 cut(s) 149, 162, 584, 758, 846, 1142
AcoI YGGCCR 3 cut(s) 231, 1225, 1239
AcsI RAATTY 2 cut(s) 514, 1160
AcuI CTGAAG 2 cut(s) 274, 282
AdeI CACNNNGTG 1 cut(s) 97
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 7 cut(s) 916, 1016, 1037, 1199, 1241, 1349, 1366
AgsI TTSAA 4 cut(s) 22, 275, 430, 1091
AjnI CCWGG 2 cut(s) 103, 474
AluBI AGCT 8 cut(s) 76, 142, 278, 400, 578, 929, 959, 1280
AluI AGCT 8 cut(s) 76, 142, 278, 400, 578, 929, 959, 1280
Alw21I GWGCWC 1 cut(s) 961
Alw26I GTCTC 4 cut(s) 484, 701, 1147, 1269
AlwI GGATC 6 cut(s) 149, 162, 584, 758, 846, 1142
AlwNI CAGNNNCTG 1 cut(s) 164
ApaI GGGCCC 1 cut(s) 845
ApeKI GCWGC 4 cut(s) 47, 164, 422, 1196
ApoI RAATTY 2 cut(s) 514, 1160
AspLEI GCGC 1 cut(s) 1395
AsuC2I CCSGG 3 cut(s) 696, 1306, 1339
AsuHPI GGTGA 6 cut(s) 119, 960, 1090, 1193, 1214, 1256
AsuII TTCGAA 1 cut(s) 873
AvaII GGWCC 3 cut(s) 753, 1028, 1357
BaeGI GKGCMC 2 cut(s) 220, 845
BamHI GGATCC 1 cut(s) 154
BanI GGYRCC 2 cut(s) 97, 698
BanII GRGCYC 3 cut(s) 730, 845, 961
BbsI GAAGAC 1 cut(s) 683
Bbv12I GWGCWC 1 cut(s) 961
BbvCI CCTCAGC 1 cut(s) 401
BbvI GCAGC 4 cut(s) 34, 151, 434, 1208
BccI CCATC 3 cut(s) 516, 547, 875
BceAI ACGGC 1 cut(s) 218
BcgI CGANNNNNNTGC 2 cut(s) 303, 337
BciT130I CCWGG 2 cut(s) 105, 476
BcnI CCSGG 3 cut(s) 696, 1306, 1339
BcoDI GTCTC 4 cut(s) 484, 701, 1147, 1269
BfaI CTAG 1 cut(s) 251
BfuAI ACCTGC 1 cut(s) 1190
BisI GCNGC 8 cut(s) 48, 165, 423, 643, 1176, 1197, 1239, 1401
BlpI GCTNAGC 2 cut(s) 138, 1396
BlsI GCNGC 8 cut(s) 49, 166, 424, 644, 1177, 1198, 1240, 1402
Bme1390I CCNGG 5 cut(s) 105, 476, 696, 1306, 1339
Bme18I GGWCC 3 cut(s) 753, 1028, 1357
BmiI GGNNCC 7 cut(s) 99, 156, 700, 842, 843, 924, 1058
BmrFI CCNGG 5 cut(s) 105, 476, 696, 1306, 1339
BmsI GCATC 1 cut(s) 643
BpiI GAAGAC 1 cut(s) 683
BpmI CTGGAG 2 cut(s) 484, 909
Bpu10I CCTNAGC 1 cut(s) 401
Bpu1102I GCTNAGC 2 cut(s) 138, 1396
Bpu14I TTCGAA 1 cut(s) 873
BpuEI CTTGAG 4 cut(s) 374, 689, 791, 839
BpuMI CCSGG 3 cut(s) 696, 1306, 1339
Bsa29I ATCGAT 1 cut(s) 588
BsaI GGTCTC 1 cut(s) 484
BsaJI CCNNGG 4 cut(s) 415, 777, 994, 1365
BsaWI WCCGGW 1 cut(s) 1100
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 7 cut(s) 916, 1016, 1037, 1199, 1241, 1349, 1366
Bse118I RCCGGY 2 cut(s) 1227, 1241
BseBI CCWGG 2 cut(s) 105, 476
