Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011791

Physical Location & Seq

Genomic Coordinates Reverse (-)

19185934 .. 19189264

Gene Structure 3331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G204700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAAGGCAGTTCCAAGACGAGCAGCCCAAAGGGGAAGAAAGATGATCTCTACCATGTTATTCACAAGGTTCCTTCTGGTGATAGCCCTTATGTTAGGGCCAAACATGCCCAGCTAGTCGAAAAGGATCCAGAGGCTGCAATAGTTTTGTTTTGGAAGGCAATAAATGCAGGAGACAGAGTAGACAGTGCCCTAAAAGACATGGCTGTAGTGATGAAGCAACTGGACAGAACTGGAGAAGCCATTGAAGCTGTCAAGTCTTTCAGAGGCCTCTGCTCTAAACAGGCCCAAGACTCACTTGACAATGTCCTCATTGACTTGTACAAGAAATGTGGCAAAATTGAGGAGCAAATTGACTTGCTCAAGAGAAAGCTAAGGCTTATATACCAAGGAGCTGCCTTCAATGGAAGACCCACCAAAACCGCGCGCTCTCACGGAAAGAAGTTTCAAGTTTCGGTTACGCAAGAGACTTCAAGATTACTGGGCAATTTGGGCTGGGCCTATATGCAAAAGGGAAACTTCATGATGGCGGAGGTAGTGTACCGGAAAGCCCAAATGATCGACCCGGACTCGAACAAGGCCTGTAACTTGGGCCTTTGCCTGATCAAACAGGGCCGGTACGAAGATGCCCGTTTGGTCCTTGAAGATGTTTTGGAAAGTAGACTTCCGGGCTCTGATGAGAGCAGGTCAAGGAAACGAGCCGAGGAGTTGCTAATGGAGCTGAGGTCCATGCATCCTCCACCTGAGTCGTTCGATCTATTGGGCCTAGATGATGATTTGGTCAACGGGCTTGAGCAGTTGATGAATGAAGGGGGCCCAGTTAGATCAAAGAGGCTCCCCATATTTGAAGAAATCTCTCAATTTAGAGATCAAGTGGCATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006109 GO:0006792 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010438 GO:0010439 GO:0010675 GO:0017053 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0042594 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043455 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051716 GO:0062012 GO:0065007 GO:0070013 GO:0071496 GO:0080090 GO:0090568 GO:1900376

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_8

Protein Analysis

295

Amino Acids

33.04

Weight (kDa)

8.46

Isoelectric Point (pI)

