Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011791

Physical Location & Seq

Genomic Coordinates Reverse (-)

25665499 .. 25668698

Gene Structure 3200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1166300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGAGGGAAGTTCGAAGATGAACAGCTGCAGCACAAAAGGGAAGAAAGATGATCTTTATCATGTTATTCACAAGGTTCCTGCTGGTGATAGTCCTTATGTTAGAGCCAAACATGCTCAGCTAGTTGAAAAGGACCCAGAGGCAGCAATAGTTTTGTTTTGGAAGGCAATAAATGCAAGAGACAGAGTGGACAGTGCCCTAAAAGACATGGCTGTGGTGATGAAGCAATTGGACAGAACTGGGGAGGCCATTGAAGCTATCAAGTCCTTTAGAGGCCTTTGCTCCAAACAAGCCCAAGATTCACTTGACAATGTCCTCATTGACTTGTACAAGAAATGTGGCAAAGTTGAGGAGCAAATTGACTTGCTCAAGAGGAAGCTTAGGTTGATATACCAAGGCGCTACCTTCAACGGAAGACCAACTAAAATCGCCCGCTCTCATGGAAAGAAGTTCCAGGTTTCGGTTACGCAAGAGACCTCGAGATTATTGGGCAATTTGGGCTGGGCCTATATGCAGAAAGGTAACTACATGATGGCGGAGGTCGTGTATCGAAAGGCCCAAATGATCGACCCTGACTCGAACAAAGCATGTAATTTGGGTCTGTGCCTAATCAAACAAGGCCGACACGAAGAGGCCCTTTTGGCTCTCGAAGACGTGGTACACAGTAGACTTCCAGGATCCGAGGAGAGCAAGTTGAGGAAACGAGTGGACGAGTTGCTAATGGAGTTGAGGTCTATGAATTGTTTGCCAGAGTCATTGGATGTATTGAGCCTAGATGATGATGATTTTGTGAAAGGGCTTGAGCAGTTGATGAATGAATGGGGCCCGTTTAGATCTAAAAGGCTTCCCATCTTTGAAGAGATCTCTCAATTTAGAGATCAAGTGGCATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006109 GO:0006792 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010438 GO:0010439 GO:0010675 GO:0017053 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0042594 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043455 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051716 GO:0062012 GO:0065007 GO:0070013 GO:0071496 GO:0080090 GO:0090568 GO:1900376

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

298

Amino Acids

33.69

Weight (kDa)

