MD05G1178100.v1.1

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0011791
Physical Location & Seq
Reverse (-)
30476390 .. 30479300
2911 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1178100.v1.1.491

Sequence Viewer

Length: 891 bp
ATGGAGGGGAGTCGGAAGATGAACAGCTGCAGCACCAAAGGGAAGAAAGATGATCTTTATCATGTTATTCATAAGGTTCCTTCTGGTGATAGTCCTTATGTTAGAGCTAAACATGCTCAGCTAGTTGCAAAGGATCCTGAGGCAGCAATAGTGTTGTTTTGGAAGGCAATAAATGCAGGAGACAGGGTGGACAGTGCCCTAAAAGACATGGCTGTGGTGATGAAGCAATTGGATAGAACTGAGGAGGCCATTGAAGCTGTTAAGTCCTTTAGAGGCCTTTGTTCCAAACAAGCCCAAGACTCTCTTGACAATGTCCTCATTGACTTGTACAAGAAATGTGGCAAAATTGAAGAGCAAATTGACTTGCTCAAGAGGAAGCTTAGGTTGATATACCAAGGAGCCGCCTTCAACGGAAAGCCGACTAAAACCGCGCGCTCTCATGGAAAGAAGTTCCAAGTTTCAGTTACACAAGAGACTTTGAGATTACTGGGTAATTTGGGCTGGGCCTATATGCAAAGGGGTAACTACATGATGGCGGAGGTCGTGTATCAAAAGGCCCAAATGATCGACCCTGACTCAAACAAAGCATGTAACTTGGGTTTGTGCCTAATCAAACAGGGCCGATACGAAGATGCCCGTTTGGTACTTGAAGATGTGGTTCAAAGTAGACTTCCAGGATCTGAGGAGAGCAAGTCGAAGAAACGGGCCCACGAGTTGTTAATGGAATTGAGGTCGATGAGTAGTTTGCCAGAGTCATTGGATCTACTGAGCCTGGATGATGATTTTGTGAAGGGGCTTGAGCAATTGATGAATGAATGGGGTCCGTTTAGATCCAAGAGGCTTCCAATCTTTGAAGAAATCTCTCAATTTAGAGATCAAGTGGCATGTTAA

Protein Analysis

297

Amino Acids

33.52

Weight (kDa)

8.86

Isoelectric Point (pI)