52.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48850
fragaria_vesca	FvH4_2g19310 FvH4_2g19310
malus_domestica	MD05G1178100.v1.1 MD10G1166300.v1.1
prunus_persica	Prupe.8G204700_v2.0.a1
pyrus_communis	pycom05g16440 pycom10g14340
rosa_chinensis	RchiOBHm_Chr6g0285121
rosa_laevigata	RLG00000012671
rosa_multiflora	Rmu_sc0002535.1_g000032 Rmu_sc0003797.1_g000006
rosa_roxburghii	Rroxscaffold_7G00183650 Rroxscaffold_7G00184020
rosa_rugosa	Rorug06G0171300
rosa_samantha	Rh6BG283100 Rh6CG285000 Rh6DG278100
rosa_wichuraiana	Rw6G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	675
AccI	GTMKAC	2 cut(s)	183, 661
AccII	CGCG	2 cut(s)	425, 427
AciI	CCGC	2 cut(s)	423, 530
AclWI	GGATC	2 cut(s)	122, 135
AfaI	GTAC	3 cut(s)	323, 542, 620
AgsI	TTSAA	6 cut(s)	248, 403, 449, 474, 644, 848
AluBI	AGCT	5 cut(s)	115, 251, 373, 395, 721
AluI	AGCT	5 cut(s)	115, 251, 373, 395, 721
Alw26I	GTCTC	2 cut(s)	168, 461
AlwI	GGATC	2 cut(s)	122, 135
AlwNI	CAGNNNCTG	1 cut(s)	137
AoxI	GGCC	9 cut(s)	99, 268, 285, 498, 579, 592, 613, 763, 814
ApaI	GGGCCC	1 cut(s)	818
ApeKI	GCWGC	3 cut(s)	24, 137, 395
AspLEI	GCGC	2 cut(s)	427, 429
AsuC2I	CCSGG	2 cut(s)	566, 669
AsuHPI	GGTGA	1 cut(s)	92
AvaII	GGWCC	2 cut(s)	637, 726
BaeGI	GKGCMC	2 cut(s)	193, 818
BamHI	GGATCC	1 cut(s)	127
BanII	GRGCYC	2 cut(s)	674, 818
BbsI	GAAGAC	1 cut(s)	415
BbvCI	CCTCAGC	1 cut(s)	722
BbvI	GCAGC	3 cut(s)	36, 124, 382
BccI	CCATC	1 cut(s)	520
BclI	TGATCA	1 cut(s)	603
BcnI	CCSGG	2 cut(s)	566, 669
BcoDI	GTCTC	2 cut(s)	168, 461
BfaI	CTAG	2 cut(s)	116, 767
BfmI	CTRYAG	1 cut(s)	207
BfuAI	ACCTGC	1 cut(s)	675
BisI	GCNGC	3 cut(s)	25, 138, 396
BlsI	GCNGC	3 cut(s)	26, 139, 397
Bme1390I	CCNGG	2 cut(s)	566, 669
Bme18I	GGWCC	2 cut(s)	637, 726
BmiI	GGNNCC	5 cut(s)	72, 129, 815, 816, 836
BmrFI	CCNGG	2 cut(s)	566, 669
BmrI	ACTGGG	2 cut(s)	491, 812
BmsI	GCATC	2 cut(s)	616, 742
BmuI	ACTGGG	2 cut(s)	491, 812
BpiI	GAAGAC	1 cut(s)	415
BpmI	CTGGAG	1 cut(s)	255
Bpu10I	CCTNAGC	2 cut(s)	374, 722
BpuEI	CTTGAG	2 cut(s)	347, 812
BpuMI	CCSGG	2 cut(s)	566, 669
BsaJI	CCNNGG	2 cut(s)	388, 702
BsaWI	WCCGGW	1 cut(s)	543
BsaXI	ACNNNNNCTCC	6 cut(s)	165, 195, 524, 554, 710, 740
Bse118I	RCCGGY	1 cut(s)	615
Bse1I	ACTGG	4 cut(s)	228, 238, 486, 818
BseDI	CCNNGG	2 cut(s)	388, 702
BseGI	GGATG	1 cut(s)	733
BseMII	CTCAG	2 cut(s)	713, 735
BseNI	ACTGG	4 cut(s)	228, 238, 486, 818
BsePI	GCGCGC	1 cut(s)	425
BseRI	GAGGAG	2 cut(s)	359, 719
BseSI	GKGCMC	2 cut(s)	193, 818
BseXI	GCAGC	3 cut(s)	36, 124, 382
BseYI	CCCAGC	2 cut(s)	111, 495
Bsh1236I	CGCG	2 cut(s)	425, 427
BshFI	GGCC	9 cut(s)	101, 270, 287, 500, 581, 594, 615, 765, 816
BsiSI	CCGG	4 cut(s)	544, 566, 616, 668
BsmAI	GTCTC	2 cut(s)	168, 461
BsnI	GGCC	9 cut(s)	101, 270, 287, 500, 581, 594, 615, 765, 816
Bsp120I	GGGCCC	1 cut(s)	814
Bsp1286I	GDGCHC	3 cut(s)	193, 674, 818
Bsp1407I	TGTACA	1 cut(s)	321
Bsp143I	GATC	7 cut(s)	46, 127, 558, 603, 754, 824, 868
BspACI	CCGC	2 cut(s)	423, 530
BspANI	GGCC	9 cut(s)	101, 270, 287, 500, 581, 594, 615, 765, 816
BspCNI	CTCAG	2 cut(s)	714, 736
BspFNI	CGCG	2 cut(s)	425, 427
