Rroxscaffold_7G00184020

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011791
Physical Location & Seq
Forward (+)
23190480 .. 23193528
3049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00184020.1

Sequence Viewer

Length: 912 bp
ATGGAGGGAATGACGAGTTTCAAGATTAGCAGCAACAGCACTACTGCTGCGACGACGAAGGGGAAGAAGGATGAGCTTTATCATGTTATTCACAAGGTGCCTTCTGGTGATACTCCTTATGTTAGAGCCAAGCATGCTCAGCTTGTTGAAAAGGATCCAGAAGCTGCAATAGTGTTGTTTTGGAAGGCAATAAATGCAGGAGATAGAGTAGACAGTGCCCTAAAGGACATGGCCGTTGTGATGAAGCAACTAGACAGAACTGAAGAAGCCATTGAAGCTATCAAGTCCTTTAGAGGCCTTTGCTCTAAACAAGCACAAGACTCGCTGGATAATGTTCTCATCGACTTGTACAAGAAGTGTGGGAAGATCGAGGAGCAGATTGACTTGCTCAAGAGGAAGCTGAGGTTGATATACCAAGGAGCAGCCTTCAATGGCAGACAGACTAAGACTGCACGCTCTCATGGAAAGAAGTTCCAGGTCTCCGTTAAGCAAGAAACCTCCAGATTATTGGGAAATTTGGGATGGGCATACATGCAGAAAGGAAACTATATGATGGCAGAGGTAGTGTATCGAAAAGCTCAGATGATCGATCCTGACTCCAATAAGGCATGCAACTTGGGACTCTCCCTAATCAAACAGGGCCGCTATGAAGATGCTCAGTTGGTTCTTGAGGATGTATTGCAAAGTCGACTTCCGGGTGCTGATGAGACTAAGTCGAGAAGAAGGGCTCATGAATTGCTAATGGAATTGAGGTCCATACATGATCCACCTGAGTCCGTGGACTTATTGGGGCTGGATGATGATTTTGTCAAGGGGCTTGACCAGTTGATGAATGACTGGGGTCCTTTGAGATCCAAGAGGCTTCCCATCTTCGAAGAAATCTCTCAATTTAGAGATCAAGTGGCATGTTAA

Protein Analysis

303

Amino Acids

34.26

Weight (kDa)

