RchiOBHm_Chr6g0285121

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011791
Physical Location & Seq
Reverse (-)
48470144 .. 48473194
3051 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25573

Sequence Viewer

Length: 915 bp
ATGGAGGGAATGATGAGTTTCAAGATTGGCAGCAACAGCACTACTGCTGCTGCGACGACGAAGGGGAAGAAGGATGAGCTTTATCATGTTATTCACAAGGTGCCTTCTGGTGATACTCCTTATGTTAGAGCCAAGCATGCTCAGCTTGTCGAAAAGGATCCAGAGGCTGCAATAGTGTTGTTTTGGAAGGCAATAAATGCAGGAGATAGAGTAGACAGTGCCCTAAAGGACATGGCCGTTGTGATGAAGCAACTAGACAGAACTGAAGAAGCCATTGAAGCTATCAAGTCCTTCAGAGGCCTTTGCTCTAAACAAGCACAAGACTCGCTGGATAATGTTCTCATCGACTTGTACAAGAAGTGTGGGAAGATCGAGGAGCAGATTGACTTGCTCAAGAGGAAGCTGAGGTTGATATACCAAGGAGCAGCCTTCAATGGCAGACAGACTAAGACTGCACGCTCTCATGGAAAGAAGTTCCAGGTCTCTGTTAAGCAAGAAACCTCCAGATTATTGGGAAATTTGGGATGGGCATACATGCAGAAAGGAAACTATATGATGGCAGAGGTAGTGTATCGAAAAGCTCAGATGATCGATCCTGACTCCAATAAGGCATGCAACTTAGGACTCTCCCTAATCAAACAGGGCCGCTATGAAGATGCTCAGTTGGTTCTTGAGGATGTATTGCAAAGTCGTCTTCCGGGTGCCGATGAGACTAAGTCGAGAAGAAGGGCTCATGAATTGCTAATGGAATTGAGGTCCATACATGATCCGCCTGAGTCCGTGGACTTATTGGGGATAGATGATGATTTTGTCAAGGGGCTTGAGCAGTTGATGAATGAATGGGGCCCTTTTAGATCCAAGAGGCTTCCCATCTTCGAAGAAATCTCTCAATTTAGAGATCAAGTGGCATGTTAA

Protein Analysis

304

Amino Acids

34.39

Weight (kDa)

