PB1 domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G24715 AT3G24715 AT3G24715 |
| fragaria_vesca | FvH4_2g19501 |
| malus_domestica | MD05G1179200.v1.1 MD10G1168800.v1.1 |
| prunus_persica | Prupe.8G206500_v2.0.a1 |
| pyrus_communis | pycom05g16570 pycom10g14550 |
| rosa_chinensis | RchiOBHm_Chr6g0285191 |
| rosa_laevigata | RLG00000012662 |
| rosa_multiflora | Rmu_co8416369.1_g000001 Rmu_sc0005710.1_g000005 Rmu_sc0006801.1_g000005 |
| rosa_roxburghii | Rroxscaffold_7G00183430 |
| rosa_rugosa | Rorug06G0173200 |
| rosa_samantha | Rh6AG283200 Rh6BG284500 Rh6CG285900 Rh6DG278900 |
| rosa_wichuraiana | Rw0G000360 Rw6G024400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1508, 3056 |
| AarI | CACCTGC | 1 cut(s) | 1849 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 358, 1346 |
| Acc36I | ACCTGC | 2 cut(s) | 206, 1849 |
| AccB1I | GGYRCC | 2 cut(s) | 3256, 3377 |
| AccBSI | CCGCTC | 1 cut(s) | 185 |
| AccI | GTMKAC | 1 cut(s) | 1253 |
| AciI | CCGC | 4 cut(s) | 185, 1568, 1853, 2262 |
| AcoI | YGGCCR | 5 cut(s) | 39, 488, 1198, 1267, 3491 |
| AcuI | CTGAAG | 3 cut(s) | 155, 1197, 1242 |
| AfaI | GTAC | 6 cut(s) | 138, 207, 265, 1602, 2764, 2943 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 107, 215, 629, 1646, 1827 |
| AflIII | ACRYGT | 3 cut(s) | 333, 659, 2545 |
| AjiI | CACGTC | 1 cut(s) | 336 |
| AjnI | CCWGG | 1 cut(s) | 617 |
| AleI | CACNNNNGTG | 2 cut(s) | 2130, 3430 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 298, 330 |
| Alw21I | GWGCWC | 1 cut(s) | 59 |
| Alw26I | GTCTC | 8 cut(s) | 136, 525, 853, 1137, 1354, 2643, 3537, 3567 |
| AoxI | GGCC | 9 cut(s) | 39, 488, 620, 1198, 1213, 1267, 2101, 2460, 3491 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 313, 804 |
| AspS9I | GGNCC | 3 cut(s) | 1957, 2177, 2461 |
| AsuC2I | CCSGG | 1 cut(s) | 3287 |
| AsuHPI | GGTGA | 7 cut(s) | 199, 899, 1727, 1830, 2066, 2651, 3001 |
| AsuNHI | GCTAGC | 1 cut(s) | 2111 |
| AvaII | GGWCC | 2 cut(s) | 1957, 2177 |
| AxyI | CCTNAGG | 1 cut(s) | 1897 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1525, 1558, 3204, 3237 |
| BalI | TGGCCA | 3 cut(s) | 41, 1200, 1269 |
| BamHI | GGATCC | 2 cut(s) | 2996, 3154 |
| BanI | GGYRCC | 2 cut(s) | 3256, 3377 |
| BanII | GRGCYC | 1 cut(s) | 2247 |
| BbsI | GAAGAC | 4 cut(s) | 1660, 1982, 2496, 2517 |
| Bbv12I | GWGCWC | 1 cut(s) | 59 |
| BccI | CCATC | 8 cut(s) | 422, 623, 1283, 2129, 2674, 2942, 3247, 3389 |
| BceAI | ACGGC | 2 cut(s) | 3340, 3478 |