8.69

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_1 PF00515 168 - 199 1.6e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011791)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48850
fragaria_vesca FvH4_2g19310 FvH4_2g19310
malus_domestica MD05G1178100.v1.1 MD10G1166300.v1.1
prunus_persica Prupe.8G204700_v2.0.a1
pyrus_communis pycom05g16440 pycom10g14340
rosa_chinensis RchiOBHm_Chr6g0285121
rosa_laevigata RLG00000012671
rosa_multiflora Rmu_sc0002535.1_g000032 Rmu_sc0003797.1_g000006
rosa_roxburghii Rroxscaffold_7G00183650 Rroxscaffold_7G00184020
rosa_rugosa Rorug06G0171300
rosa_samantha Rh6BG283100 Rh6CG285000 Rh6DG278100
rosa_wichuraiana Rw6G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 97
AccI GTMKAC 2 cut(s) 210, 688
AciI CCGC 1 cut(s) 643
AclWI GGATC 5 cut(s) 149, 162, 584, 758, 846
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 1 cut(s) 514
AcuI CTGAAG 1 cut(s) 282
AdeI CACNNNGTG 1 cut(s) 97
AfaI GTAC 1 cut(s) 350
AgsI TTSAA 4 cut(s) 22, 149, 275, 430
AjnI CCWGG 1 cut(s) 474
AluBI AGCT 6 cut(s) 76, 142, 164, 278, 400, 578
AluI AGCT 6 cut(s) 76, 142, 164, 278, 400, 578
Alw26I GTCTC 2 cut(s) 484, 701
AlwI GGATC 5 cut(s) 149, 162, 584, 758, 846
AlwNI CAGNNNCTG 1 cut(s) 164
AoxI GGCC 3 cut(s) 231, 295, 640
ApeKI GCWGC 4 cut(s) 30, 47, 164, 422
ApoI RAATTY 1 cut(s) 514
AspS9I GGNCC 3 cut(s) 640, 753, 842
AsuC2I CCSGG 1 cut(s) 696
AsuHPI GGTGA 1 cut(s) 119
AsuII TTCGAA 1 cut(s) 873
AvaII GGWCC 2 cut(s) 753, 842
BaeGI GKGCMC 1 cut(s) 220
BamHI GGATCC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 730
BbvCI CCTCAGC 1 cut(s) 401
BbvI GCAGC 4 cut(s) 34, 42, 151, 434
BccI CCATC 3 cut(s) 516, 547, 875
BceAI ACGGC 1 cut(s) 218
BcgI CGANNNNNNTGC 2 cut(s) 303, 337
BciT130I CCWGG 1 cut(s) 476
BcnI CCSGG 1 cut(s) 696
BcoDI GTCTC 2 cut(s) 484, 701
BfaI CTAG 1 cut(s) 251
BisI GCNGC 5 cut(s) 31, 48, 165, 423, 643
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 5 cut(s) 32, 49, 166, 424, 644
Bme1390I CCNGG 2 cut(s) 476, 696
Bme18I GGWCC 2 cut(s) 753, 842
BmgT120I GGNCC 3 cut(s) 640, 753, 842
BmiI GGNNCC 3 cut(s) 99, 156, 843
BmrFI CCNGG 2 cut(s) 476, 696
BmrI ACTGGG 1 cut(s) 847
BmsI GCATC 1 cut(s) 643
BmuI ACTGGG 1 cut(s) 847
BoxI GACNNNNGTC 1 cut(s) 840
BpmI CTGGAG 1 cut(s) 484
Bpu10I CCTNAGC 1 cut(s) 401
Bpu1102I GCTNAGC 1 cut(s) 138
Bpu14I TTCGAA 1 cut(s) 873
BpuEI CTTGAG 2 cut(s) 374, 689
BpuMI CCSGG 1 cut(s) 696
Bsa29I ATCGAT 1 cut(s) 588
BsaI GGTCTC 1 cut(s) 484
BsaJI CCNNGG 2 cut(s) 415, 777
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bse1I ACTGG 2 cut(s) 823, 842
BseBI CCWGG 1 cut(s) 476
BseCI ATCGAT 1 cut(s) 588
BseDI CCNNGG 2 cut(s) 415, 777
BseGI GGATG 4 cut(s) 76, 527, 679, 802
BseMII CTCAG 5 cut(s) 152, 392, 593, 671, 762
BseNI ACTGG 2 cut(s) 823, 842
BseRI GAGGAG 1 cut(s) 386
BseSI GKGCMC 1 cut(s) 220
BseXI GCAGC 4 cut(s) 34, 42, 151, 434
BsgI GTGCAG 1 cut(s) 435
BshFI GGCC 3 cut(s) 233, 297, 642
BshNI GGYRCC 1 cut(s) 97
BshVI ATCGAT 1 cut(s) 588
BsiSI CCGG 1 cut(s) 695
BslFI GGGAC 1 cut(s) 633
BsmAI GTCTC 2 cut(s) 484, 701
BsmFI GGGAC 1 cut(s) 633
BsnI GGCC 3 cut(s) 233, 297, 642
Bso31I GGTCTC 1 cut(s) 484
Bsp119I TTCGAA 1 cut(s) 873
Bsp1286I GDGCHC 2 cut(s) 220, 730