8.69

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_1 PF00515 169 - 200 1.6e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011791)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48850
fragaria_vesca FvH4_2g19310 FvH4_2g19310
malus_domestica MD05G1178100.v1.1 MD10G1166300.v1.1
prunus_persica Prupe.8G204700_v2.0.a1
pyrus_communis pycom05g16440 pycom10g14340
rosa_chinensis RchiOBHm_Chr6g0285121
rosa_laevigata RLG00000012671
rosa_multiflora Rmu_sc0002535.1_g000032 Rmu_sc0003797.1_g000006
rosa_roxburghii Rroxscaffold_7G00183650 Rroxscaffold_7G00184020
rosa_rugosa Rorug06G0171300
rosa_samantha Rh6BG283100 Rh6CG285000 Rh6DG278100
rosa_wichuraiana Rw6G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 100, 701
AccI GTMKAC 1 cut(s) 213
AciI CCGC 2 cut(s) 646, 770
AclWI GGATC 5 cut(s) 152, 165, 587, 761, 849
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 1 cut(s) 517
AcuI CTGAAG 2 cut(s) 277, 285
AdeI CACNNNGTG 1 cut(s) 100
AfaI GTAC 1 cut(s) 353
AgsI TTSAA 3 cut(s) 22, 278, 433
AjnI CCWGG 1 cut(s) 477
AluBI AGCT 5 cut(s) 79, 145, 281, 403, 581
AluI AGCT 5 cut(s) 79, 145, 281, 403, 581
Alw26I GTCTC 2 cut(s) 487, 704
AlwI GGATC 5 cut(s) 152, 165, 587, 761, 849
AlwNI CAGNNNCTG 1 cut(s) 167
AoxI GGCC 4 cut(s) 234, 298, 643, 844
ApaI GGGCCC 1 cut(s) 848
ApeKI GCWGC 5 cut(s) 30, 47, 50, 167, 425
ApoI RAATTY 1 cut(s) 517
AspS9I GGNCC 4 cut(s) 643, 756, 844, 845
AsuC2I CCSGG 1 cut(s) 699
AsuHPI GGTGA 1 cut(s) 122
AsuII TTCGAA 1 cut(s) 876
AvaII GGWCC 1 cut(s) 756
BaeGI GKGCMC 2 cut(s) 223, 848
BamHI GGATCC 1 cut(s) 157
BanI GGYRCC 2 cut(s) 100, 701
BanII GRGCYC 2 cut(s) 733, 848
BbsI GAAGAC 1 cut(s) 686
BbvCI CCTCAGC 1 cut(s) 404
BbvI GCAGC 5 cut(s) 34, 37, 42, 154, 437
BccI CCATC 3 cut(s) 519, 550, 878
BceAI ACGGC 1 cut(s) 221
BcgI CGANNNNNNTGC 2 cut(s) 306, 340
BciT130I CCWGG 1 cut(s) 479
BcnI CCSGG 1 cut(s) 699
BcoDI GTCTC 2 cut(s) 487, 704
BfaI CTAG 1 cut(s) 254
BisI GCNGC 6 cut(s) 31, 48, 51, 168, 426, 646
BlpI GCTNAGC 1 cut(s) 141
BlsI GCNGC 6 cut(s) 32, 49, 52, 169, 427, 647
Bme1390I CCNGG 2 cut(s) 479, 699
Bme18I GGWCC 1 cut(s) 756
BmgT120I GGNCC 4 cut(s) 643, 756, 844, 845
BmiI GGNNCC 5 cut(s) 102, 159, 703, 845, 846
BmrFI CCNGG 2 cut(s) 479, 699
BmsI GCATC 1 cut(s) 646
BpiI GAAGAC 1 cut(s) 686
BpmI CTGGAG 1 cut(s) 487
Bpu10I CCTNAGC 1 cut(s) 404
Bpu1102I GCTNAGC 1 cut(s) 141
Bpu14I TTCGAA 1 cut(s) 876
BpuEI CTTGAG 3 cut(s) 377, 692, 842
BpuMI CCSGG 1 cut(s) 699
Bsa29I ATCGAT 1 cut(s) 591
BsaI GGTCTC 1 cut(s) 487
BsaJI CCNNGG 2 cut(s) 418, 780
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
BseBI CCWGG 1 cut(s) 479
BseCI ATCGAT 1 cut(s) 591
BseDI CCNNGG 2 cut(s) 418, 780
BseGI GGATG 3 cut(s) 79, 530, 682
BseMII CTCAG 5 cut(s) 155, 395, 596, 674, 765
BseRI GAGGAG 1 cut(s) 389
BseSI GKGCMC 2 cut(s) 223, 848
BseXI GCAGC 5 cut(s) 34, 37, 42, 154, 437
BsgI GTGCAG 1 cut(s) 438
BshFI GGCC 4 cut(s) 236, 300, 645, 846
BshNI GGYRCC 2 cut(s) 100, 701
BshVI ATCGAT 1 cut(s) 591
BsiSI CCGG 1 cut(s) 698
BsmAI GTCTC 2 cut(s) 487, 704
BsnI GGCC 4 cut(s) 236, 300, 645, 846
Bso31I GGTCTC 1 cut(s) 487
Bsp119I TTCGAA 1 cut(s) 876
Bsp120I GGGCCC 1 cut(s) 844
Bsp1286I GDGCHC 3 cut(s) 223, 733, 848
