Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011791

Physical Location & Seq

Genomic Coordinates Reverse (-)

50626730 .. 50629605

Gene Structure 2876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG283100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGCATACAAAATGTACTTGTTGCAGTCATGATTCGATGTTGATTCAAATTAAGTTAATAGTTGTAACTTGCATTTTATTTAGGGTATATATACATACTTTACTAAAAAAACCTATGATAAATCTTTACTTACATGCAAGTTACAACTTTTTATTTCAGCTTGTCGAAAAGGATCCAGAGGCTGCAATAGTGTTGTTTTGGAAGGCAATAAATGCAGGAGATAGAGTAGACAGTGCCCTAAAGGACATGGCCGTTGTGATGAAGCAACTAGACAGAACTGAAGAAGCCATTGAAGCTATCAAGTCCTTCAGAGGCCTTTGCTCTAAACAAGCACAAGACTCGCTGGATAATGTTCTCATCGACTTGTACAAGAAGTGTGGGAAGATCGAGGAGCAGATTGACTTGCTCAAGAGGAAGCTGAGGTTGATATACCAAGGAGCAGCCTTCAATGGCAGACAGACTAAGACTGCACGATCTCATGGAAAGAAGTTCCAGGTCTCTGTTAAGCAAGAAACCTCCAGATTATTGGGAAATTTGGGATGGGCATACATGCAGAAAGGAAACTATATGATGGCAGAGGTAGTGTATCGAAAAGCTCAGATGATCGATCCTGACTCCAATAAGGCATGCAACTTAGGACTGTCCCTAATCAAACAGGGCCGCTATGAAGATGCTCAGTTGGTTCTTGAGGATGTATTGCAAAGTCGACTTCCGGGTGCCGATGAGACTAAGTCGAGAAGAAGGGCTCATGAATTGCTAATGGAATTGAGGTCCATACATGATCCGCCTGAATCCGTGGACTTATTGGGGCTAGATGATGATTTTGTCAAGGGGCTTGAGCAGTTGATGAATGAATGGGGTCCTTTTAGATCCAAGAGGCTTCCCATCTTCGAAGAAATCTCTCAATTTAGAGATCAAGTGGCATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006109 GO:0006792 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010438 GO:0010439 GO:0010675 GO:0017053 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0042594 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043455 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051716 GO:0062012 GO:0065007 GO:0070013 GO:0071496 GO:0080090 GO:0090568 GO:1900376

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_8

Protein Analysis

309

Amino Acids

35.46

Weight (kDa)