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 7 cut(s) 154, 366, 585, 589, 763, 851, 895
Bsp1720I GCTNAGC 1 cut(s) 138
BspACI CCGC 1 cut(s) 643
BspANI GGCC 3 cut(s) 233, 297, 642
BspCNI CTCAG 5 cut(s) 151, 393, 592, 670, 763
BspDI ATCGAT 1 cut(s) 588
BspHI TCATGA 1 cut(s) 730
BspLI GGNNCC 3 cut(s) 99, 156, 843
BspPI GGATC 5 cut(s) 149, 162, 584, 758, 846
BspT104I TTCGAA 1 cut(s) 873
BspT107I GGYRCC 1 cut(s) 97
BspTNI GGTCTC 1 cut(s) 484
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 2 cut(s) 823, 842
BssECI CCNNGG 2 cut(s) 415, 777
BssMI GATC 7 cut(s) 154, 366, 585, 589, 763, 851, 895
BssT1I CCWWGG 1 cut(s) 415
Bst2UI CCWGG 1 cut(s) 476
Bst4CI ACNGT 1 cut(s) 215
BstAPI GCANNNNNTGC 1 cut(s) 194
BstAUI TGTACA 1 cut(s) 348
BstBI TTCGAA 1 cut(s) 873
BstC8I GCNNGC 3 cut(s) 135, 454, 610
BstDEI CTNAG 7 cut(s) 138, 401, 444, 579, 657, 711, 771
BstDSI CCRYGG 1 cut(s) 777
BstF5I GGATG 4 cut(s) 76, 527, 679, 802
BstKTI GATC 7 cut(s) 157, 369, 588, 592, 766, 854, 898
BstMAI GTCTC 2 cut(s) 484, 701
BstMBI GATC 7 cut(s) 154, 366, 585, 589, 763, 851, 895
BstMWI GCNNNNNNNGC 5 cut(s) 36, 134, 139, 194, 275
BstNI CCWGG 1 cut(s) 476
BstNSI RCATGY 4 cut(s) 137, 535, 612, 909
BstPAI GACNNNNGTC 1 cut(s) 840
BstSCI CCNGG 2 cut(s) 474, 694
BstSLI GKGCMC 1 cut(s) 220
BstV1I GCAGC 4 cut(s) 34, 42, 151, 434
BstX2I RGATCY 2 cut(s) 154, 851
BstXI CCANNNNNNTGG 1 cut(s) 508
BstYI RGATCY 2 cut(s) 154, 851
Bsu15I ATCGAT 1 cut(s) 588
BsuRI GGCC 3 cut(s) 233, 297, 642
BsuTUI ATCGAT 1 cut(s) 588
BtgI CCRYGG 1 cut(s) 777
BtsCI GGATG 4 cut(s) 76, 527, 679, 802
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 3 cut(s) 135, 454, 610
CaiI CAGNNNCTG 1 cut(s) 164
CciI TCATGA 1 cut(s) 730
Cfr13I GGNCC 3 cut(s) 640, 753, 842
ClaI ATCGAT 1 cut(s) 588
Csp6I GTAC 1 cut(s) 349
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviAII CATG 9 cut(s) 83, 134, 229, 461, 532, 609, 731, 761, 906
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 7 cut(s) 138, 401, 444, 579, 657, 711, 771
DpnI GATC 7 cut(s) 156, 368, 587, 591, 765, 853, 897
DpnII GATC 7 cut(s) 154, 366, 585, 589, 763, 851, 895
DraIII CACNNNGTG 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 231
Eco130I CCWWGG 1 cut(s) 415
Eco147I AGGCCT 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 730
Eco31I GGTCTC 1 cut(s) 484
Eco47I GGWCC 2 cut(s) 753, 842
Eco57I CTGAAG 1 cut(s) 282
EcoO109I RGGNCCY 1 cut(s) 842
EcoRII CCWGG 1 cut(s) 474
EcoT14I CCWWGG 1 cut(s) 415
EcoT38I GRGCYC 1 cut(s) 730
ErhI CCWWGG 1 cut(s) 415
FaeI CATG 9 cut(s) 86, 137, 232, 464, 535, 612, 734, 764, 909
FaqI GGGAC 1 cut(s) 633
FatI CATG 9 cut(s) 82, 133, 228, 460, 531, 608, 730, 760, 905
FblI GTMKAC 2 cut(s) 210, 688
Fnu4HI GCNGC 5 cut(s) 31, 48, 165, 423, 643
FokI GGATG 4 cut(s) 83, 534, 686, 809
FriOI GRGCYC 1 cut(s) 730
Fsp4HI GCNGC 5 cut(s) 31, 48, 165, 423, 643
FspBI CTAG 1 cut(s) 251
GluI GCNGC 5 cut(s) 31, 48, 165, 423, 643
GsuI CTGGAG 1 cut(s) 484
HaeIII GGCC 3 cut(s) 233, 297, 642
HapII CCGG 1 cut(s) 695
Hin1II CATG 9 cut(s) 86, 137, 232, 464, 535, 612, 734, 764, 909
HincII GTYRAC 1 cut(s) 689
HindII GTYRAC 1 cut(s) 689
HinfI GANTC 4 cut(s) 320, 596, 621, 773
HpaII CCGG 1 cut(s) 695
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 3 cut(s) 211, 689, 781
Hpy188I TCNGA 1 cut(s) 582