8.55

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	161 - 192	1.6e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48850
fragaria_vesca	FvH4_2g19310 FvH4_2g19310
malus_domestica	MD05G1178100.v1.1 MD10G1166300.v1.1
prunus_persica	Prupe.8G204700_v2.0.a1
pyrus_communis	pycom05g16440 pycom10g14340
rosa_chinensis	RchiOBHm_Chr6g0285121
rosa_laevigata	RLG00000012671
rosa_multiflora	Rmu_sc0002535.1_g000032 Rmu_sc0003797.1_g000006
rosa_roxburghii	Rroxscaffold_7G00183650 Rroxscaffold_7G00184020
rosa_rugosa	Rorug06G0171300
rosa_samantha	Rh6BG283100 Rh6CG285000 Rh6DG278100
rosa_wichuraiana	Rw6G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	435
AccI	GTMKAC	1 cut(s)	667
AciI	CCGC	2 cut(s)	433, 536
AclWI	GGATC	2 cut(s)	672, 685
AfaI	GTAC	2 cut(s)	329, 660
AfiI	CCNNNNNNNGG	1 cut(s)	460
AgsI	TTSAA	4 cut(s)	128, 254, 409, 857
AjiI	CACGTC	1 cut(s)	655
AjnI	CCWGG	2 cut(s)	453, 673
AluBI	AGCT	4 cut(s)	27, 121, 257, 379
AluI	AGCT	4 cut(s)	27, 121, 257, 379
Alw26I	GTCTC	2 cut(s)	174, 467
AlwI	GGATC	2 cut(s)	672, 685
Ama87I	CYCGRG	1 cut(s)	478
AoxI	GGCC	7 cut(s)	246, 274, 504, 555, 619, 633, 823
ApaI	GGGCCC	1 cut(s)	827
ApeKI	GCWGC	3 cut(s)	27, 30, 143
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	6 cut(s)	133, 504, 556, 634, 823, 824
AsuHPI	GGTGA	2 cut(s)	98, 229
AsuII	TTCGAA	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	478
AvaII	GGWCC	1 cut(s)	133
BaeGI	GKGCMC	2 cut(s)	199, 827
BamHI	GGATCC	1 cut(s)	677
BanII	GRGCYC	1 cut(s)	827
BarI	GAAGNNNNNNTAC	2 cut(s)	642, 674
BbsI	GAAGAC	2 cut(s)	421, 657
BbvI	GCAGC	3 cut(s)	14, 42, 155
BccI	CCATC	2 cut(s)	526, 857
BciT130I	CCWGG	2 cut(s)	455, 675
BcoDI	GTCTC	2 cut(s)	174, 467
BfaI	CTAG	2 cut(s)	122, 773
BfmI	CTRYAG	1 cut(s)	28
BfoI	RGCGCY	1 cut(s)	402
BglI	GCCNNNNNGGC	1 cut(s)	641
BglII	AGATCT	2 cut(s)	833, 861
BisI	GCNGC	3 cut(s)	28, 31, 144
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	3 cut(s)	29, 32, 145
Bme1390I	CCNGG	2 cut(s)	455, 675
Bme18I	GGWCC	1 cut(s)	133
BmeT110I	CYCGRG	1 cut(s)	478
BmgBI	CACGTC	1 cut(s)	655
BmgT120I	GGNCC	6 cut(s)	133, 504, 556, 634, 823, 824
BmiI	GGNNCC	5 cut(s)	78, 135, 679, 824, 825
BmrFI	CCNGG	2 cut(s)	455, 675
BmrI	ACTGGG	1 cut(s)	249
BmuI	ACTGGG	1 cut(s)	249
BpiI	GAAGAC	2 cut(s)	421, 657
Bpu10I	CCTNAGC	1 cut(s)	380
Bpu1102I	GCTNAGC	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	14
BpuEI	CTTGAG	2 cut(s)	353, 821
BsaBI	GATNNNNATC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	2 cut(s)	394, 681
BsaXI	ACNNNNNCTCC	6 cut(s)	530, 560, 677, 707, 716, 746
Bsc4I	CCNNNNNNNGG	1 cut(s)	460
Bse1I	ACTGG	1 cut(s)	244
Bse8I	GATNNNNATC	1 cut(s)	57
BseBI	CCWGG	2 cut(s)	455, 675
BseDI	CCNNGG	2 cut(s)	394, 681
BseGI	GGATG	1 cut(s)	766
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	460
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	2 cut(s)	365, 698
BseSI	GKGCMC	2 cut(s)	199, 827
BseXI	GCAGC	3 cut(s)	14, 42, 155
BseYI	CCCAGC	1 cut(s)	501
BshFI	GGCC	7 cut(s)	248, 276, 506, 557, 621, 635, 825
BsiHKCI	CYCGRG	1 cut(s)	478
BslI	CCNNNNNNNGG	1 cut(s)	460
BsmAI	GTCTC	2 cut(s)	174, 467
BsnI	GGCC	7 cut(s)	248, 276, 506, 557, 621, 635, 825
Bso31I	GGTCTC	1 cut(s)	467
BsoBI	CYCGRG	1 cut(s)	478
Bsp119I	TTCGAA	1 cut(s)	14
Bsp120I	GGGCCC	1 cut(s)	823
Bsp1286I	GDGCHC	2 cut(s)	199, 827
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	6 cut(s)	52, 564, 677, 833, 861, 877
