Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0011791

Physical Location & Seq

Genomic Coordinates Reverse (-)

46299281 .. 46302334

Gene Structure 3054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG285000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCCGTTGTGATGAAGCAACTAGACAGAACTGAAGAAGCCATTGAAGCTATCAAGTCCTTCAGAGGCCTTTGCTCTAAACAAGCACAAGACTCGCTGGATAATGTTCTCATCGACTTGTACAAGAAGTGTGGGAAGATCGAGGAGCAGATTGACTTGCTCAAGAGGAAGCTGAGGTTGATATACCAAGGAGCAGCCTTCAATGGCAGACAGACTAAGACTGCACGCTCTCATGGAAAGAAGTTCCAGGTCTCTGTTAAGCAAGAAACCTCCAGATTATTGGGAAATTTGGGATGGGCATACATGCAGAAAGGAAACTATATGATGGCAGAGGTAGTGTATCGAAAAGCTCAGATGATCGATCCTGACTCCAATAAGGCATGCAACTTAGGACTCTCCCTAATCAAACAGGGCCGCTATGAAGATGCTCAGTTGGTTCTTGAGGATGTATTGCAAAGTCGTCTTCCGGGTGCCGATGAGACTAAGTCGAGAAGAAGGGCTCATGAATTGCTAATGGAATTGAGGTCCATACATGATCCGCCTGAGTCCGTGGACTTATTGGGGATAGATGATGATTTTGTCAAGGGGCTTGAGCAGTTGATGAATGAATGGGGCCCTTTTAGATCCAAGAGGCTTCCCATCTTCGAAGAAATCTCTCAATTTAGAGATCAAGTGGCATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006109 GO:0006792 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010438 GO:0010439 GO:0010675 GO:0017053 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0042594 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043455 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051716 GO:0062012 GO:0065007 GO:0070013 GO:0071496 GO:0080090 GO:0090568 GO:1900376

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_8

Protein Analysis

227

Amino Acids

26.02

Weight (kDa)

8.58

Isoelectric Point (pI)