8.66

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	174 - 205	1.7e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48850
fragaria_vesca	FvH4_2g19310 FvH4_2g19310
malus_domestica	MD05G1178100.v1.1 MD10G1166300.v1.1
prunus_persica	Prupe.8G204700_v2.0.a1
pyrus_communis	pycom05g16440 pycom10g14340
rosa_chinensis	RchiOBHm_Chr6g0285121
rosa_laevigata	RLG00000012671
rosa_multiflora	Rmu_sc0002535.1_g000032 Rmu_sc0003797.1_g000006
rosa_roxburghii	Rroxscaffold_7G00183650 Rroxscaffold_7G00184020
rosa_rugosa	Rorug06G0171300
rosa_samantha	Rh6BG283100 Rh6CG285000 Rh6DG278100
rosa_wichuraiana	Rw6G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	716
AccI	GTMKAC	2 cut(s)	228, 706
AciI	CCGC	2 cut(s)	661, 785
AclWI	GGATC	5 cut(s)	167, 180, 602, 776, 864
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	532
AcuI	CTGAAG	2 cut(s)	292, 300
AfaI	GTAC	2 cut(s)	16, 368
AgsI	TTSAA	3 cut(s)	47, 293, 448
AjnI	CCWGG	1 cut(s)	492
AluBI	AGCT	4 cut(s)	160, 296, 418, 596
AluI	AGCT	4 cut(s)	160, 296, 418, 596
Alw26I	GTCTC	2 cut(s)	502, 719
AlwI	GGATC	5 cut(s)	167, 180, 602, 776, 864
AlwNI	CAGNNNCTG	1 cut(s)	182
AoxI	GGCC	3 cut(s)	249, 313, 658
ApeKI	GCWGC	2 cut(s)	182, 440
ApoI	RAATTY	1 cut(s)	532
AspS9I	GGNCC	3 cut(s)	658, 771, 860
AsuC2I	CCSGG	1 cut(s)	714
AsuII	TTCGAA	1 cut(s)	891
AvaII	GGWCC	2 cut(s)	771, 860
BaeGI	GKGCMC	1 cut(s)	238
BamHI	GGATCC	1 cut(s)	172
BanI	GGYRCC	1 cut(s)	716
BanII	GRGCYC	1 cut(s)	748
BbvCI	CCTCAGC	1 cut(s)	419
BbvI	GCAGC	2 cut(s)	169, 452
BccI	CCATC	3 cut(s)	534, 565, 893
BceAI	ACGGC	1 cut(s)	236
BcgI	CGANNNNNNTGC	2 cut(s)	321, 355
BciT130I	CCWGG	1 cut(s)	494
BcnI	CCSGG	1 cut(s)	714
BcoDI	GTCTC	2 cut(s)	502, 719
BfaI	CTAG	2 cut(s)	269, 812
BisI	GCNGC	3 cut(s)	183, 441, 661
BlsI	GCNGC	3 cut(s)	184, 442, 662
Bme1390I	CCNGG	2 cut(s)	494, 714
Bme18I	GGWCC	2 cut(s)	771, 860
BmgT120I	GGNCC	3 cut(s)	658, 771, 860
BmiI	GGNNCC	3 cut(s)	174, 718, 861
BmrFI	CCNGG	2 cut(s)	494, 714
BmsI	GCATC	1 cut(s)	661
BpmI	CTGGAG	1 cut(s)	502
Bpu10I	CCTNAGC	1 cut(s)	419
Bpu14I	TTCGAA	1 cut(s)	891
BpuEI	CTTGAG	3 cut(s)	392, 707, 857
BpuMI	CCSGG	1 cut(s)	714
Bsa29I	ATCGAT	1 cut(s)	606
BsaI	GGTCTC	1 cut(s)	502
BsaJI	CCNNGG	2 cut(s)	433, 795
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
BseBI	CCWGG	1 cut(s)	494
BseCI	ATCGAT	1 cut(s)	606
BseDI	CCNNGG	2 cut(s)	433, 795
BseGI	GGATG	2 cut(s)	545, 697
BseMII	CTCAG	3 cut(s)	410, 611, 689
BseRI	GAGGAG	1 cut(s)	404
BseSI	GKGCMC	1 cut(s)	238
BseXI	GCAGC	2 cut(s)	169, 452
BsgI	GTGCAG	1 cut(s)	453
BshFI	GGCC	3 cut(s)	251, 315, 660
BshNI	GGYRCC	1 cut(s)	716
BshVI	ATCGAT	1 cut(s)	606
BsiSI	CCGG	1 cut(s)	713
BslFI	GGGAC	1 cut(s)	628
BsmAI	GTCTC	2 cut(s)	502, 719
BsmFI	GGGAC	1 cut(s)	628
BsnI	GGCC	3 cut(s)	251, 315, 660
Bso31I	GGTCTC	1 cut(s)	502
Bsp119I	TTCGAA	1 cut(s)	891
Bsp1286I	GDGCHC	2 cut(s)	238, 748
Bsp1407I	TGTACA	1 cut(s)	366
Bsp143I	GATC	8 cut(s)	172, 384, 473, 603, 607, 781, 869, 913
BspACI	CCGC	2 cut(s)	661, 785
BspANI	GGCC	3 cut(s)	251, 315, 660
BspCNI	CTCAG	3 cut(s)	411, 610, 688
BspDI	ATCGAT	1 cut(s)	606
BspHI	TCATGA	2 cut(s)	28, 748
BspLI	GGNNCC	3 cut(s)	174, 718, 861