Bsp1720I	GCTNAGC	1 cut(s)	117
BspACI	CCGC	2 cut(s)	433, 536
BspANI	GGCC	7 cut(s)	248, 276, 506, 557, 621, 635, 825
BspCNI	CTCAG	1 cut(s)	130
BspLI	GGNNCC	5 cut(s)	78, 135, 679, 824, 825
BspMAI	CTGCAG	1 cut(s)	32
BspPI	GGATC	2 cut(s)	672, 685
BspT104I	TTCGAA	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	467
BsrBI	CCGCTC	1 cut(s)	435
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	2 cut(s)	394, 681
BssMI	GATC	6 cut(s)	52, 564, 677, 833, 861, 877
BssT1I	CCWWGG	1 cut(s)	394
Bst2UI	CCWGG	2 cut(s)	455, 675
Bst4CI	ACNGT	2 cut(s)	194, 665
Bst6I	CTCTTC	2 cut(s)	624, 852
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstAUI	TGTACA	1 cut(s)	327
BstBI	TTCGAA	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	433, 889
BstDEI	CTNAG	2 cut(s)	117, 380
BstF5I	GGATG	1 cut(s)	766
BstH2I	RGCGCY	1 cut(s)	402
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	6 cut(s)	55, 567, 680, 836, 864, 880
BstMAI	GTCTC	2 cut(s)	174, 467
BstMBI	GATC	6 cut(s)	52, 564, 677, 833, 861, 877
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 173, 254, 498, 641
BstNI	CCWGG	2 cut(s)	455, 675
BstNSI	RCATGY	3 cut(s)	116, 591, 891
BstSCI	CCNGG	2 cut(s)	453, 673
BstSFI	CTRYAG	1 cut(s)	28
BstSLI	GKGCMC	2 cut(s)	199, 827
BstV1I	GCAGC	3 cut(s)	14, 42, 155
BstV2I	GAAGAC	2 cut(s)	421, 657
BstX2I	RGATCY	3 cut(s)	677, 833, 861
BstYI	RGATCY	3 cut(s)	677, 833, 861
BsuRI	GGCC	7 cut(s)	248, 276, 506, 557, 621, 635, 825
BtrI	CACGTC	1 cut(s)	655
BtsCI	GGATG	1 cut(s)	766
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	2 cut(s)	433, 889
CfoI	GCGC	1 cut(s)	401
Cfr13I	GGNCC	6 cut(s)	133, 504, 556, 634, 823, 824
Csp6I	GTAC	2 cut(s)	328, 659
CspCI	CAANNNNNGTGG	2 cut(s)	319, 354
CviAII	CATG	7 cut(s)	62, 113, 208, 440, 529, 588, 888
CviQI	GTAC	2 cut(s)	328, 659
DdeI	CTNAG	2 cut(s)	117, 380
DpnI	GATC	6 cut(s)	54, 566, 679, 835, 863, 879
DpnII	GATC	6 cut(s)	52, 564, 677, 833, 861, 877
Eam1104I	CTCTTC	2 cut(s)	624, 852
EarI	CTCTTC	2 cut(s)	624, 852
EciI	GGCGGA	1 cut(s)	551
Eco130I	CCWWGG	1 cut(s)	394
Eco147I	AGGCCT	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	827
Eco31I	GGTCTC	1 cut(s)	467
Eco47I	GGWCC	1 cut(s)	133
Eco88I	CYCGRG	1 cut(s)	478
EcoO109I	RGGNCCY	3 cut(s)	133, 634, 823
EcoRII	CCWGG	2 cut(s)	453, 673
EcoT14I	CCWWGG	1 cut(s)	394
EcoT38I	GRGCYC	1 cut(s)	827
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	7 cut(s)	65, 116, 211, 443, 532, 591, 891
FalI	AAGNNNNNCTT	6 cut(s)	39, 71, 288, 320, 621, 653
FatI	CATG	7 cut(s)	61, 112, 207, 439, 528, 587, 887
FauI	CCCGC	1 cut(s)	440
FblI	GTMKAC	1 cut(s)	667
Fnu4HI	GCNGC	3 cut(s)	28, 31, 144
FokI	GGATG	1 cut(s)	773
FriOI	GRGCYC	1 cut(s)	827
Fsp4HI	GCNGC	3 cut(s)	28, 31, 144
FspBI	CTAG	2 cut(s)	122, 773
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	3 cut(s)	28, 31, 144
GsaI	CCCAGC	1 cut(s)	505
HaeII	RGCGCY	1 cut(s)	402
HaeIII	GGCC	7 cut(s)	248, 276, 506, 557, 621, 635, 825
HhaI	GCGC	1 cut(s)	401
Hin1II	CATG	7 cut(s)	65, 116, 211, 443, 532, 591, 891
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	3 cut(s)	299, 575, 752
HphI	GGTGA	2 cut(s)	98, 229
Hpy166II	GTNNAC	4 cut(s)	190, 661, 668, 709
Hpy188I	TCNGA	1 cut(s)	682
Hpy188III	TCNNGA	3 cut(s)	370, 480, 647
Hpy8I	GTNNAC	4 cut(s)	190, 661, 668, 709
HpyAV	CCTTC	2 cut(s)	157, 415
HpyCH4III	ACNGT	2 cut(s)	194, 665
HpyCH4IV	ACGT	1 cut(s)	654
HpyCH4V	TGCA	3 cut(s)	30, 176, 514