51.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_1 PF00515 162 - 192 1.4e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011791)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48850
fragaria_vesca FvH4_2g19310 FvH4_2g19310
malus_domestica MD05G1178100.v1.1 MD10G1166300.v1.1
prunus_persica Prupe.8G204700_v2.0.a1
pyrus_communis pycom05g16440 pycom10g14340
rosa_chinensis RchiOBHm_Chr6g0285121
rosa_laevigata RLG00000012671
rosa_multiflora Rmu_sc0002535.1_g000032 Rmu_sc0003797.1_g000006
rosa_roxburghii Rroxscaffold_7G00183650 Rroxscaffold_7G00184020
rosa_rugosa Rorug06G0171300
rosa_samantha Rh6BG283100 Rh6CG285000 Rh6DG278100
rosa_wichuraiana Rw6G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 667
AccII CGCG 2 cut(s) 431, 433
AciI CCGC 3 cut(s) 402, 429, 536
AclWI GGATC 5 cut(s) 128, 141, 685, 768, 825
AfaI GTAC 2 cut(s) 329, 645
AgsI TTSAA 6 cut(s) 254, 350, 409, 650, 662, 854
AjnI CCWGG 2 cut(s) 673, 771
AluBI AGCT 5 cut(s) 27, 107, 121, 257, 379
AluI AGCT 5 cut(s) 27, 107, 121, 257, 379
Alw26I GTCTC 2 cut(s) 174, 467
AlwI GGATC 5 cut(s) 128, 141, 685, 768, 825
AlwNI CAGNNNCTG 1 cut(s) 680
AoxI GGCC 6 cut(s) 246, 274, 504, 555, 619, 705
ApaI GGGCCC 1 cut(s) 709
ApeKI GCWGC 3 cut(s) 27, 30, 143
AspLEI GCGC 2 cut(s) 433, 435
AspS9I GGNCC 6 cut(s) 504, 556, 619, 705, 706, 821
AsuHPI GGTGA 2 cut(s) 98, 229
AvaII GGWCC 1 cut(s) 821
AxyI CCTNAGG 1 cut(s) 138
BaeGI GKGCMC 2 cut(s) 199, 709
BamHI GGATCC 1 cut(s) 133
BanII GRGCYC 1 cut(s) 709
BauI CACGAG 1 cut(s) 710
BbvI GCAGC 3 cut(s) 14, 42, 155
BccI CCATC 1 cut(s) 526
BciT130I CCWGG 2 cut(s) 675, 773
BcoDI GTCTC 2 cut(s) 174, 467
BfaI CTAG 1 cut(s) 122
BfmI CTRYAG 1 cut(s) 28
BisI GCNGC 4 cut(s) 28, 31, 144, 402
BlpI GCTNAGC 1 cut(s) 117
BlsI GCNGC 4 cut(s) 29, 32, 145, 403
Bme1390I CCNGG 2 cut(s) 675, 773
Bme18I GGWCC 1 cut(s) 821
BmgT120I GGNCC 6 cut(s) 504, 556, 619, 705, 706, 821
BmiI GGNNCC 5 cut(s) 78, 135, 400, 707, 822
BmrFI CCNGG 2 cut(s) 675, 773
BmrI ACTGGG 1 cut(s) 497
BmsI GCATC 1 cut(s) 622
BmuI ACTGGG 1 cut(s) 497
Bpu10I CCTNAGC 1 cut(s) 380
Bpu1102I GCTNAGC 1 cut(s) 117
BpuEI CTTGAG 2 cut(s) 353, 818
BsaBI GATNNNNATC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 394
BsaXI ACNNNNNCTCC 6 cut(s) 171, 201, 530, 560, 677, 707
Bse1I ACTGG 1 cut(s) 492
Bse21I CCTNAGG 1 cut(s) 138
Bse8I GATNNNNATC 1 cut(s) 57
BseBI CCWGG 2 cut(s) 675, 773
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 1 cut(s) 781
BseJI GATNNNNATC 1 cut(s) 57
BseMII CTCAG 5 cut(s) 129, 131, 231, 672, 758
BseNI ACTGG 1 cut(s) 492
BsePI GCGCGC 1 cut(s) 431
BseRI GAGGAG 2 cut(s) 257, 698
BseSI GKGCMC 2 cut(s) 199, 709
BseXI GCAGC 3 cut(s) 14, 42, 155
BseYI CCCAGC 1 cut(s) 501
Bsh1236I CGCG 2 cut(s) 431, 433
BshFI GGCC 6 cut(s) 248, 276, 506, 557, 621, 707
BsmAI GTCTC 2 cut(s) 174, 467
BsnI GGCC 6 cut(s) 248, 276, 506, 557, 621, 707
Bsp120I GGGCCC 1 cut(s) 705
Bsp1286I GDGCHC 2 cut(s) 199, 709
Bsp1407I TGTACA 1 cut(s) 327
Bsp143I GATC 7 cut(s) 52, 133, 564, 677, 760, 830, 874
Bsp1720I GCTNAGC 1 cut(s) 117
BspACI CCGC 3 cut(s) 402, 429, 536
BspANI GGCC 6 cut(s) 248, 276, 506, 557, 621, 707
BspCNI CTCAG 5 cut(s) 130, 130, 232, 673, 759
BspFNI CGCG 2 cut(s) 431, 433