55.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	92 - 123	1.1e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48850
fragaria_vesca	FvH4_2g19310 FvH4_2g19310
malus_domestica	MD05G1178100.v1.1 MD10G1166300.v1.1
prunus_persica	Prupe.8G204700_v2.0.a1
pyrus_communis	pycom05g16440 pycom10g14340
rosa_chinensis	RchiOBHm_Chr6g0285121
rosa_laevigata	RLG00000012671
rosa_multiflora	Rmu_sc0002535.1_g000032 Rmu_sc0003797.1_g000006
rosa_roxburghii	Rroxscaffold_7G00183650 Rroxscaffold_7G00184020
rosa_rugosa	Rorug06G0171300
rosa_samantha	Rh6BG283100 Rh6CG285000 Rh6DG278100
rosa_wichuraiana	Rw6G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	470
AciI	CCGC	2 cut(s)	415, 539
AclWI	GGATC	3 cut(s)	356, 530, 618
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	286
AcuI	CTGAAG	2 cut(s)	46, 54
AfaI	GTAC	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	47, 202
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	3 cut(s)	50, 172, 350
AluI	AGCT	3 cut(s)	50, 172, 350
Alw26I	GTCTC	2 cut(s)	256, 473
AlwI	GGATC	3 cut(s)	356, 530, 618
AoxI	GGCC	4 cut(s)	3, 67, 412, 613
ApaI	GGGCCC	1 cut(s)	617
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	286
AspS9I	GGNCC	4 cut(s)	412, 525, 613, 614
AsuC2I	CCSGG	1 cut(s)	468
AsuII	TTCGAA	1 cut(s)	645
AvaII	GGWCC	1 cut(s)	525
BaeGI	GKGCMC	1 cut(s)	617
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	2 cut(s)	502, 617
BbsI	GAAGAC	1 cut(s)	455
BbvCI	CCTCAGC	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	3 cut(s)	288, 319, 647
BcgI	CGANNNNNNTGC	2 cut(s)	75, 109
BciT130I	CCWGG	1 cut(s)	248
BcnI	CCSGG	1 cut(s)	468
BcoDI	GTCTC	2 cut(s)	256, 473
BfaI	CTAG	1 cut(s)	23
BisI	GCNGC	2 cut(s)	195, 415
BlsI	GCNGC	2 cut(s)	196, 416
Bme1390I	CCNGG	2 cut(s)	248, 468
Bme18I	GGWCC	1 cut(s)	525
BmgT120I	GGNCC	4 cut(s)	412, 525, 613, 614
BmiI	GGNNCC	3 cut(s)	472, 614, 615
BmrFI	CCNGG	2 cut(s)	248, 468
BmsI	GCATC	1 cut(s)	415
BpiI	GAAGAC	1 cut(s)	455
BpmI	CTGGAG	1 cut(s)	256
Bpu10I	CCTNAGC	1 cut(s)	173
Bpu14I	TTCGAA	1 cut(s)	645
BpuEI	CTTGAG	3 cut(s)	146, 461, 611
BpuMI	CCSGG	1 cut(s)	468
Bsa29I	ATCGAT	1 cut(s)	360
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	2 cut(s)	187, 549
BseBI	CCWGG	1 cut(s)	248
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	187, 549
BseGI	GGATG	2 cut(s)	299, 451
BseMII	CTCAG	4 cut(s)	164, 365, 443, 534
BseRI	GAGGAG	1 cut(s)	158
BseSI	GKGCMC	1 cut(s)	617
BseXI	GCAGC	1 cut(s)	206
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	4 cut(s)	5, 69, 414, 615
BshNI	GGYRCC	1 cut(s)	470
BshVI	ATCGAT	1 cut(s)	360
BsiSI	CCGG	1 cut(s)	467
BsmAI	GTCTC	2 cut(s)	256, 473
BsnI	GGCC	4 cut(s)	5, 69, 414, 615
Bso31I	GGTCTC	1 cut(s)	256
Bsp119I	TTCGAA	1 cut(s)	645
Bsp120I	GGGCCC	1 cut(s)	613
Bsp1286I	GDGCHC	2 cut(s)	502, 617
Bsp1407I	TGTACA	1 cut(s)	120
Bsp143I	GATC	6 cut(s)	138, 357, 361, 535, 623, 667
BspACI	CCGC	2 cut(s)	415, 539
BspANI	GGCC	4 cut(s)	5, 69, 414, 615
BspCNI	CTCAG	4 cut(s)	165, 364, 442, 535
BspDI	ATCGAT	1 cut(s)	360
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	3 cut(s)	472, 614, 615
BspPI	GGATC	3 cut(s)	356, 530, 618
BspT104I	TTCGAA	1 cut(s)	645
BspT107I	GGYRCC	1 cut(s)	470
BspTNI	GGTCTC	1 cut(s)	256
BsrGI	TGTACA	1 cut(s)	120
BssECI	CCNNGG	2 cut(s)	187, 549
BssMI	GATC	6 cut(s)	138, 357, 361, 535, 623, 667
BssT1I	CCWWGG	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	248
BstAUI	TGTACA	1 cut(s)	120
BstBI	TTCGAA	1 cut(s)	645
BstC8I	GCNNGC	2 cut(s)	226, 382
BstDEI	CTNAG	7 cut(s)	173, 216, 351, 388, 429, 483, 543
BstDSI	CCRYGG	1 cut(s)	549
BstF5I	GGATG	2 cut(s)	299, 451
BstKTI	GATC	6 cut(s)	141, 360, 364, 538, 626, 670
BstMAI	GTCTC	2 cut(s)	256, 473
BstMBI	GATC	6 cut(s)	138, 357, 361, 535, 623, 667
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	248
BstNSI	RCATGY	3 cut(s)	307, 384, 681
BstSCI	CCNGG	2 cut(s)	246, 466
BstSLI	GKGCMC	1 cut(s)	617
BstV1I	GCAGC	1 cut(s)	206
BstV2I	GAAGAC	1 cut(s)	455
BstX2I	RGATCY	1 cut(s)	623
BstXI	CCANNNNNNTGG	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	623
Bsu15I	ATCGAT	1 cut(s)	360
BsuRI	GGCC	4 cut(s)	5, 69, 414, 615
BsuTUI	ATCGAT	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	549
BtsCI	GGATG	2 cut(s)	299, 451
Cac8I	GCNNGC	2 cut(s)	226, 382
CciI	TCATGA	1 cut(s)	502