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 173, 254, 498, 641
HpyF3I	CTNAG	2 cut(s)	117, 380
HpySE526I	ACGT	1 cut(s)	654
Hsp92II	CATG	7 cut(s)	65, 116, 211, 443, 532, 591, 891
HspAI	GCGC	1 cut(s)	399
Kzo9I	GATC	6 cut(s)	52, 564, 677, 833, 861, 877
LmnI	GCTCC	2 cut(s)	287, 352
Lsp1109I	GCAGC	3 cut(s)	14, 42, 155
MaeI	CTAG	2 cut(s)	122, 773
MaeII	ACGT	1 cut(s)	654
MaeIII	GTNAC	2 cut(s)	463, 521
MalI	GATC	6 cut(s)	54, 566, 679, 835, 863, 879
MbiI	CCGCTC	1 cut(s)	435
MboI	GATC	6 cut(s)	52, 564, 677, 833, 861, 877
MboII	GAAGA	6 cut(s)	28, 55, 426, 641, 662, 869
MfeI	CAATTG	1 cut(s)	227
MflI	RGATCY	3 cut(s)	677, 833, 861
MhlI	GDGCHC	2 cut(s)	199, 827
MluCI	AATT	6 cut(s)	227, 357, 493, 592, 739, 869
MlyI	GAGTC	2 cut(s)	569, 761
MslI	CAYNNNNRTG	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	27
MspR9I	CCNGG	2 cut(s)	455, 675
MunI	CAATTG	1 cut(s)	227
MvaI	CCWGG	2 cut(s)	455, 675
MwoI	GCNNNNNNNGC	5 cut(s)	113, 173, 254, 498, 641
NdeII	GATC	6 cut(s)	52, 564, 677, 833, 861, 877
NlaIII	CATG	7 cut(s)	65, 116, 211, 443, 532, 591, 891
NlaIV	GGNNCC	5 cut(s)	78, 135, 679, 824, 825
NspI	RCATGY	3 cut(s)	116, 591, 891
NspV	TTCGAA	1 cut(s)	14
PaeI	GCATGC	1 cut(s)	891
PaeR7I	CTCGAG	1 cut(s)	478
PceI	AGGCCT	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	299
PflFI	GACNNNGTC	1 cut(s)	311
PfoI	TCCNGGA	1 cut(s)	673
PkrI	GCNGC	3 cut(s)	29, 32, 145
PleI	GAGTC	2 cut(s)	569, 760
PpsI	GAGTC	2 cut(s)	569, 760
PpuMI	RGGWCCY	1 cut(s)	133
Psp5II	RGGWCCY	1 cut(s)	133
Psp6I	CCWGG	2 cut(s)	453, 673
PspFI	CCCAGC	1 cut(s)	501
PspGI	CCWGG	2 cut(s)	453, 673
PspN4I	GGNNCC	5 cut(s)	78, 135, 679, 824, 825
PspOMI	GGGCCC	1 cut(s)	823
PspPI	GGNCC	6 cut(s)	133, 504, 556, 634, 823, 824
PspPPI	RGGWCCY	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	32
PsuI	RGATCY	3 cut(s)	677, 833, 861
PsyI	GACNNNGTC	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	27
RsaI	GTAC	2 cut(s)	329, 660
RsaNI	GTAC	2 cut(s)	328, 659
RseI	CAYNNNNRTG	1 cut(s)	212
SatI	GCNGC	3 cut(s)	28, 31, 144
Sau3AI	GATC	6 cut(s)	52, 564, 677, 833, 861, 877
Sau96I	GGNCC	6 cut(s)	133, 504, 556, 634, 823, 824
SchI	GAGTC	2 cut(s)	569, 761
ScrFI	CCNGG	2 cut(s)	455, 675
SduI	GDGCHC	2 cut(s)	199, 827
SfcI	CTRYAG	1 cut(s)	28
Sfr274I	CTCGAG	1 cut(s)	478
SfuI	TTCGAA	1 cut(s)	14
SinI	GGWCC	1 cut(s)	133
SlaI	CTCGAG	1 cut(s)	478
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	3 cut(s)	368, 478, 800
SmoI	CTYRAG	3 cut(s)	368, 478, 800
SphI	GCATGC	1 cut(s)	891
Sse9I	AATT	6 cut(s)	227, 357, 493, 592, 739, 869
SseBI	AGGCCT	1 cut(s)	276
SsiI	CCGC	2 cut(s)	433, 536
SspMI	CTAG	2 cut(s)	122, 773
StuI	AGGCCT	1 cut(s)	276
StyD4I	CCNGG	2 cut(s)	453, 673
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	2 cut(s)	194, 665
TaiI	ACGT	1 cut(s)	657
TaqI	TCGA	6 cut(s)	14, 479, 550, 567, 578, 648
TasI	AATT	6 cut(s)	227, 357, 493, 592, 739, 869
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	299
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	3 cut(s)	27, 30, 143
TspDTI	ATGAA	5 cut(s)	35, 236, 752, 827, 831
TspGWI	ACGGA	1 cut(s)	426
TspRI	CASTG	1 cut(s)	199
Tth111I	GACNNNGTC	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	133
XceI	RCATGY	3 cut(s)	116, 591, 891
XhoI	CTCGAG	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	667
XspI	CTAG	2 cut(s)	122, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.