Bsp1407I TGTACA 1 cut(s) 351
Bsp143I GATC 7 cut(s) 157, 369, 588, 592, 766, 854, 898
Bsp1720I GCTNAGC 1 cut(s) 141
BspACI CCGC 2 cut(s) 646, 770
BspANI GGCC 4 cut(s) 236, 300, 645, 846
BspCNI CTCAG 5 cut(s) 154, 396, 595, 673, 766
BspDI ATCGAT 1 cut(s) 591
BspHI TCATGA 1 cut(s) 733
BspLI GGNNCC 5 cut(s) 102, 159, 703, 845, 846
BspPI GGATC 5 cut(s) 152, 165, 587, 761, 849
BspT104I TTCGAA 1 cut(s) 876
BspT107I GGYRCC 2 cut(s) 100, 701
BspTNI GGTCTC 1 cut(s) 487
BsrGI TGTACA 1 cut(s) 351
BssECI CCNNGG 2 cut(s) 418, 780
BssMI GATC 7 cut(s) 157, 369, 588, 592, 766, 854, 898
BssT1I CCWWGG 1 cut(s) 418
Bst2UI CCWGG 1 cut(s) 479
Bst4CI ACNGT 1 cut(s) 218
BstAPI GCANNNNNTGC 1 cut(s) 197
BstAUI TGTACA 1 cut(s) 351
BstBI TTCGAA 1 cut(s) 876
BstC8I GCNNGC 3 cut(s) 138, 457, 613
BstDEI CTNAG 8 cut(s) 141, 404, 447, 582, 619, 660, 714, 774
BstDSI CCRYGG 1 cut(s) 780
BstF5I GGATG 3 cut(s) 79, 530, 682
BstKTI GATC 7 cut(s) 160, 372, 591, 595, 769, 857, 901
BstMAI GTCTC 2 cut(s) 487, 704
BstMBI GATC 7 cut(s) 157, 369, 588, 592, 766, 854, 898
BstMWI GCNNNNNNNGC 5 cut(s) 36, 137, 142, 197, 278
BstNI CCWGG 1 cut(s) 479
BstNSI RCATGY 4 cut(s) 140, 538, 615, 912
BstSCI CCNGG 2 cut(s) 477, 697
BstSLI GKGCMC 2 cut(s) 223, 848
BstV1I GCAGC 5 cut(s) 34, 37, 42, 154, 437
BstV2I GAAGAC 1 cut(s) 686
BstX2I RGATCY 2 cut(s) 157, 854
BstXI CCANNNNNNTGG 1 cut(s) 511
BstYI RGATCY 2 cut(s) 157, 854
Bsu15I ATCGAT 1 cut(s) 591
BsuRI GGCC 4 cut(s) 236, 300, 645, 846
BsuTUI ATCGAT 1 cut(s) 591
BtgI CCRYGG 1 cut(s) 780
BtsCI GGATG 3 cut(s) 79, 530, 682
BtsIMutI CAGTG 1 cut(s) 223
Cac8I GCNNGC 3 cut(s) 138, 457, 613
CaiI CAGNNNCTG 1 cut(s) 167
CciI TCATGA 1 cut(s) 733
Cfr13I GGNCC 4 cut(s) 643, 756, 844, 845
ClaI ATCGAT 1 cut(s) 591
Csp6I GTAC 1 cut(s) 352
CspCI CAANNNNNGTGG 2 cut(s) 343, 378
CviAII CATG 9 cut(s) 86, 137, 232, 464, 535, 612, 734, 764, 909
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 8 cut(s) 141, 404, 447, 582, 619, 660, 714, 774
DpnI GATC 7 cut(s) 159, 371, 590, 594, 768, 856, 900
DpnII GATC 7 cut(s) 157, 369, 588, 592, 766, 854, 898
DraIII CACNNNGTG 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 234
EciI GGCGGA 1 cut(s) 759
Eco130I CCWWGG 1 cut(s) 418
Eco147I AGGCCT 1 cut(s) 300
Eco24I GRGCYC 2 cut(s) 733, 848
Eco31I GGTCTC 1 cut(s) 487
Eco47I GGWCC 1 cut(s) 756
Eco57I CTGAAG 2 cut(s) 277, 285
EcoO109I RGGNCCY 2 cut(s) 844, 845
EcoRII CCWGG 1 cut(s) 477
EcoT14I CCWWGG 1 cut(s) 418
EcoT38I GRGCYC 2 cut(s) 733, 848
ErhI CCWWGG 1 cut(s) 418
FaeI CATG 9 cut(s) 89, 140, 235, 467, 538, 615, 737, 767, 912
FatI CATG 9 cut(s) 85, 136, 231, 463, 534, 611, 733, 763, 908
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 6 cut(s) 31, 48, 51, 168, 426, 646
FokI GGATG 3 cut(s) 86, 537, 689
FriOI GRGCYC 2 cut(s) 733, 848
Fsp4HI GCNGC 6 cut(s) 31, 48, 51, 168, 426, 646
FspBI CTAG 1 cut(s) 254
GluI GCNGC 6 cut(s) 31, 48, 51, 168, 426, 646
GsuI CTGGAG 1 cut(s) 487
HaeIII GGCC 4 cut(s) 236, 300, 645, 846
HapII CCGG 1 cut(s) 698
Hin1II CATG 9 cut(s) 89, 140, 235, 467, 538, 615, 737, 767, 912
HinfI GANTC 4 cut(s) 323, 599, 624, 776
HpaII CCGG 1 cut(s) 698
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 2 cut(s) 214, 784