BspLI GGNNCC 5 cut(s) 78, 135, 400, 707, 822
BspMAI CTGCAG 1 cut(s) 32
BspPI GGATC 5 cut(s) 128, 141, 685, 768, 825
BspQI GCTCTTC 1 cut(s) 345
BsrGI TGTACA 1 cut(s) 327
BsrI ACTGG 1 cut(s) 492
BssECI CCNNGG 1 cut(s) 394
BssHII GCGCGC 1 cut(s) 431
BssMI GATC 7 cut(s) 52, 133, 564, 677, 760, 830, 874
BssSI CACGAG 1 cut(s) 710
BssT1I CCWWGG 1 cut(s) 394
Bst2BI CACGAG 1 cut(s) 710
Bst2UI CCWGG 2 cut(s) 675, 773
Bst4CI ACNGT 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 345
BstAPI GCANNNNNTGC 1 cut(s) 173
BstAUI TGTACA 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 433
BstDEI CTNAG 6 cut(s) 117, 138, 240, 380, 681, 767
BstF5I GGATG 1 cut(s) 781
BstFNI CGCG 2 cut(s) 431, 433
BstHHI GCGC 2 cut(s) 433, 435
BstKTI GATC 7 cut(s) 55, 136, 567, 680, 763, 833, 877
BstMAI GTCTC 2 cut(s) 174, 467
BstMBI GATC 7 cut(s) 52, 133, 564, 677, 760, 830, 874
BstMWI GCNNNNNNNGC 3 cut(s) 113, 173, 254
BstNI CCWGG 2 cut(s) 675, 773
BstNSI RCATGY 3 cut(s) 116, 591, 888
BstSCI CCNGG 2 cut(s) 673, 771
BstSFI CTRYAG 1 cut(s) 28
BstSLI GKGCMC 2 cut(s) 199, 709
BstUI CGCG 2 cut(s) 431, 433
BstV1I GCAGC 3 cut(s) 14, 42, 155
BstX2I RGATCY 4 cut(s) 133, 677, 760, 830
BstYI RGATCY 4 cut(s) 133, 677, 760, 830
Bsu36I CCTNAGG 1 cut(s) 138
BsuRI GGCC 6 cut(s) 248, 276, 506, 557, 621, 707
BtsCI GGATG 1 cut(s) 781
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 433
CaiI CAGNNNCTG 1 cut(s) 680
CfoI GCGC 2 cut(s) 433, 435
Cfr13I GGNCC 6 cut(s) 504, 556, 619, 705, 706, 821
Csp6I GTAC 2 cut(s) 328, 644
CspCI CAANNNNNGTGG 2 cut(s) 319, 354
CviAII CATG 7 cut(s) 62, 113, 208, 440, 529, 588, 885
CviQI GTAC 2 cut(s) 328, 644
DdeI CTNAG 6 cut(s) 117, 138, 240, 380, 681, 767
DpnI GATC 7 cut(s) 54, 135, 566, 679, 762, 832, 876
DpnII GATC 7 cut(s) 52, 133, 564, 677, 760, 830, 874
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
EciI GGCGGA 1 cut(s) 551
Eco130I CCWWGG 1 cut(s) 394
Eco147I AGGCCT 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 709
Eco47I GGWCC 1 cut(s) 821
Eco81I CCTNAGG 1 cut(s) 138
EcoRII CCWGG 2 cut(s) 673, 771
EcoT14I CCWWGG 1 cut(s) 394
EcoT38I GRGCYC 1 cut(s) 709
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 7 cut(s) 65, 116, 211, 443, 532, 591, 888
FalI AAGNNNNNCTT 4 cut(s) 39, 71, 288, 320
FatI CATG 7 cut(s) 61, 112, 207, 439, 528, 587, 884
FblI GTMKAC 1 cut(s) 667
Fnu4HI GCNGC 4 cut(s) 28, 31, 144, 402
FokI GGATG 1 cut(s) 788
FriOI GRGCYC 1 cut(s) 709
Fsp4HI GCNGC 4 cut(s) 28, 31, 144, 402
FspBI CTAG 1 cut(s) 122
GlaI GCGC 2 cut(s) 432, 434
GluI GCNGC 4 cut(s) 28, 31, 144, 402
GsaI CCCAGC 1 cut(s) 505
HaeIII GGCC 6 cut(s) 248, 276, 506, 557, 621, 707
HhaI GCGC 2 cut(s) 433, 435
Hin1II CATG 7 cut(s) 65, 116, 211, 443, 532, 591, 888
Hin6I GCGC 2 cut(s) 431, 433
HinP1I GCGC 2 cut(s) 431, 433
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 4 cut(s) 10, 299, 575, 752
HphI GGTGA 2 cut(s) 98, 229
Hpy166II GTNNAC 2 cut(s) 190, 668
Hpy188I TCNGA 2 cut(s) 15, 682
Hpy188III TCNNGA 3 cut(s) 137, 305, 370
Hpy8I GTNNAC 2 cut(s) 190, 668
HpyAV CCTTC 4 cut(s) 90, 157, 415, 784
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 4 cut(s) 30, 128, 176, 514
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 173, 254
HpyF3I CTNAG 6 cut(s) 117, 138, 240, 380, 681, 767