BspPI	GGATC	5 cut(s)	167, 180, 602, 776, 864
BspT104I	TTCGAA	1 cut(s)	891
BspT107I	GGYRCC	1 cut(s)	716
BspTNI	GGTCTC	1 cut(s)	502
BsrGI	TGTACA	1 cut(s)	366
BssECI	CCNNGG	2 cut(s)	433, 795
BssMI	GATC	8 cut(s)	172, 384, 473, 603, 607, 781, 869, 913
BssT1I	CCWWGG	1 cut(s)	433
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	2 cut(s)	233, 642
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstAUI	TGTACA	1 cut(s)	366
BstBI	TTCGAA	1 cut(s)	891
BstC8I	GCNNGC	1 cut(s)	628
BstDEI	CTNAG	6 cut(s)	419, 462, 597, 634, 675, 729
BstDSI	CCRYGG	1 cut(s)	795
BstF5I	GGATG	2 cut(s)	545, 697
BstKTI	GATC	8 cut(s)	175, 387, 476, 606, 610, 784, 872, 916
BstMAI	GTCTC	2 cut(s)	502, 719
BstMBI	GATC	8 cut(s)	172, 384, 473, 603, 607, 781, 869, 913
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 293
BstNI	CCWGG	1 cut(s)	494
BstNSI	RCATGY	4 cut(s)	137, 553, 630, 927
BstSCI	CCNGG	2 cut(s)	492, 712
BstSLI	GKGCMC	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	169, 452
BstX2I	RGATCY	2 cut(s)	172, 869
BstXI	CCANNNNNNTGG	1 cut(s)	526
BstYI	RGATCY	2 cut(s)	172, 869
Bsu15I	ATCGAT	1 cut(s)	606
BsuRI	GGCC	3 cut(s)	251, 315, 660
BsuTUI	ATCGAT	1 cut(s)	606
BtgI	CCRYGG	1 cut(s)	795
BtsCI	GGATG	2 cut(s)	545, 697
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	628
CaiI	CAGNNNCTG	1 cut(s)	182
CciI	TCATGA	2 cut(s)	28, 748
Cfr13I	GGNCC	3 cut(s)	658, 771, 860
ClaI	ATCGAT	1 cut(s)	606
Csp6I	GTAC	2 cut(s)	15, 367
CspCI	CAANNNNNGTGG	2 cut(s)	358, 393
CviAII	CATG	9 cut(s)	29, 134, 247, 479, 550, 627, 749, 779, 924
CviQI	GTAC	2 cut(s)	15, 367
DdeI	CTNAG	6 cut(s)	419, 462, 597, 634, 675, 729
DpnI	GATC	8 cut(s)	174, 386, 475, 605, 609, 783, 871, 915
DpnII	GATC	8 cut(s)	172, 384, 473, 603, 607, 781, 869, 913
EaeI	YGGCCR	1 cut(s)	249
EciI	GGCGGA	1 cut(s)	774
Eco130I	CCWWGG	1 cut(s)	433
Eco147I	AGGCCT	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	748
Eco31I	GGTCTC	1 cut(s)	502
Eco47I	GGWCC	2 cut(s)	771, 860
Eco57I	CTGAAG	2 cut(s)	292, 300
EcoO109I	RGGNCCY	1 cut(s)	860
EcoRII	CCWGG	1 cut(s)	492
EcoT14I	CCWWGG	1 cut(s)	433
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	748
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	9 cut(s)	32, 137, 250, 482, 553, 630, 752, 782, 927
FaqI	GGGAC	1 cut(s)	628
FatI	CATG	9 cut(s)	28, 133, 246, 478, 549, 626, 748, 778, 923
FblI	GTMKAC	2 cut(s)	228, 706
Fnu4HI	GCNGC	3 cut(s)	183, 441, 661
FokI	GGATG	2 cut(s)	552, 704
FriOI	GRGCYC	1 cut(s)	748
Fsp4HI	GCNGC	3 cut(s)	183, 441, 661
FspBI	CTAG	2 cut(s)	269, 812
GluI	GCNGC	3 cut(s)	183, 441, 661
GsuI	CTGGAG	1 cut(s)	502
HaeIII	GGCC	3 cut(s)	251, 315, 660
HapII	CCGG	1 cut(s)	713
Hin1II	CATG	9 cut(s)	32, 137, 250, 482, 553, 630, 752, 782, 927
HincII	GTYRAC	1 cut(s)	707
HindII	GTYRAC	1 cut(s)	707
HinfI	GANTC	5 cut(s)	32, 43, 338, 614, 791
HpaII	CCGG	1 cut(s)	713
Hpy166II	GTNNAC	3 cut(s)	229, 707, 799
Hpy188I	TCNGA	2 cut(s)	311, 600
Hpy188III	TCNNGA	8 cut(s)	29, 176, 409, 519, 611, 686, 735, 749
Hpy8I	GTNNAC	3 cut(s)	229, 707, 799
HpyAV	CCTTC	4 cut(s)	196, 316, 454, 735
HpyCH4III	ACNGT	2 cut(s)	233, 642
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 293