Hpy188I TCNGA 2 cut(s) 296, 585
Hpy188III TCNNGA 8 cut(s) 22, 161, 394, 504, 596, 671, 720, 734
Hpy8I GTNNAC 2 cut(s) 214, 784
Hpy99I CGWCG 2 cut(s) 58, 61
HpyAV CCTTC 7 cut(s) 55, 64, 114, 181, 301, 439, 720
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4V TGCA 6 cut(s) 170, 200, 455, 538, 615, 685
HpyF10VI GCNNNNNNNGC 5 cut(s) 36, 137, 142, 197, 278
HpyF3I CTNAG 8 cut(s) 141, 404, 447, 582, 619, 660, 714, 774
Hsp92II CATG 9 cut(s) 89, 140, 235, 467, 538, 615, 737, 767, 912
Kzo9I GATC 7 cut(s) 157, 369, 588, 592, 766, 854, 898
LmnI GCTCC 2 cut(s) 376, 422
Lsp1109I GCAGC 5 cut(s) 34, 37, 42, 154, 437
LweI GCATC 1 cut(s) 646
MaeI CTAG 1 cut(s) 254
MalI GATC 7 cut(s) 159, 371, 590, 594, 768, 856, 900
MboI GATC 7 cut(s) 157, 369, 588, 592, 766, 854, 898
MboII GAAGA 8 cut(s) 79, 278, 379, 665, 686, 735, 865, 890
MflI RGATCY 2 cut(s) 157, 854
MhlI GDGCHC 3 cut(s) 223, 733, 848
MluCI AATT 4 cut(s) 517, 737, 749, 890
MlyI GAGTC 4 cut(s) 317, 593, 618, 785
MseI TTAA 2 cut(s) 489, 913
MspI CCGG 1 cut(s) 698
MspR9I CCNGG 2 cut(s) 479, 699
MvaI CCWGG 1 cut(s) 479
MwoI GCNNNNNNNGC 5 cut(s) 36, 137, 142, 197, 278
NciI CCSGG 1 cut(s) 699
NdeII GATC 7 cut(s) 157, 369, 588, 592, 766, 854, 898
NlaIII CATG 9 cut(s) 89, 140, 235, 467, 538, 615, 737, 767, 912
NlaIV GGNNCC 5 cut(s) 102, 159, 703, 845, 846
NspI RCATGY 4 cut(s) 140, 538, 615, 912
NspV TTCGAA 1 cut(s) 876
PaeI GCATGC 2 cut(s) 140, 615
PagI TCATGA 1 cut(s) 733
PceI AGGCCT 1 cut(s) 300
PflFI GACNNNGTC 1 cut(s) 715
PkrI GCNGC 6 cut(s) 32, 49, 52, 169, 427, 647
PleI GAGTC 4 cut(s) 317, 593, 618, 784
PpsI GAGTC 4 cut(s) 317, 593, 618, 784
Psp6I CCWGG 1 cut(s) 477
PspGI CCWGG 1 cut(s) 477
PspN4I GGNNCC 5 cut(s) 102, 159, 703, 845, 846
PspOMI GGGCCC 1 cut(s) 844
PspPI GGNCC 4 cut(s) 643, 756, 844, 845
PstNI CAGNNNCTG 1 cut(s) 167
PsuI RGATCY 2 cut(s) 157, 854
PsyI GACNNNGTC 1 cut(s) 715
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
SaqAI TTAA 2 cut(s) 489, 913
SatI GCNGC 6 cut(s) 31, 48, 51, 168, 426, 646
Sau3AI GATC 7 cut(s) 157, 369, 588, 592, 766, 854, 898
Sau96I GGNCC 4 cut(s) 643, 756, 844, 845
SchI GAGTC 4 cut(s) 317, 593, 618, 785
ScrFI CCNGG 2 cut(s) 479, 699
SduI GDGCHC 3 cut(s) 223, 733, 848
SfaNI GCATC 1 cut(s) 646
SfuI TTCGAA 1 cut(s) 876
SinI GGWCC 1 cut(s) 756
SmlI CTYRAG 3 cut(s) 392, 671, 821
SmoI CTYRAG 3 cut(s) 392, 671, 821
SphI GCATGC 2 cut(s) 140, 615
Sse9I AATT 4 cut(s) 517, 737, 749, 890
SseBI AGGCCT 1 cut(s) 300
SsiI CCGC 2 cut(s) 646, 770
SspMI CTAG 1 cut(s) 254
StuI AGGCCT 1 cut(s) 300
StyD4I CCNGG 2 cut(s) 477, 697
StyI CCWWGG 1 cut(s) 418
TaaI ACNGT 1 cut(s) 218
TaqI TCGA 7 cut(s) 150, 345, 372, 574, 591, 719, 876
TasI AATT 4 cut(s) 517, 737, 749, 890
TatI WGTACW 1 cut(s) 351
TauI GCSGC 1 cut(s) 648
Tru1I TTAA 2 cut(s) 489, 913
Tru9I TTAA 2 cut(s) 489, 913
TscAI CASTG 1 cut(s) 223
TseI GCWGC 5 cut(s) 30, 47, 50, 167, 425
TspDTI ATGAA 5 cut(s) 260, 666, 750, 848, 852
TspGWI ACGGA 1 cut(s) 769
TspRI CASTG 1 cut(s) 223
Tth111I GACNNNGTC 1 cut(s) 715
VpaK11BI GGWCC 1 cut(s) 756
XapI RAATTY 1 cut(s) 517
XceI RCATGY 4 cut(s) 140, 538, 615, 912
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.