Hsp92II CATG 7 cut(s) 65, 116, 211, 443, 532, 591, 888
HspAI GCGC 2 cut(s) 431, 433
Kzo9I GATC 7 cut(s) 52, 133, 564, 677, 760, 830, 874
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 1 cut(s) 398
Lsp1109I GCAGC 3 cut(s) 14, 42, 155
LweI GCATC 1 cut(s) 622
MaeI CTAG 1 cut(s) 122
MaeIII GTNAC 3 cut(s) 463, 521, 590
MalI GATC 7 cut(s) 54, 135, 566, 679, 762, 832, 876
MboI GATC 7 cut(s) 52, 133, 564, 677, 760, 830, 874
MboII GAAGA 7 cut(s) 28, 55, 362, 641, 662, 709, 866
MfeI CAATTG 2 cut(s) 227, 803
MflI RGATCY 4 cut(s) 133, 677, 760, 830
MhlI GDGCHC 2 cut(s) 199, 709
MluCI AATT 7 cut(s) 227, 345, 357, 493, 725, 803, 866
MlyI GAGTC 4 cut(s) 19, 293, 569, 761
MseI TTAA 3 cut(s) 261, 719, 889
MslI CAYNNNNRTG 1 cut(s) 212
MspA1I CMGCKG 1 cut(s) 27
MspR9I CCNGG 2 cut(s) 675, 773
MunI CAATTG 2 cut(s) 227, 803
MvaI CCWGG 2 cut(s) 675, 773
MvnI CGCG 2 cut(s) 431, 433
MwoI GCNNNNNNNGC 3 cut(s) 113, 173, 254
NdeII GATC 7 cut(s) 52, 133, 564, 677, 760, 830, 874
NlaIII CATG 7 cut(s) 65, 116, 211, 443, 532, 591, 888
NlaIV GGNNCC 5 cut(s) 78, 135, 400, 707, 822
NspI RCATGY 3 cut(s) 116, 591, 888
PauI GCGCGC 1 cut(s) 431
PceI AGGCCT 1 cut(s) 276
PciSI GCTCTTC 1 cut(s) 345
PflFI GACNNNGTC 1 cut(s) 311
PfoI TCCNGGA 1 cut(s) 673
PkrI GCNGC 4 cut(s) 29, 32, 145, 403
PleI GAGTC 4 cut(s) 18, 293, 569, 760
PpsI GAGTC 4 cut(s) 18, 293, 569, 760
Psp6I CCWGG 2 cut(s) 673, 771
PspFI CCCAGC 1 cut(s) 501
PspGI CCWGG 2 cut(s) 673, 771
PspN4I GGNNCC 5 cut(s) 78, 135, 400, 707, 822
PspOMI GGGCCC 1 cut(s) 705
PspPI GGNCC 6 cut(s) 504, 556, 619, 705, 706, 821
PstI CTGCAG 1 cut(s) 32
PstNI CAGNNNCTG 1 cut(s) 680
PsuI RGATCY 4 cut(s) 133, 677, 760, 830
PsyI GACNNNGTC 1 cut(s) 311
PteI GCGCGC 1 cut(s) 431
PvuII CAGCTG 1 cut(s) 27
RsaI GTAC 2 cut(s) 329, 645
RsaNI GTAC 2 cut(s) 328, 644
RseI CAYNNNNRTG 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 345
SaqAI TTAA 3 cut(s) 261, 719, 889
SatI GCNGC 4 cut(s) 28, 31, 144, 402
Sau3AI GATC 7 cut(s) 52, 133, 564, 677, 760, 830, 874
Sau96I GGNCC 6 cut(s) 504, 556, 619, 705, 706, 821
SchI GAGTC 4 cut(s) 19, 293, 569, 761
ScrFI CCNGG 2 cut(s) 675, 773
SduI GDGCHC 2 cut(s) 199, 709
SetI ASST 9 cut(s) 29, 78, 109, 123, 259, 381, 386, 543, 734
SfaNI GCATC 1 cut(s) 622
SfcI CTRYAG 1 cut(s) 28
SinI GGWCC 1 cut(s) 821
SmiMI CAYNNNNRTG 1 cut(s) 212
SmlI CTYRAG 2 cut(s) 368, 797
SmoI CTYRAG 2 cut(s) 368, 797
Sse9I AATT 7 cut(s) 227, 345, 357, 493, 725, 803, 866
SseBI AGGCCT 1 cut(s) 276
SsiI CCGC 3 cut(s) 402, 429, 536
SspMI CTAG 1 cut(s) 122
StuI AGGCCT 1 cut(s) 276
StyD4I CCNGG 2 cut(s) 673, 771
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 1 cut(s) 194
TaqI TCGA 3 cut(s) 567, 695, 734
TasI AATT 7 cut(s) 227, 345, 357, 493, 725, 803, 866
TatI WGTACW 1 cut(s) 327
TauI GCSGC 1 cut(s) 404
Tru1I TTAA 3 cut(s) 261, 719, 889
Tru9I TTAA 3 cut(s) 261, 719, 889
TscAI CASTG 1 cut(s) 199
TseI GCWGC 3 cut(s) 27, 30, 143
TspDTI ATGAA 5 cut(s) 35, 59, 236, 824, 828
TspGWI ACGGA 2 cut(s) 426, 813
TspRI CASTG 1 cut(s) 199
Tth111I GACNNNGTC 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 821
XceI RCATGY 3 cut(s) 116, 591, 888
XmiI GTMKAC 1 cut(s) 667
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.