| BciT130I | CCWGG | 1 cut(s) | 619 |
| BciVI | GTATCC | 1 cut(s) | 2377 |
| BclI | TGATCA | 2 cut(s) | 2020, 2314 |
| BcnI | CCSGG | 1 cut(s) | 3287 |
| BcoDI | GTCTC | 8 cut(s) | 136, 525, 853, 1137, 1354, 2643, 3537, 3567 |
| BfaI | CTAG | 6 cut(s) | 624, 1986, 2112, 2406, 3014, 3140 |
| BfmI | CTRYAG | 3 cut(s) | 1914, 2484, 2973 |
| BfuAI | ACCTGC | 2 cut(s) | 206, 1849 |
| BfuI | GTATCC | 1 cut(s) | 2377 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1850 |
| BglII | AGATCT | 2 cut(s) | 802, 1363 |
| BlpI | GCTNAGC | 1 cut(s) | 401 |
| Bme1390I | CCNGG | 2 cut(s) | 619, 3287 |
| Bme18I | GGWCC | 2 cut(s) | 1957, 2177 |
| BmgBI | CACGTC | 1 cut(s) | 336 |
| BmgT120I | GGNCC | 3 cut(s) | 1957, 2177, 2461 |
| BmiI | GGNNCC | 8 cut(s) | 1387, 1911, 1959, 2998, 3156, 3258, 3354, 3379 |
| BmrFI | CCNGG | 2 cut(s) | 619, 3287 |
| BmrI | ACTGGG | 4 cut(s) | 1137, 1655, 1703, 2270 |
| BmtI | GCTAGC | 1 cut(s) | 2115 |
| BmuI | ACTGGG | 4 cut(s) | 1137, 1655, 1703, 2270 |
| BpiI | GAAGAC | 4 cut(s) | 1660, 1982, 2496, 2517 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3142, 3174 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 401 |
| BpuEI | CTTGAG | 3 cut(s) | 2318, 2987, 3169 |
| BpuMI | CCSGG | 1 cut(s) | 3287 |
| BsaAI | YACGTR | 1 cut(s) | 662 |
| BsaBI | GATNNNNATC | 2 cut(s) | 801, 3512 |
| BsaI | GGTCTC | 2 cut(s) | 853, 1137 |
| BsaJI | CCNNGG | 5 cut(s) | 159, 617, 863, 1595, 3248 |
| BsaWI | WCCGGW | 2 cut(s) | 3344, 3557 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 298, 328, 1117, 1147 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 107, 215, 629, 1646, 1827 |
| Bse118I | RCCGGY | 1 cut(s) | 3489 |
| Bse1I | ACTGG | 8 cut(s) | 42, 1132, 1310, 1650, 1698, 1920, 2276, 2499 |
| Bse21I | CCTNAGG | 1 cut(s) | 1897 |
| Bse3DI | GCAATG | 1 cut(s) | 2682 |
| Bse8I | GATNNNNATC | 2 cut(s) | 801, 3512 |
| BseBI | CCWGG | 1 cut(s) | 619 |
| BseDI | CCNNGG | 5 cut(s) | 159, 617, 863, 1595, 3248 |
| BseGI | GGATG | 8 cut(s) | 850, 2155, 2200, 2396, 2635, 2911, 3073, 3258 |
| BseJI | GATNNNNATC | 2 cut(s) | 801, 3512 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 107, 215, 629, 1646, 1827 |
| BseMI | GCAATG | 1 cut(s) | 2682 |
| BseNI | ACTGG | 8 cut(s) | 42, 1132, 1310, 1650, 1698, 1920, 2276, 2499 |
| BseRI | GAGGAG | 4 cut(s) | 319, 513, 836, 3365 |
| BseX3I | CGGCCG | 1 cut(s) | 3491 |
| BsgI | GTGCAG | 1 cut(s) | 95 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3494 |