BspHI	TCATGA	1 cut(s)	522
BspLI	GGNNCC	5 cut(s)	72, 129, 815, 816, 836
BspMI	ACCTGC	1 cut(s)	675
BspPI	GGATC	2 cut(s)	122, 135
BsrFI	RCCGGY	1 cut(s)	615
BsrGI	TGTACA	1 cut(s)	321
BsrI	ACTGG	4 cut(s)	228, 238, 486, 818
BssAI	RCCGGY	1 cut(s)	615
BssECI	CCNNGG	2 cut(s)	388, 702
BssHII	GCGCGC	1 cut(s)	425
BssMI	GATC	7 cut(s)	46, 127, 558, 603, 754, 824, 868
BssT1I	CCWWGG	1 cut(s)	388
Bst4CI	ACNGT	1 cut(s)	188
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstAUI	TGTACA	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	427
BstDEI	CTNAG	3 cut(s)	374, 722, 744
BstF5I	GGATG	1 cut(s)	733
BstFNI	CGCG	2 cut(s)	425, 427
BstHHI	GCGC	2 cut(s)	427, 429
BstKTI	GATC	7 cut(s)	49, 130, 561, 606, 757, 827, 871
BstMAI	GTCTC	2 cut(s)	168, 461
BstMBI	GATC	7 cut(s)	46, 127, 558, 603, 754, 824, 868
BstMWI	GCNNNNNNNGC	5 cut(s)	107, 167, 248, 492, 718
BstNSI	RCATGY	2 cut(s)	110, 882
BstSCI	CCNGG	2 cut(s)	564, 667
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	2 cut(s)	193, 818
BstUI	CGCG	2 cut(s)	425, 427
BstV1I	GCAGC	3 cut(s)	36, 124, 382
BstV2I	GAAGAC	1 cut(s)	415
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuRI	GGCC	9 cut(s)	101, 270, 287, 500, 581, 594, 615, 765, 816
BtsCI	GGATG	1 cut(s)	733
BtsIMutI	CAGTG	1 cut(s)	193
BveI	ACCTGC	1 cut(s)	675
Cac8I	GCNNGC	1 cut(s)	427
CaiI	CAGNNNCTG	1 cut(s)	137
CciI	TCATGA	1 cut(s)	522
CfoI	GCGC	2 cut(s)	427, 429
Cfr10I	RCCGGY	1 cut(s)	615
Csp6I	GTAC	3 cut(s)	322, 541, 619
CspCI	CAANNNNNGTGG	2 cut(s)	313, 348
CviAII	CATG	6 cut(s)	56, 107, 202, 523, 730, 879
CviQI	GTAC	3 cut(s)	322, 541, 619
DdeI	CTNAG	3 cut(s)	374, 722, 744
DpnI	GATC	7 cut(s)	48, 129, 560, 605, 756, 826, 870
DpnII	GATC	7 cut(s)	46, 127, 558, 603, 754, 824, 868
EciI	GGCGGA	1 cut(s)	545
Eco130I	CCWWGG	1 cut(s)	388
Eco147I	AGGCCT	2 cut(s)	270, 581
Eco24I	GRGCYC	2 cut(s)	674, 818
Eco47I	GGWCC	2 cut(s)	637, 726
EcoO109I	RGGNCCY	1 cut(s)	814
EcoT14I	CCWWGG	1 cut(s)	388
EcoT22I	ATGCAT	1 cut(s)	735
EcoT38I	GRGCYC	2 cut(s)	674, 818
ErhI	CCWWGG	1 cut(s)	388
FaeI	CATG	6 cut(s)	59, 110, 205, 526, 733, 882
FalI	AAGNNNNNCTT	4 cut(s)	282, 314, 503, 535
FatI	CATG	6 cut(s)	55, 106, 201, 522, 729, 878
FbaI	TGATCA	1 cut(s)	603
FblI	GTMKAC	2 cut(s)	183, 661
Fnu4HI	GCNGC	3 cut(s)	25, 138, 396
FokI	GGATG	1 cut(s)	720
FriOI	GRGCYC	2 cut(s)	674, 818
Fsp4HI	GCNGC	3 cut(s)	25, 138, 396
FspBI	CTAG	2 cut(s)	116, 767
GlaI	GCGC	2 cut(s)	426, 428
GluI	GCNGC	3 cut(s)	25, 138, 396
GsaI	CCCAGC	2 cut(s)	115, 499
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	9 cut(s)	101, 270, 287, 500, 581, 594, 615, 765, 816
HapII	CCGG	4 cut(s)	544, 566, 616, 668
HhaI	GCGC	2 cut(s)	427, 429
Hin1II	CATG	6 cut(s)	59, 110, 205, 526, 733, 882
Hin6I	GCGC	2 cut(s)	425, 427
HinP1I	GCGC	2 cut(s)	425, 427
HincII	GTYRAC	1 cut(s)	784
HindII	GTYRAC	1 cut(s)	784
HinfI	GANTC	3 cut(s)	293, 569, 746
HpaII	CCGG	4 cut(s)	544, 566, 616, 668
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	4 cut(s)	184, 541, 662, 784
Hpy188I	TCNGA	2 cut(s)	266, 676
Hpy188III	TCNNGA	4 cut(s)	131, 364, 474, 523