Cfr13I	GGNCC	4 cut(s)	412, 525, 613, 614
ClaI	ATCGAT	1 cut(s)	360
Csp6I	GTAC	1 cut(s)	121
CspCI	CAANNNNNGTGG	2 cut(s)	112, 147
CviAII	CATG	6 cut(s)	233, 304, 381, 503, 533, 678
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	7 cut(s)	173, 216, 351, 388, 429, 483, 543
DpnI	GATC	6 cut(s)	140, 359, 363, 537, 625, 669
DpnII	GATC	6 cut(s)	138, 357, 361, 535, 623, 667
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	528
Eco130I	CCWWGG	1 cut(s)	187
Eco147I	AGGCCT	1 cut(s)	69
Eco24I	GRGCYC	2 cut(s)	502, 617
Eco31I	GGTCTC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	525
Eco57I	CTGAAG	2 cut(s)	46, 54
EcoO109I	RGGNCCY	2 cut(s)	613, 614
EcoRII	CCWGG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	187
EcoT38I	GRGCYC	2 cut(s)	502, 617
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	6 cut(s)	236, 307, 384, 506, 536, 681
FatI	CATG	6 cut(s)	232, 303, 380, 502, 532, 677
Fnu4HI	GCNGC	2 cut(s)	195, 415
FokI	GGATG	2 cut(s)	306, 458
FriOI	GRGCYC	2 cut(s)	502, 617
Fsp4HI	GCNGC	2 cut(s)	195, 415
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	2 cut(s)	195, 415
GsuI	CTGGAG	1 cut(s)	256
HaeIII	GGCC	4 cut(s)	5, 69, 414, 615
HapII	CCGG	1 cut(s)	467
Hin1II	CATG	6 cut(s)	236, 307, 384, 506, 536, 681
HinfI	GANTC	4 cut(s)	92, 368, 393, 545
HpaII	CCGG	1 cut(s)	467
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	2 cut(s)	65, 354
Hpy188III	TCNNGA	6 cut(s)	163, 273, 365, 440, 489, 503
Hpy8I	GTNNAC	1 cut(s)	553
HpyAV	CCTTC	3 cut(s)	70, 208, 489
HpyCH4V	TGCA	4 cut(s)	224, 307, 384, 454
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	7 cut(s)	173, 216, 351, 388, 429, 483, 543
Hsp92II	CATG	6 cut(s)	236, 307, 384, 506, 536, 681
Kzo9I	GATC	6 cut(s)	138, 357, 361, 535, 623, 667
LmnI	GCTCC	2 cut(s)	145, 191
LpnPI	CCDG	8 cut(s)	83, 233, 260, 286, 378, 395, 480, 555
Lsp1109I	GCAGC	1 cut(s)	206
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	1 cut(s)	23
MalI	GATC	6 cut(s)	140, 359, 363, 537, 625, 669
MboI	GATC	6 cut(s)	138, 357, 361, 535, 623, 667
MboII	GAAGA	7 cut(s)	47, 148, 434, 455, 504, 634, 659
MflI	RGATCY	1 cut(s)	623
MhlI	GDGCHC	2 cut(s)	502, 617
MluCI	AATT	4 cut(s)	286, 506, 518, 659
MlyI	GAGTC	4 cut(s)	86, 362, 387, 554
MnlI	CCTC	9 cut(s)	59, 136, 159, 168, 280, 325, 436, 516, 624
MseI	TTAA	2 cut(s)	258, 682
MspI	CCGG	1 cut(s)	467
MspR9I	CCNGG	2 cut(s)	248, 468
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	47
NciI	CCSGG	1 cut(s)	468
NdeII	GATC	6 cut(s)	138, 357, 361, 535, 623, 667
NlaIII	CATG	6 cut(s)	236, 307, 384, 506, 536, 681
NlaIV	GGNNCC	3 cut(s)	472, 614, 615
NspI	RCATGY	3 cut(s)	307, 384, 681
NspV	TTCGAA	1 cut(s)	645
PaeI	GCATGC	1 cut(s)	384
PagI	TCATGA	1 cut(s)	502
PceI	AGGCCT	1 cut(s)	69
PflFI	GACNNNGTC	1 cut(s)	484
PkrI	GCNGC	2 cut(s)	196, 416
PleI	GAGTC	4 cut(s)	86, 362, 387, 553
PpsI	GAGTC	4 cut(s)	86, 362, 387, 553
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	3 cut(s)	472, 614, 615
PspOMI	GGGCCC	1 cut(s)	613
PspPI	GGNCC	4 cut(s)	412, 525, 613, 614
PsuI	RGATCY	1 cut(s)	623
PsyI	GACNNNGTC	1 cut(s)	484
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SaqAI	TTAA	2 cut(s)	258, 682
SatI	GCNGC	2 cut(s)	195, 415
Sau3AI	GATC	6 cut(s)	138, 357, 361, 535, 623, 667
Sau96I	GGNCC	4 cut(s)	412, 525, 613, 614
SchI	GAGTC	4 cut(s)	86, 362, 387, 554
ScrFI	CCNGG	2 cut(s)	248, 468
SduI	GDGCHC	2 cut(s)	502, 617
SetI	ASST	8 cut(s)	52, 174, 179, 252, 272, 336, 352, 527
SfaNI	GCATC	1 cut(s)	415
SfuI	TTCGAA	1 cut(s)	645
SinI	GGWCC	1 cut(s)	525
SmlI	CTYRAG	3 cut(s)	161, 440, 590
SmoI	CTYRAG	3 cut(s)	161, 440, 590
SphI	GCATGC	1 cut(s)	384
Sse9I	AATT	4 cut(s)	286, 506, 518, 659
SseBI	AGGCCT	1 cut(s)	69
SsiI	CCGC	2 cut(s)	415, 539
SspMI	CTAG	1 cut(s)	23
StuI	AGGCCT	1 cut(s)	69
StyD4I	CCNGG	2 cut(s)	246, 466
StyI	CCWWGG	1 cut(s)	187
TaqI	TCGA	6 cut(s)	114, 141, 343, 360, 488, 645
TasI	AATT	4 cut(s)	286, 506, 518, 659
TatI	WGTACW	1 cut(s)	120
TauI	GCSGC	1 cut(s)	417
Tru1I	TTAA	2 cut(s)	258, 682
Tru9I	TTAA	2 cut(s)	258, 682
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	5 cut(s)	29, 435, 519, 617, 621
TspGWI	ACGGA	1 cut(s)	538
Tth111I	GACNNNGTC	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	525
XapI	RAATTY	1 cut(s)	286
XceI	RCATGY	3 cut(s)	307, 384, 681
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.