| BshFI | GGCC | 9 cut(s) | 41, 490, 622, 1200, 1215, 1269, 2103, 2462, 3493 |
| BshNI | GGYRCC | 2 cut(s) | 3256, 3377 |
| BsiEI | CGRYCG | 1 cut(s) | 3494 |
| BsiHKAI | GWGCWC | 1 cut(s) | 59 |
| BsiSI | CCGG | 4 cut(s) | 3286, 3345, 3490, 3558 |
| BslFI | GGGAC | 3 cut(s) | 666, 1099, 2524 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 107, 215, 629, 1646, 1827 |
| BsmAI | GTCTC | 8 cut(s) | 136, 525, 853, 1137, 1354, 2643, 3537, 3567 |
| BsmFI | GGGAC | 3 cut(s) | 666, 1099, 2524 |
| BsmI | GAATGC | 2 cut(s) | 2517, 3094 |
| BsnI | GGCC | 9 cut(s) | 41, 490, 622, 1200, 1215, 1269, 2103, 2462, 3493 |
| Bso31I | GGTCTC | 2 cut(s) | 853, 1137 |
| Bsp1286I | GDGCHC | 2 cut(s) | 59, 2247 |
| Bsp1407I | TGTACA | 1 cut(s) | 136 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 401 |
| Bsp19I | CCATGG | 1 cut(s) | 3248 |
| BspACI | CCGC | 4 cut(s) | 185, 1568, 1853, 2262 |
| BspANI | GGCC | 9 cut(s) | 41, 490, 622, 1200, 1215, 1269, 2103, 2462, 3493 |
| BspHI | TCATGA | 2 cut(s) | 1723, 1810 |
| BspLI | GGNNCC | 8 cut(s) | 1387, 1911, 1959, 2998, 3156, 3258, 3354, 3379 |
| BspMAI | CTGCAG | 2 cut(s) | 1918, 2488 |
| BspMI | ACCTGC | 2 cut(s) | 206, 1849 |
| BspOI | GCTAGC | 1 cut(s) | 2115 |
| BspQI | GCTCTTC | 1 cut(s) | 690 |
| BspT107I | GGYRCC | 2 cut(s) | 3256, 3377 |
| BspTNI | GGTCTC | 2 cut(s) | 853, 1137 |
| BsrBI | CCGCTC | 1 cut(s) | 185 |
| BsrDI | GCAATG | 1 cut(s) | 2682 |
| BsrFI | RCCGGY | 1 cut(s) | 3489 |
| BsrGI | TGTACA | 1 cut(s) | 136 |
| BsrI | ACTGG | 8 cut(s) | 42, 1132, 1310, 1650, 1698, 1920, 2276, 2499 |
| BssAI | RCCGGY | 1 cut(s) | 3489 |
| BssECI | CCNNGG | 5 cut(s) | 159, 617, 863, 1595, 3248 |
| BssT1I | CCWWGG | 3 cut(s) | 159, 1595, 3248 |
| Bst2UI | CCWGG | 1 cut(s) | 619 |
| Bst4CI | ACNGT | 9 cut(s) | 268, 1246, 1741, 1951, 2284, 2776, 2974, 3429, 3541 |
| Bst6I | CTCTTC | 6 cut(s) | 187, 690, 1471, 1859, 3414, 3456 |
| BstAUI | TGTACA | 1 cut(s) | 136 |
| BstBAI | YACGTR | 1 cut(s) | 662 |
| BstC8I | GCNNGC | 6 cut(s) | 1409, 2113, 2698, 3009, 3491, 3525 |
| BstDSI | CCRYGG | 2 cut(s) | 863, 3248 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 213 |
| BstF5I | GGATG | 8 cut(s) | 850, 2155, 2200, 2396, 2635, 2911, 3073, 3258 |
| BstMAI | GTCTC | 8 cut(s) | 136, 525, 853, 1137, 1354, 2643, 3537, 3567 |
| BstMCI | CGRYCG | 1 cut(s) | 3494 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 411, 1850, 2430, 2975, 3049, 3068 |
| BstNI | CCWGG | 1 cut(s) | 619 |
| BstNSI | RCATGY | 6 cut(s) | 1345, 1411, 1418, 1860, 2549, 3011 |