BseCI ATCGAT 1 cut(s) 588
BseDI CCNNGG 4 cut(s) 415, 777, 994, 1365
BseGI GGATG 3 cut(s) 76, 527, 679
BseLI CCNNNNNNNGG 7 cut(s) 916, 1016, 1037, 1199, 1241, 1349, 1366
BseMII CTCAG 4 cut(s) 152, 392, 593, 671
BseRI GAGGAG 2 cut(s) 386, 1056
BseSI GKGCMC 2 cut(s) 220, 845
BseX3I CGGCCG 1 cut(s) 1239
BseXI GCAGC 4 cut(s) 34, 151, 434, 1208
BseYI CCCAGC 1 cut(s) 1280
BsgI GTGCAG 1 cut(s) 435
Bsh1236I CGCG 2 cut(s) 917, 1393
Bsh1285I CGRYCG 1 cut(s) 1242
BshNI GGYRCC 2 cut(s) 97, 698
BshVI ATCGAT 1 cut(s) 588
BsiEI CGRYCG 1 cut(s) 1242
BsiHKAI GWGCWC 1 cut(s) 961
BsiSI CCGG 9 cut(s) 695, 910, 1101, 1193, 1214, 1228, 1242, 1306, 1338
BslFI GGGAC 1 cut(s) 633
BslI CCNNNNNNNGG 7 cut(s) 916, 1016, 1037, 1199, 1241, 1349, 1366
BsmAI GTCTC 4 cut(s) 484, 701, 1147, 1269
BsmBI CGTCTC 1 cut(s) 1147
BsmFI GGGAC 1 cut(s) 633
BsmI GAATGC 1 cut(s) 905
Bso31I GGTCTC 1 cut(s) 484
Bsp119I TTCGAA 1 cut(s) 873
Bsp120I GGGCCC 1 cut(s) 841
Bsp1286I GDGCHC 4 cut(s) 220, 730, 845, 961
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 9 cut(s) 154, 366, 585, 589, 763, 851, 895, 974, 1134
Bsp1720I GCTNAGC 2 cut(s) 138, 1396
BspACI CCGC 6 cut(s) 643, 767, 917, 1175, 1238, 1400
BspCNI CTCAG 4 cut(s) 151, 393, 592, 670
BspDI ATCGAT 1 cut(s) 588
BspFNI CGCG 2 cut(s) 917, 1393
BspHI TCATGA 1 cut(s) 730
BspLI GGNNCC 7 cut(s) 99, 156, 700, 842, 843, 924, 1058
BspMI ACCTGC 1 cut(s) 1190
BspPI GGATC 6 cut(s) 149, 162, 584, 758, 846, 1142
BspT104I TTCGAA 1 cut(s) 873
BspT107I GGYRCC 2 cut(s) 97, 698
BspTNI GGTCTC 1 cut(s) 484
BsrFI RCCGGY 2 cut(s) 1227, 1241
BsrGI TGTACA 1 cut(s) 348
BssAI RCCGGY 2 cut(s) 1227, 1241
BssECI CCNNGG 4 cut(s) 415, 777, 994, 1365
BssMI GATC 9 cut(s) 154, 366, 585, 589, 763, 851, 895, 974, 1134
BssT1I CCWWGG 2 cut(s) 415, 994
Bst2UI CCWGG 2 cut(s) 105, 476
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 952
BstAPI GCANNNNNTGC 2 cut(s) 194, 1386
BstAUI TGTACA 1 cut(s) 348
BstBI TTCGAA 1 cut(s) 873
BstC8I GCNNGC 6 cut(s) 135, 454, 610, 915, 1382, 1391
BstDEI CTNAG 7 cut(s) 138, 401, 444, 579, 657, 711, 1396
BstDSI CCRYGG 1 cut(s) 777
BstENI CCTNNNNNAGG 2 cut(s) 1035, 1364
BstF5I GGATG 3 cut(s) 76, 527, 679
BstFNI CGCG 2 cut(s) 917, 1393
BstHHI GCGC 1 cut(s) 1395
BstKTI GATC 9 cut(s) 157, 369, 588, 592, 766, 854, 898, 977, 1137
