Rorug06G0171300

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011791
Physical Location & Seq
Reverse (-)
25325515 .. 25328072
2558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0171300.1

Sequence Viewer

Length: 741 bp
ATGTTCCTTTGGATGACGACTGCTGAAGACTCTATTGGTCCAGAAGTAGAAAAGTTGGCGGCTTCACTTCCTGATGGTGGTGTCCTTCTTCTTGAAAATGTGAGGTTTTACAAAGAGGAGGAGAAGAACGATCCTGAGCATGCAAAGAAGCTCGCCTCTGTAGCTGATCTTTTTGTCAATGATGCATTCGGAACTGCACATAGAACCCATGCTTCAACTGAGGGTGTAACAAAATTCTTAAGGCCATCTGTAGCTGGTTTTCTTTTGCAGAAGGAACTCGACTATCTTGTTGGGGCAGTATCAAACCCAAAAAAGCCATTTGCAGCCATTGTTGGTGGTCCGAAGGTCTCATCCAAGATTGGAGTGATCGAGTCACTGTTAGAGAAGGTTGATTACTTAATTCTCGGTGGAGGAATGATCTTCACATTTTACAAGGCACAGGGTATCTCAGTGGGTTCATCTCTGGTGGAAAAGGATAAGCTAGAACTCGCTACATCACTCATTGCAAAGGCCAAGGCAAAGGGAGTGTCTCTTTTGCTACCCACTGATGTCATAATTGCAGACAAATTTGCTCCTGATGCAAACAGCAAGATTGTTCCAGCTTCAAGCATCCCTGATGGGTGGATGGGATTGGATATTGGACCAGACTCTATTAAGACATTCAATGATGCACTTGTACCACTCAAACCATCATTTGGAACGGACCAATGGGAGTGTTTGAGTTTGACAAGTTTGCAGTAG

Protein Analysis

246

Amino Acids

26.34

Weight (kDa)