| BstSCI | CCNGG | 2 cut(s) | 617, 3285 |
| BstSFI | CTRYAG | 3 cut(s) | 1914, 2484, 2973 |
| BstV2I | GAAGAC | 4 cut(s) | 1660, 1982, 2496, 2517 |
| BstX2I | RGATCY | 8 cut(s) | 280, 766, 802, 1363, 2756, 2892, 2996, 3154 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1936 |
| BstYI | RGATCY | 8 cut(s) | 280, 766, 802, 1363, 2756, 2892, 2996, 3154 |
| BstZI | CGGCCG | 1 cut(s) | 3491 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1897 |
| BsuI | GTATCC | 1 cut(s) | 2377 |
| BsuRI | GGCC | 9 cut(s) | 41, 490, 622, 1200, 1215, 1269, 2103, 2462, 3493 |
| BtgI | CCRYGG | 2 cut(s) | 863, 3248 |
| BtrI | CACGTC | 1 cut(s) | 336 |
| BtsCI | GGATG | 8 cut(s) | 850, 2155, 2200, 2396, 2635, 2911, 3073, 3258 |
| BveI | ACCTGC | 2 cut(s) | 206, 1849 |
| Cac8I | GCNNGC | 6 cut(s) | 1409, 2113, 2698, 3009, 3491, 3525 |
| CciI | TCATGA | 2 cut(s) | 1723, 1810 |
| Cfr10I | RCCGGY | 1 cut(s) | 3489 |
| Cfr13I | GGNCC | 3 cut(s) | 1957, 2177, 2461 |
| CseI | GACGC | 1 cut(s) | 2689 |
| Csp6I | GTAC | 6 cut(s) | 137, 206, 264, 1601, 2763, 2942 |
| CviQI | GTAC | 6 cut(s) | 137, 206, 264, 1601, 2763, 2942 |
| DraI | TTTAAA | 3 cut(s) | 540, 1081, 2355 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 358, 1346 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 358, 1346 |
| EaeI | YGGCCR | 5 cut(s) | 39, 488, 1198, 1267, 3491 |
| EagI | CGGCCG | 1 cut(s) | 3491 |
| Eam1104I | CTCTTC | 6 cut(s) | 187, 690, 1471, 1859, 3414, 3456 |
| EarI | CTCTTC | 6 cut(s) | 187, 690, 1471, 1859, 3414, 3456 |
| EclXI | CGGCCG | 1 cut(s) | 3491 |
| Eco130I | CCWWGG | 3 cut(s) | 159, 1595, 3248 |
| Eco147I | AGGCCT | 2 cut(s) | 622, 2103 |
| Eco24I | GRGCYC | 1 cut(s) | 2247 |
| Eco31I | GGTCTC | 2 cut(s) | 853, 1137 |
| Eco32I | GATATC | 1 cut(s) | 2572 |
| Eco47I | GGWCC | 2 cut(s) | 1957, 2177 |
| Eco52I | CGGCCG | 1 cut(s) | 3491 |
| Eco57I | CTGAAG | 3 cut(s) | 155, 1197, 1242 |
| Eco81I | CCTNAGG | 1 cut(s) | 1897 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 213 |
| EcoRI | GAATTC | 1 cut(s) | 2086 |
| EcoRII | CCWGG | 1 cut(s) | 617 |
| EcoRV | GATATC | 1 cut(s) | 2572 |
| EcoT14I | CCWWGG | 3 cut(s) | 159, 1595, 3248 |
| EcoT22I | ATGCAT | 1 cut(s) | 3372 |
| EcoT38I | GRGCYC | 1 cut(s) | 2247 |
| ErhI | CCWWGG | 3 cut(s) | 159, 1595, 3248 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 436, 468 |
| FaqI | GGGAC | 3 cut(s) | 666, 1099, 2524 |
| FauNDI | CATATG | 3 cut(s) | 738, 2319, 2767 |