BstMAI GTCTC 4 cut(s) 484, 701, 1147, 1269
BstMBI GATC 9 cut(s) 154, 366, 585, 589, 763, 851, 895, 974, 1134
BstMCI CGRYCG 1 cut(s) 1242
BstMWI GCNNNNNNNGC 8 cut(s) 36, 134, 139, 194, 275, 935, 1386, 1390
BstNI CCWGG 2 cut(s) 105, 476
BstNSI RCATGY 4 cut(s) 137, 535, 612, 1384
BstSCI CCNGG 5 cut(s) 103, 474, 694, 1304, 1337
BstSLI GKGCMC 2 cut(s) 220, 845
BstUI CGCG 2 cut(s) 917, 1393
BstV1I GCAGC 4 cut(s) 34, 151, 434, 1208
BstV2I GAAGAC 1 cut(s) 683
BstX2I RGATCY 2 cut(s) 154, 851
BstXI CCANNNNNNTGG 1 cut(s) 508
BstYI RGATCY 2 cut(s) 154, 851
BstZI CGGCCG 1 cut(s) 1239
Bsu15I ATCGAT 1 cut(s) 588
BsuTUI ATCGAT 1 cut(s) 588
BtgI CCRYGG 1 cut(s) 777
BtsCI GGATG 3 cut(s) 76, 527, 679
BtsIMutI CAGTG 1 cut(s) 220
BveI ACCTGC 1 cut(s) 1190
Cac8I GCNNGC 6 cut(s) 135, 454, 610, 915, 1382, 1391
CaiI CAGNNNCTG 1 cut(s) 164
CciI TCATGA 1 cut(s) 730
CfoI GCGC 1 cut(s) 1395
Cfr10I RCCGGY 2 cut(s) 1227, 1241
ClaI ATCGAT 1 cut(s) 588
Csp6I GTAC 1 cut(s) 349
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 7 cut(s) 138, 401, 444, 579, 657, 711, 1396
DpnI GATC 9 cut(s) 156, 368, 587, 591, 765, 853, 897, 976, 1136
DpnII GATC 9 cut(s) 154, 366, 585, 589, 763, 851, 895, 974, 1134
DraIII CACNNNGTG 1 cut(s) 97
EaeI YGGCCR 3 cut(s) 231, 1225, 1239
EagI CGGCCG 1 cut(s) 1239
Eam1104I CTCTTC 1 cut(s) 952
EarI CTCTTC 1 cut(s) 952
Ecl136II GAGCTC 1 cut(s) 959
EclXI CGGCCG 1 cut(s) 1239
Eco130I CCWWGG 2 cut(s) 415, 994
Eco24I GRGCYC 3 cut(s) 730, 845, 961
Eco31I GGTCTC 1 cut(s) 484
Eco47I GGWCC 3 cut(s) 753, 1028, 1357
Eco52I CGGCCG 1 cut(s) 1239
Eco53kI GAGCTC 1 cut(s) 959
Eco57I CTGAAG 2 cut(s) 274, 282
EcoICRI GAGCTC 1 cut(s) 959
EcoNI CCTNNNNNAGG 2 cut(s) 1035, 1364
EcoO109I RGGNCCY 3 cut(s) 841, 842, 942
EcoRII CCWGG 2 cut(s) 103, 474
EcoT14I CCWWGG 2 cut(s) 415, 994
EcoT38I GRGCYC 3 cut(s) 730, 845, 961
ErhI CCWWGG 2 cut(s) 415, 994
Esp3I CGTCTC 1 cut(s) 1147
FalI AAGNNNNNCTT 2 cut(s) 931, 963
FaqI GGGAC 1 cut(s) 633
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 8 cut(s) 48, 165, 423, 643, 1176, 1197, 1239, 1401
FokI GGATG 3 cut(s) 83, 534, 686
FriOI GRGCYC 3 cut(s) 730, 845, 961
Fsp4HI GCNGC 8 cut(s) 48, 165, 423, 643, 1176, 1197, 1239, 1401
FspBI CTAG 1 cut(s) 251
GlaI GCGC 1 cut(s) 1394
GluI GCNGC 8 cut(s) 48, 165, 423, 643, 1176, 1197, 1239, 1401