5.19

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGK PF00162 7 - 225 1.7e-85 Phosphoglycerate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011791)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48850
fragaria_vesca FvH4_2g19310 FvH4_2g19310
malus_domestica MD05G1178100.v1.1 MD10G1166300.v1.1
prunus_persica Prupe.8G204700_v2.0.a1
pyrus_communis pycom05g16440 pycom10g14340
rosa_chinensis RchiOBHm_Chr6g0285121
rosa_laevigata RLG00000012671
rosa_multiflora Rmu_sc0002535.1_g000032 Rmu_sc0003797.1_g000006
rosa_roxburghii Rroxscaffold_7G00183650 Rroxscaffold_7G00184020
rosa_rugosa Rorug06G0171300
rosa_samantha Rh6BG283100 Rh6CG285000 Rh6DG278100
rosa_wichuraiana Rw6G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 695
AciI CCGC 1 cut(s) 59
AclWI GGATC 1 cut(s) 125
AcsI RAATTY 2 cut(s) 233, 566
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 1 cut(s) 678
AfiI CCNNNNNNNGG 2 cut(s) 77, 695
AflII CTTAAG 1 cut(s) 238
AgsI TTSAA 4 cut(s) 95, 216, 606, 664
AjuI GAANNNNNNNTTGG 2 cut(s) 18, 50
AluBI AGCT 5 cut(s) 151, 164, 254, 481, 602
AluI AGCT 5 cut(s) 151, 164, 254, 481, 602
Alw26I GTCTC 2 cut(s) 352, 534
AlwI GGATC 1 cut(s) 125
AoxI GGCC 2 cut(s) 242, 510
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 2 cut(s) 233, 566
ArsI GACNNNNNNTTYG 2 cut(s) 512, 544
AspS9I GGNCC 4 cut(s) 38, 338, 641, 703
AvaII GGWCC 4 cut(s) 38, 338, 641, 703
BarI GAAGNNNNNNTAC 2 cut(s) 377, 409
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 335
BccI CCATC 5 cut(s) 68, 253, 611, 619, 697
BcoDI GTCTC 2 cut(s) 352, 534
BfaI CTAG 1 cut(s) 482
BfmI CTRYAG 2 cut(s) 159, 249
BfrI CTTAAG 1 cut(s) 238
BisI GCNGC 2 cut(s) 60, 324
BlsI GCNGC 2 cut(s) 61, 325
Bme18I GGWCC 4 cut(s) 38, 338, 641, 703
BmgT120I GGNCC 4 cut(s) 38, 338, 641, 703
BmsI GCATC 4 cut(s) 172, 568, 618, 658
BpiI GAAGAC 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 513
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 695
Bse3DI GCAATG 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 513
BseGI GGATG 4 cut(s) 18, 350, 609, 630
BseLI CCNNNNNNNGG 2 cut(s) 77, 695
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 3 cut(s) 126, 210, 462
BseRI GAGGAG 2 cut(s) 131, 134
BseXI GCAGC 1 cut(s) 335
BsgI GTGCAG 1 cut(s) 180
BshFI GGCC 2 cut(s) 244, 512
BslI CCNNNNNNNGG 2 cut(s) 77, 695
BsmAI GTCTC 2 cut(s) 352, 534
BsmI GAATGC 1 cut(s) 185
BsnI GGCC 2 cut(s) 244, 512
Bso31I GGTCTC 1 cut(s) 352
Bsp143I GATC 4 cut(s) 130, 166, 366, 417
BspACI CCGC 1 cut(s) 59
BspANI GGCC 2 cut(s) 244, 512
BspCNI CTCAG 3 cut(s) 127, 211, 461
BspPI GGATC 1 cut(s) 125
BspTI CTTAAG 1 cut(s) 238
BspTNI GGTCTC 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 501
BssECI CCNNGG 1 cut(s) 513
BssMI GATC 4 cut(s) 130, 166, 366, 417
BssT1I CCWWGG 1 cut(s) 513
Bst4CI ACNGT 1 cut(s) 378
BstAFI CTTAAG 1 cut(s) 238
BstC8I GCNNGC 2 cut(s) 141, 153
BstDEI CTNAG 3 cut(s) 135, 219, 448
BstF5I GGATG 4 cut(s) 18, 350, 609, 630
BstKTI GATC 4 cut(s) 133, 169, 369, 420
BstMAI GTCTC 2 cut(s) 352, 534
BstMBI GATC 4 cut(s) 130, 166, 366, 417
BstMWI GCNNNNNNNGC 2 cut(s) 161, 578
BstNSI RCATGY 1 cut(s) 143
BstSFI CTRYAG 2 cut(s) 159, 249
BstV1I GCAGC 1 cut(s) 335
BstV2I GAAGAC 1 cut(s) 33
BsuRI GGCC 2 cut(s) 244, 512
BtsCI GGATG 4 cut(s) 18, 350, 609, 630
BtsIMutI CAGTG 3 cut(s) 374, 456, 543