Hpy8I	GTNNAC	4 cut(s)	184, 541, 662, 784
HpyAV	CCTTC	4 cut(s)	84, 151, 409, 803
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4V	TGCA	4 cut(s)	140, 170, 508, 733
HpyF10VI	GCNNNNNNNGC	5 cut(s)	107, 167, 248, 492, 718
HpyF3I	CTNAG	3 cut(s)	374, 722, 744
Hsp92II	CATG	6 cut(s)	59, 110, 205, 526, 733, 882
HspAI	GCGC	2 cut(s)	425, 427
Ksp22I	TGATCA	1 cut(s)	603
Kzo9I	GATC	7 cut(s)	46, 127, 558, 603, 754, 824, 868
LmnI	GCTCC	4 cut(s)	346, 392, 718, 840
Lsp1109I	GCAGC	3 cut(s)	36, 124, 382
LweI	GCATC	2 cut(s)	616, 742
MaeI	CTAG	2 cut(s)	116, 767
MaeIII	GTNAC	2 cut(s)	457, 584
MalI	GATC	7 cut(s)	48, 129, 560, 605, 756, 826, 870
MboI	GATC	7 cut(s)	46, 127, 558, 603, 754, 824, 868
MboII	GAAGA	5 cut(s)	49, 420, 635, 656, 860
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	3 cut(s)	193, 674, 818
MluCI	AATT	4 cut(s)	339, 351, 487, 860
MlyI	GAGTC	3 cut(s)	287, 563, 755
Mph1103I	ATGCAT	1 cut(s)	735
MseI	TTAA	1 cut(s)	883
MspI	CCGG	4 cut(s)	544, 566, 616, 668
MspR9I	CCNGG	2 cut(s)	566, 669
MvnI	CGCG	2 cut(s)	425, 427
MwoI	GCNNNNNNNGC	5 cut(s)	107, 167, 248, 492, 718
NciI	CCSGG	2 cut(s)	566, 669
NdeII	GATC	7 cut(s)	46, 127, 558, 603, 754, 824, 868
NlaIII	CATG	6 cut(s)	59, 110, 205, 526, 733, 882
NlaIV	GGNNCC	5 cut(s)	72, 129, 815, 816, 836
NmeAIII	GCCGAG	1 cut(s)	727
NsiI	ATGCAT	1 cut(s)	735
NspI	RCATGY	2 cut(s)	110, 882
PagI	TCATGA	1 cut(s)	522
PauI	GCGCGC	1 cut(s)	425
PceI	AGGCCT	2 cut(s)	270, 581
PflFI	GACNNNGTC	1 cut(s)	305
PkrI	GCNGC	3 cut(s)	26, 139, 397
PleI	GAGTC	3 cut(s)	287, 563, 754
PpsI	GAGTC	3 cut(s)	287, 563, 754
PspFI	CCCAGC	2 cut(s)	111, 495
PspN4I	GGNNCC	5 cut(s)	72, 129, 815, 816, 836
PspOMI	GGGCCC	1 cut(s)	814
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	127
PsyI	GACNNNGTC	1 cut(s)	305
PteI	GCGCGC	1 cut(s)	425
RsaI	GTAC	3 cut(s)	323, 542, 620
RsaNI	GTAC	3 cut(s)	322, 541, 619
SaqAI	TTAA	1 cut(s)	883
SatI	GCNGC	3 cut(s)	25, 138, 396
Sau3AI	GATC	7 cut(s)	46, 127, 558, 603, 754, 824, 868
SchI	GAGTC	3 cut(s)	287, 563, 755
ScrFI	CCNGG	2 cut(s)	566, 669
SduI	GDGCHC	3 cut(s)	193, 674, 818
SfaNI	GCATC	2 cut(s)	616, 742
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	2 cut(s)	637, 726
SmlI	CTYRAG	2 cut(s)	362, 791
SmoI	CTYRAG	2 cut(s)	362, 791
Sse9I	AATT	4 cut(s)	339, 351, 487, 860
SseBI	AGGCCT	2 cut(s)	270, 581
SsiI	CCGC	2 cut(s)	423, 530
SspMI	CTAG	2 cut(s)	116, 767
StuI	AGGCCT	2 cut(s)	270, 581
StyD4I	CCNGG	2 cut(s)	564, 667
StyI	CCWWGG	1 cut(s)	388
TaaI	ACNGT	1 cut(s)	188
TaqI	TCGA	4 cut(s)	120, 561, 572, 753
TasI	AATT	4 cut(s)	339, 351, 487, 860
TatI	WGTACW	1 cut(s)	321
Tru1I	TTAA	1 cut(s)	883
Tru9I	TTAA	1 cut(s)	883
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	3 cut(s)	24, 137, 395
TspDTI	ATGAA	4 cut(s)	230, 511, 818, 822
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	1 cut(s)	193
Tth111I	GACNNNGTC	1 cut(s)	305
VpaK11BI	GGWCC	2 cut(s)	637, 726
XceI	RCATGY	2 cut(s)	110, 882
XmiI	GTMKAC	2 cut(s)	183, 661
XspI	CTAG	2 cut(s)	116, 767
Zsp2I	ATGCAT	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.