GsaI CCCAGC 1 cut(s) 1284
GsuI CTGGAG 2 cut(s) 484, 909
HapII CCGG 9 cut(s) 695, 910, 1101, 1193, 1214, 1228, 1242, 1306, 1338
HhaI GCGC 1 cut(s) 1395
Hin6I GCGC 1 cut(s) 1393
HinP1I GCGC 1 cut(s) 1393
HincII GTYRAC 1 cut(s) 1022
HindII GTYRAC 1 cut(s) 1022
HinfI GANTC 8 cut(s) 320, 596, 621, 773, 1041, 1189, 1210, 1252
HpaII CCGG 9 cut(s) 695, 910, 1101, 1193, 1214, 1228, 1242, 1306, 1338
HphI GGTGA 6 cut(s) 119, 960, 1090, 1193, 1214, 1256
Hpy166II GTNNAC 3 cut(s) 211, 781, 1022
Hpy188I TCNGA 5 cut(s) 293, 582, 934, 1028, 1046
Hpy188III TCNNGA 9 cut(s) 22, 158, 391, 501, 593, 668, 717, 731, 951
Hpy8I GTNNAC 3 cut(s) 211, 781, 1022
Hpy99I CGWCG 4 cut(s) 55, 58, 957, 1133
HpyAV CCTTC 8 cut(s) 52, 61, 178, 298, 436, 717, 1070, 1156
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4IV ACGT 2 cut(s) 1072, 1322
HpyCH4V TGCA 6 cut(s) 167, 197, 452, 535, 612, 682
HpyF10VI GCNNNNNNNGC 8 cut(s) 36, 134, 139, 194, 275, 935, 1386, 1390
HpyF3I CTNAG 7 cut(s) 138, 401, 444, 579, 657, 711, 1396
HpySE526I ACGT 2 cut(s) 1072, 1322
HspAI GCGC 1 cut(s) 1393
Kzo9I GATC 9 cut(s) 154, 366, 585, 589, 763, 851, 895, 974, 1134
LmnI GCTCC 3 cut(s) 373, 419, 928
Lsp1109I GCAGC 4 cut(s) 34, 151, 434, 1208
LweI GCATC 1 cut(s) 643
MaeI CTAG 1 cut(s) 251
MaeII ACGT 2 cut(s) 1072, 1322
MaeIII GTNAC 3 cut(s) 1181, 1202, 1244
MalI GATC 9 cut(s) 156, 368, 587, 591, 765, 853, 897, 976, 1136
MboI GATC 9 cut(s) 154, 366, 585, 589, 763, 851, 895, 974, 1134
MflI RGATCY 2 cut(s) 154, 851
MhlI GDGCHC 4 cut(s) 220, 730, 845, 961
MluCI AATT 7 cut(s) 514, 734, 746, 887, 1091, 1112, 1160
MlyI GAGTC 5 cut(s) 314, 590, 615, 782, 1050
MseI TTAA 2 cut(s) 486, 1376
MspA1I CMGCKG 1 cut(s) 1238
MspI CCGG 9 cut(s) 695, 910, 1101, 1193, 1214, 1228, 1242, 1306, 1338
MspR9I CCNGG 5 cut(s) 105, 476, 696, 1306, 1339
Mva1269I GAATGC 1 cut(s) 905
MvaI CCWGG 2 cut(s) 105, 476
MvnI CGCG 2 cut(s) 917, 1393
MwoI GCNNNNNNNGC 8 cut(s) 36, 134, 139, 194, 275, 935, 1386, 1390
NciI CCSGG 3 cut(s) 696, 1306, 1339
NdeII GATC 9 cut(s) 154, 366, 585, 589, 763, 851, 895, 974, 1134
NlaIV GGNNCC 7 cut(s) 99, 156, 700, 842, 843, 924, 1058
NmeAIII GCCGAG 1 cut(s) 1390
NmuCI GTSAC 3 cut(s) 1181, 1202, 1244
NspI RCATGY 4 cut(s) 137, 535, 612, 1384
NspV TTCGAA 1 cut(s) 873