Cac8I GCNNGC 2 cut(s) 141, 153
Cfr13I GGNCC 4 cut(s) 38, 338, 641, 703
Csp6I GTAC 1 cut(s) 677
CviAII CATG 2 cut(s) 140, 209
CviQI GTAC 1 cut(s) 677
DdeI CTNAG 3 cut(s) 135, 219, 448
DpnI GATC 4 cut(s) 132, 168, 368, 419
DpnII GATC 4 cut(s) 130, 166, 366, 417
Eco130I CCWWGG 1 cut(s) 513
Eco31I GGTCTC 1 cut(s) 352
Eco47I GGWCC 4 cut(s) 38, 338, 641, 703
Eco57I CTGAAG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 513
EcoT22I ATGCAT 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 2 cut(s) 143, 212
FaiI YATR 4 cut(s) 141, 201, 210, 554
FatI CATG 2 cut(s) 139, 208
Fnu4HI GCNGC 2 cut(s) 60, 324
FokI GGATG 4 cut(s) 25, 337, 596, 637
Fsp4HI GCNGC 2 cut(s) 60, 324
FspBI CTAG 1 cut(s) 482
GluI GCNGC 2 cut(s) 60, 324
HaeIII GGCC 2 cut(s) 244, 512
Hin1II CATG 2 cut(s) 143, 212
HinfI GANTC 3 cut(s) 29, 371, 647
Hpy188I TCNGA 2 cut(s) 191, 342
Hpy188III TCNNGA 5 cut(s) 41, 71, 92, 134, 575
HpyAV CCTTC 4 cut(s) 95, 265, 337, 379
HpyCH4III ACNGT 1 cut(s) 378
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 578
HpyF3I CTNAG 3 cut(s) 135, 219, 448
Hsp92II CATG 2 cut(s) 143, 212
Kzo9I GATC 4 cut(s) 130, 166, 366, 417
LmnI GCTCC 1 cut(s) 577
Lsp1109I GCAGC 1 cut(s) 335
LweI GCATC 4 cut(s) 172, 568, 618, 658
MaeI CTAG 1 cut(s) 482
MaeIII GTNAC 2 cut(s) 226, 372
MalI GATC 4 cut(s) 132, 168, 368, 419
MboI GATC 4 cut(s) 130, 166, 366, 417
MboII GAAGA 4 cut(s) 38, 80, 136, 412
MluCI AATT 4 cut(s) 233, 399, 555, 566
MlyI GAGTC 3 cut(s) 23, 380, 641
MnlI CCTC 6 cut(s) 96, 109, 112, 166, 214, 404
Mph1103I ATGCAT 1 cut(s) 187
MseI TTAA 3 cut(s) 239, 398, 654
MspCI CTTAAG 1 cut(s) 238
Mva1269I GAATGC 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 161, 578
NdeII GATC 4 cut(s) 130, 166, 366, 417
NlaIII CATG 2 cut(s) 143, 212
NmuCI GTSAC 1 cut(s) 372
NsiI ATGCAT 1 cut(s) 187
NspI RCATGY 1 cut(s) 143
PaeI GCATGC 1 cut(s) 143
PctI GAATGC 1 cut(s) 185
PflMI CCANNNNNTGG 1 cut(s) 695
PkrI GCNGC 2 cut(s) 61, 325
PleI GAGTC 3 cut(s) 23, 379, 641
PpsI GAGTC 3 cut(s) 23, 379, 641
PspPI GGNCC 4 cut(s) 38, 338, 641, 703
RsaI GTAC 1 cut(s) 678
RsaNI GTAC 1 cut(s) 677
SaqAI TTAA 3 cut(s) 239, 398, 654
SatI GCNGC 2 cut(s) 60, 324
Sau3AI GATC 4 cut(s) 130, 166, 366, 417
Sau96I GGNCC 4 cut(s) 38, 338, 641, 703
SchI GAGTC 3 cut(s) 23, 380, 641
SetI ASST 8 cut(s) 107, 153, 166, 256, 348, 390, 483, 604
SfaNI GCATC 4 cut(s) 172, 568, 618, 658
SfcI CTRYAG 2 cut(s) 159, 249
SinI GGWCC 4 cut(s) 38, 338, 641, 703
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
SphI GCATGC 1 cut(s) 143
Sse9I AATT 4 cut(s) 233, 399, 555, 566
SsiI CCGC 1 cut(s) 59
SspMI CTAG 1 cut(s) 482
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 1 cut(s) 378
TaqI TCGA 2 cut(s) 279, 369
TasI AATT 4 cut(s) 233, 399, 555, 566
TauI GCSGC 1 cut(s) 62
Tru1I TTAA 3 cut(s) 239, 398, 654
Tru9I TTAA 3 cut(s) 239, 398, 654
TscAI CASTG 3 cut(s) 381, 456, 550
TseFI GTSAC 1 cut(s) 372
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 372
TspDTI ATGAA 1 cut(s) 447
TspGWI ACGGA 1 cut(s) 716
TspRI CASTG 3 cut(s) 381, 456, 550
Van91I CCANNNNNTGG 1 cut(s) 695
Vha464I CTTAAG 1 cut(s) 238
VpaK11BI GGWCC 4 cut(s) 38, 338, 641, 703
XapI RAATTY 2 cut(s) 233, 566
XceI RCATGY 1 cut(s) 143
XspI CTAG 1 cut(s) 482
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.