| FbaI | TGATCA | 2 cut(s) | 2020, 2314 |
| FblI | GTMKAC | 1 cut(s) | 1253 |
| FokI | GGATG | 8 cut(s) | 857, 2162, 2187, 2403, 2642, 2898, 3080, 3265 |
| FriOI | GRGCYC | 1 cut(s) | 2247 |
| FspBI | CTAG | 6 cut(s) | 624, 1986, 2112, 2406, 3014, 3140 |
| HaeIII | GGCC | 9 cut(s) | 41, 490, 622, 1200, 1215, 1269, 2103, 2462, 3493 |
| HapII | CCGG | 4 cut(s) | 3286, 3345, 3490, 3558 |
| HgaI | GACGC | 1 cut(s) | 2689 |
| HincII | GTYRAC | 3 cut(s) | 1031, 2222, 3145 |
| HindII | GTYRAC | 3 cut(s) | 1031, 2222, 3145 |
| HindIII | AAGCTT | 1 cut(s) | 3050 |
| HpaII | CCGG | 4 cut(s) | 3286, 3345, 3490, 3558 |
| HphI | GGTGA | 7 cut(s) | 199, 899, 1727, 1830, 2066, 2651, 3001 |
| Hpy166II | GTNNAC | 8 cut(s) | 247, 508, 1031, 1254, 2057, 2222, 3145, 3544 |
| Hpy8I | GTNNAC | 8 cut(s) | 247, 508, 1031, 1254, 2057, 2222, 3145, 3544 |
| HpyAV | CCTTC | 6 cut(s) | 412, 442, 1205, 2788, 3016, 3292 |
| HpyCH4III | ACNGT | 9 cut(s) | 268, 1246, 1741, 1951, 2284, 2776, 2974, 3429, 3541 |
| HpyCH4IV | ACGT | 2 cut(s) | 335, 661 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 411, 1850, 2430, 2975, 3049, 3068 |
| HpySE526I | ACGT | 2 cut(s) | 335, 661 |
| KroI | GCCGGC | 1 cut(s) | 3489 |
| KroNI | GCCGGC | 1 cut(s) | 3491 |
| Ksp22I | TGATCA | 2 cut(s) | 2020, 2314 |
| LguI | GCTCTTC | 1 cut(s) | 690 |
| LmnI | GCTCC | 5 cut(s) | 182, 502, 2264, 2951, 3352 |
| MaeI | CTAG | 6 cut(s) | 624, 1986, 2112, 2406, 3014, 3140 |
| MaeII | ACGT | 2 cut(s) | 335, 661 |
| MbiI | CCGCTC | 1 cut(s) | 185 |
| MfeI | CAATTG | 2 cut(s) | 2465, 2864 |
| MflI | RGATCY | 8 cut(s) | 280, 766, 802, 1363, 2756, 2892, 2996, 3154 |
| MhlI | GDGCHC | 2 cut(s) | 59, 2247 |
| MlsI | TGGCCA | 3 cut(s) | 41, 1200, 1269 |
| MluNI | TGGCCA | 3 cut(s) | 41, 1200, 1269 |
| MlyI | GAGTC | 5 cut(s) | 92, 527, 899, 1121, 2624 |
| MmeI | TCCRAC | 3 cut(s) | 1612, 1990, 3160 |
| Mox20I | TGGCCA | 3 cut(s) | 41, 1200, 1269 |
| Mph1103I | ATGCAT | 1 cut(s) | 3372 |
| MroNI | GCCGGC | 1 cut(s) | 3489 |
| MroXI | GAANNNNTTC | 2 cut(s) | 313, 804 |
| MscI | TGGCCA | 3 cut(s) | 41, 1200, 1269 |
| MseI | TTAA | 9 cut(s) | 465, 539, 875, 1080, 1500, 2354, 2495, 2823, 3018 |
| MslI | CAYNNNNRTG | 7 cut(s) | 126, 1812, 2130, 2916, 3247, 3375, 3430 |
| Msp20I | TGGCCA | 3 cut(s) | 41, 1200, 1269 |
| MspA1I | CMGCKG | 3 cut(s) | 7, 1262, 3476 |
| MspI | CCGG | 4 cut(s) | 3286, 3345, 3490, 3558 |
| MspR9I | CCNGG | 2 cut(s) | 619, 3287 |
| MunI | CAATTG | 2 cut(s) | 2465, 2864 |
| Mva1269I | GAATGC | 2 cut(s) | 2517, 3094 |