PaeI GCATGC 3 cut(s) 137, 612, 1384
PagI TCATGA 1 cut(s) 730
PaqCI CACCTGC 1 cut(s) 1190
PcsI WCGNNNNNNNCGW 2 cut(s) 958, 1137
PctI GAATGC 1 cut(s) 905
PfeI GAWTC 3 cut(s) 1189, 1210, 1252
PflFI GACNNNGTC 1 cut(s) 712
PkrI GCNGC 8 cut(s) 49, 166, 424, 644, 1177, 1198, 1240, 1402
PleI GAGTC 5 cut(s) 314, 590, 615, 781, 1049
PpsI GAGTC 5 cut(s) 314, 590, 615, 781, 1049
Psp124BI GAGCTC 1 cut(s) 961
Psp6I CCWGG 2 cut(s) 103, 474
PspFI CCCAGC 1 cut(s) 1280
PspGI CCWGG 2 cut(s) 103, 474
PspN4I GGNNCC 7 cut(s) 99, 156, 700, 842, 843, 924, 1058
PspOMI GGGCCC 1 cut(s) 841
PstNI CAGNNNCTG 1 cut(s) 164
PsuI RGATCY 2 cut(s) 154, 851
PsyI GACNNNGTC 1 cut(s) 712
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SacI GAGCTC 1 cut(s) 961
SaqAI TTAA 2 cut(s) 486, 1376
SatI GCNGC 8 cut(s) 48, 165, 423, 643, 1176, 1197, 1239, 1401
Sau3AI GATC 9 cut(s) 154, 366, 585, 589, 763, 851, 895, 974, 1134
SchI GAGTC 5 cut(s) 314, 590, 615, 782, 1050
ScrFI CCNGG 5 cut(s) 105, 476, 696, 1306, 1339
SduI GDGCHC 4 cut(s) 220, 730, 845, 961
SfaNI GCATC 1 cut(s) 643
SfuI TTCGAA 1 cut(s) 873
SinI GGWCC 3 cut(s) 753, 1028, 1357
SmlI CTYRAG 4 cut(s) 389, 668, 770, 818
SmoI CTYRAG 4 cut(s) 389, 668, 770, 818
SphI GCATGC 3 cut(s) 137, 612, 1384
Sse9I AATT 7 cut(s) 514, 734, 746, 887, 1091, 1112, 1160
SsiI CCGC 6 cut(s) 643, 767, 917, 1175, 1238, 1400
SspI AATATT 1 cut(s) 1290
SspMI CTAG 1 cut(s) 251
SstI GAGCTC 1 cut(s) 961
StyD4I CCNGG 5 cut(s) 103, 474, 694, 1304, 1337
StyI CCWWGG 2 cut(s) 415, 994
TaaI ACNGT 1 cut(s) 215
TaiI ACGT 2 cut(s) 1075, 1325
TasI AATT 7 cut(s) 514, 734, 746, 887, 1091, 1112, 1160
TatI WGTACW 1 cut(s) 348
TauI GCSGC 4 cut(s) 645, 1178, 1241, 1403
TfiI GAWTC 3 cut(s) 1189, 1210, 1252
Tru1I TTAA 2 cut(s) 486, 1376
Tru9I TTAA 2 cut(s) 486, 1376
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 3 cut(s) 1181, 1202, 1244
TseI GCWGC 4 cut(s) 47, 164, 422, 1196
Tsp45I GTSAC 3 cut(s) 1181, 1202, 1244
TspDTI ATGAA 5 cut(s) 257, 663, 747, 845, 849
TspGWI ACGGA 1 cut(s) 766
TspRI CASTG 1 cut(s) 220
Tth111I GACNNNGTC 1 cut(s) 712
VpaK11BI GGWCC 3 cut(s) 753, 1028, 1357
XagI CCTNNNNNAGG 2 cut(s) 1035, 1364
XapI RAATTY 2 cut(s) 514, 1160
XceI RCATGY 4 cut(s) 137, 535, 612, 1384
XmiI GTMKAC 1 cut(s) 210
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.