Hpy188III TCNNGA 8 cut(s) 22, 158, 391, 501, 593, 668, 717, 731
Hpy8I GTNNAC 3 cut(s) 211, 689, 781
Hpy99I CGWCG 2 cut(s) 55, 58
HpyAV CCTTC 6 cut(s) 52, 61, 111, 178, 436, 717
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4V TGCA 6 cut(s) 167, 197, 452, 535, 612, 682
HpyF10VI GCNNNNNNNGC 5 cut(s) 36, 134, 139, 194, 275
HpyF3I CTNAG 7 cut(s) 138, 401, 444, 579, 657, 711, 771
Hsp92II CATG 9 cut(s) 86, 137, 232, 464, 535, 612, 734, 764, 909
Kzo9I GATC 7 cut(s) 154, 366, 585, 589, 763, 851, 895
LmnI GCTCC 2 cut(s) 373, 419
Lsp1109I GCAGC 4 cut(s) 34, 42, 151, 434
LweI GCATC 1 cut(s) 643
MaeI CTAG 1 cut(s) 251
MalI GATC 7 cut(s) 156, 368, 587, 591, 765, 853, 897
MboI GATC 7 cut(s) 154, 366, 585, 589, 763, 851, 895
MboII GAAGA 7 cut(s) 76, 275, 376, 662, 732, 862, 887
MflI RGATCY 2 cut(s) 154, 851
MhlI GDGCHC 2 cut(s) 220, 730
MluCI AATT 4 cut(s) 514, 734, 746, 887
MlyI GAGTC 4 cut(s) 314, 590, 615, 782
MnlI CCTC 9 cut(s) 287, 364, 387, 396, 508, 553, 664, 744, 852
MseI TTAA 2 cut(s) 486, 910
MspI CCGG 1 cut(s) 695
MspR9I CCNGG 2 cut(s) 476, 696
MvaI CCWGG 1 cut(s) 476
MwoI GCNNNNNNNGC 5 cut(s) 36, 134, 139, 194, 275
NciI CCSGG 1 cut(s) 696
NdeII GATC 7 cut(s) 154, 366, 585, 589, 763, 851, 895
NlaIII CATG 9 cut(s) 86, 137, 232, 464, 535, 612, 734, 764, 909
NlaIV GGNNCC 3 cut(s) 99, 156, 843
NspI RCATGY 4 cut(s) 137, 535, 612, 909
NspV TTCGAA 1 cut(s) 873
PaeI GCATGC 2 cut(s) 137, 612
PagI TCATGA 1 cut(s) 730
PceI AGGCCT 1 cut(s) 297
PflFI GACNNNGTC 1 cut(s) 712
PkrI GCNGC 5 cut(s) 32, 49, 166, 424, 644
PleI GAGTC 4 cut(s) 314, 590, 615, 781
PpsI GAGTC 4 cut(s) 314, 590, 615, 781
PpuMI RGGWCCY 1 cut(s) 842
PshAI GACNNNNGTC 1 cut(s) 840
Psp5II RGGWCCY 1 cut(s) 842
Psp6I CCWGG 1 cut(s) 474
PspGI CCWGG 1 cut(s) 474
PspN4I GGNNCC 3 cut(s) 99, 156, 843
PspPI GGNCC 3 cut(s) 640, 753, 842
PspPPI RGGWCCY 1 cut(s) 842
PstNI CAGNNNCTG 1 cut(s) 164
PsuI RGATCY 2 cut(s) 154, 851
PsyI GACNNNGTC 1 cut(s) 712
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SalI GTCGAC 1 cut(s) 687
SaqAI TTAA 2 cut(s) 486, 910
SatI GCNGC 5 cut(s) 31, 48, 165, 423, 643
Sau3AI GATC 7 cut(s) 154, 366, 585, 589, 763, 851, 895
Sau96I GGNCC 3 cut(s) 640, 753, 842
SchI GAGTC 4 cut(s) 314, 590, 615, 782
ScrFI CCNGG 2 cut(s) 476, 696
SduI GDGCHC 2 cut(s) 220, 730
SfaNI GCATC 1 cut(s) 643
SfuI TTCGAA 1 cut(s) 873
SinI GGWCC 2 cut(s) 753, 842
SmlI CTYRAG 2 cut(s) 389, 668
SmoI CTYRAG 2 cut(s) 389, 668
SphI GCATGC 2 cut(s) 137, 612
Sse9I AATT 4 cut(s) 514, 734, 746, 887
SseBI AGGCCT 1 cut(s) 297
SsiI CCGC 1 cut(s) 643
SspMI CTAG 1 cut(s) 251
StuI AGGCCT 1 cut(s) 297
StyD4I CCNGG 2 cut(s) 474, 694
StyI CCWWGG 1 cut(s) 415
TaaI ACNGT 1 cut(s) 215
TaqI TCGA 7 cut(s) 342, 369, 571, 588, 688, 716, 873
TasI AATT 4 cut(s) 514, 734, 746, 887
TatI WGTACW 1 cut(s) 348
TauI GCSGC 1 cut(s) 645
Tru1I TTAA 2 cut(s) 486, 910
Tru9I TTAA 2 cut(s) 486, 910
TscAI CASTG 1 cut(s) 220
TseI GCWGC 4 cut(s) 30, 47, 164, 422
TspDTI ATGAA 4 cut(s) 257, 663, 747, 845
TspGWI ACGGA 2 cut(s) 472, 766
TspRI CASTG 1 cut(s) 220
Tth111I GACNNNGTC 1 cut(s) 712
VpaK11BI GGWCC 2 cut(s) 753, 842
XapI RAATTY 1 cut(s) 514
XceI RCATGY 4 cut(s) 137, 535, 612, 909
XmiI GTMKAC 2 cut(s) 210, 688
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.