HpyF3I	CTNAG	6 cut(s)	419, 462, 597, 634, 675, 729
Hsp92II	CATG	9 cut(s)	32, 137, 250, 482, 553, 630, 752, 782, 927
Kzo9I	GATC	8 cut(s)	172, 384, 473, 603, 607, 781, 869, 913
LmnI	GCTCC	2 cut(s)	391, 437
Lsp1109I	GCAGC	2 cut(s)	169, 452
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	2 cut(s)	269, 812
MaeIII	GTNAC	2 cut(s)	64, 140
MalI	GATC	8 cut(s)	174, 386, 475, 605, 609, 783, 871, 915
MboI	GATC	8 cut(s)	172, 384, 473, 603, 607, 781, 869, 913
MboII	GAAGA	6 cut(s)	293, 394, 680, 750, 880, 905
MflI	RGATCY	2 cut(s)	172, 869
MhlI	GDGCHC	2 cut(s)	238, 748
MluCI	AATT	5 cut(s)	48, 532, 752, 764, 905
MlyI	GAGTC	2 cut(s)	332, 608
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	4 cut(s)	51, 56, 504, 928
MspI	CCGG	1 cut(s)	713
MspR9I	CCNGG	2 cut(s)	494, 714
MvaI	CCWGG	1 cut(s)	494
MwoI	GCNNNNNNNGC	2 cut(s)	212, 293
NciI	CCSGG	1 cut(s)	714
NdeII	GATC	8 cut(s)	172, 384, 473, 603, 607, 781, 869, 913
NlaIII	CATG	9 cut(s)	32, 137, 250, 482, 553, 630, 752, 782, 927
NlaIV	GGNNCC	3 cut(s)	174, 718, 861
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	4 cut(s)	137, 553, 630, 927
NspV	TTCGAA	1 cut(s)	891
PaeI	GCATGC	1 cut(s)	630
PagI	TCATGA	2 cut(s)	28, 748
PceI	AGGCCT	1 cut(s)	315
PfeI	GAWTC	3 cut(s)	32, 43, 791
PflFI	GACNNNGTC	1 cut(s)	730
PkrI	GCNGC	3 cut(s)	184, 442, 662
PleI	GAGTC	2 cut(s)	332, 608
PpsI	GAGTC	2 cut(s)	332, 608
PpuMI	RGGWCCY	1 cut(s)	860
Psp5II	RGGWCCY	1 cut(s)	860
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	3 cut(s)	174, 718, 861
PspPI	GGNCC	3 cut(s)	658, 771, 860
PspPPI	RGGWCCY	1 cut(s)	860
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	2 cut(s)	172, 869
PsyI	GACNNNGTC	1 cut(s)	730
RsaI	GTAC	2 cut(s)	16, 368
RsaNI	GTAC	2 cut(s)	15, 367
SalI	GTCGAC	1 cut(s)	705
SaqAI	TTAA	4 cut(s)	51, 56, 504, 928
SatI	GCNGC	3 cut(s)	183, 441, 661
Sau3AI	GATC	8 cut(s)	172, 384, 473, 603, 607, 781, 869, 913
Sau96I	GGNCC	3 cut(s)	658, 771, 860
SchI	GAGTC	2 cut(s)	332, 608
ScrFI	CCNGG	2 cut(s)	494, 714
SduI	GDGCHC	2 cut(s)	238, 748
SfaNI	GCATC	1 cut(s)	661
SfuI	TTCGAA	1 cut(s)	891
SinI	GGWCC	2 cut(s)	771, 860
SmlI	CTYRAG	3 cut(s)	407, 686, 836
SmoI	CTYRAG	3 cut(s)	407, 686, 836
SphI	GCATGC	1 cut(s)	630
Sse9I	AATT	5 cut(s)	48, 532, 752, 764, 905
SseBI	AGGCCT	1 cut(s)	315
SsiI	CCGC	2 cut(s)	661, 785
SspMI	CTAG	2 cut(s)	269, 812
StuI	AGGCCT	1 cut(s)	315
StyD4I	CCNGG	2 cut(s)	492, 712
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	2 cut(s)	233, 642
TaqI	TCGA	9 cut(s)	35, 165, 360, 387, 589, 606, 706, 734, 891
TasI	AATT	5 cut(s)	48, 532, 752, 764, 905
TatI	WGTACW	2 cut(s)	14, 366
TauI	GCSGC	1 cut(s)	663
TfiI	GAWTC	3 cut(s)	32, 43, 791
Tru1I	TTAA	4 cut(s)	51, 56, 504, 928
Tru9I	TTAA	4 cut(s)	51, 56, 504, 928
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	2 cut(s)	182, 440
TspDTI	ATGAA	5 cut(s)	275, 681, 765, 863, 867
TspGWI	ACGGA	1 cut(s)	784
TspRI	CASTG	1 cut(s)	238
Tth111I	GACNNNGTC	1 cut(s)	730
VpaK11BI	GGWCC	2 cut(s)	771, 860
XapI	RAATTY	1 cut(s)	532
XceI	RCATGY	4 cut(s)	137, 553, 630, 927
XmiI	GTMKAC	2 cut(s)	228, 706
XspI	CTAG	2 cut(s)	269, 812
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.