| MvaI | CCWGG | 1 cut(s) | 619 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 411, 1850, 2430, 2975, 3049, 3068 |
| NaeI | GCCGGC | 1 cut(s) | 3491 |
| NciI | CCSGG | 1 cut(s) | 3287 |
| NcoI | CCATGG | 1 cut(s) | 3248 |
| NdeI | CATATG | 3 cut(s) | 738, 2319, 2767 |
| NgoMIV | GCCGGC | 1 cut(s) | 3489 |
| NheI | GCTAGC | 1 cut(s) | 2111 |
| NlaIV | GGNNCC | 8 cut(s) | 1387, 1911, 1959, 2998, 3156, 3258, 3354, 3379 |
| NmuCI | GTSAC | 5 cut(s) | 1220, 1280, 1488, 2278, 3128 |
| NsiI | ATGCAT | 1 cut(s) | 3372 |
| NspI | RCATGY | 6 cut(s) | 1345, 1411, 1418, 1860, 2549, 3011 |
| OliI | CACNNNNGTG | 2 cut(s) | 2130, 3430 |
| PaeI | GCATGC | 2 cut(s) | 1411, 3011 |
| PagI | TCATGA | 2 cut(s) | 1723, 1810 |
| PaqCI | CACCTGC | 1 cut(s) | 1849 |
| PceI | AGGCCT | 2 cut(s) | 622, 2103 |
| PciI | ACATGT | 1 cut(s) | 2545 |
| PciSI | GCTCTTC | 1 cut(s) | 690 |
| PctI | GAATGC | 2 cut(s) | 2517, 3094 |
| PdiI | GCCGGC | 1 cut(s) | 3491 |
| PdmI | GAANNNNTTC | 2 cut(s) | 313, 804 |
| PfeI | GAWTC | 8 cut(s) | 1427, 1688, 1925, 2471, 2558, 2660, 3201, 3437 |
| PleI | GAGTC | 5 cut(s) | 91, 526, 898, 1120, 2623 |
| PpsI | GAGTC | 5 cut(s) | 91, 526, 898, 1120, 2623 |
| Ppu21I | YACGTR | 1 cut(s) | 662 |
| PscI | ACATGT | 1 cut(s) | 2545 |
| PsiI | TTATAA | 2 cut(s) | 1508, 3056 |
| Psp6I | CCWGG | 1 cut(s) | 617 |
| PspGI | CCWGG | 1 cut(s) | 617 |
| PspN4I | GGNNCC | 8 cut(s) | 1387, 1911, 1959, 2998, 3156, 3258, 3354, 3379 |
| PspPI | GGNCC | 3 cut(s) | 1957, 2177, 2461 |
| PstI | CTGCAG | 2 cut(s) | 1918, 2488 |
| PsuI | RGATCY | 8 cut(s) | 280, 766, 802, 1363, 2756, 2892, 2996, 3154 |
| PvuII | CAGCTG | 3 cut(s) | 7, 1262, 3476 |
| RsaI | GTAC | 6 cut(s) | 138, 207, 265, 1602, 2764, 2943 |
| RsaNI | GTAC | 6 cut(s) | 137, 206, 264, 1601, 2763, 2942 |
| RseI | CAYNNNNRTG | 7 cut(s) | 126, 1812, 2130, 2916, 3247, 3375, 3430 |
| SapI | GCTCTTC | 1 cut(s) | 690 |
| SaqAI | TTAA | 9 cut(s) | 465, 539, 875, 1080, 1500, 2354, 2495, 2823, 3018 |
| Sau96I | GGNCC | 3 cut(s) | 1957, 2177, 2461 |
| SchI | GAGTC | 5 cut(s) | 92, 527, 899, 1121, 2624 |
| ScrFI | CCNGG | 2 cut(s) | 619, 3287 |
| SduI | GDGCHC | 2 cut(s) | 59, 2247 |
| SfcI | CTRYAG | 3 cut(s) | 1914, 2484, 2973 |
| SinI | GGWCC | 2 cut(s) | 1957, 2177 |
| SmiI | ATTTAAAT | 1 cut(s) | 540 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 126, 1812, 2130, 2916, 3247, 3375, 3430 |
| SmlI | CTYRAG | 3 cut(s) | 2297, 3002, 3148 |
| SmoI | CTYRAG | 3 cut(s) | 2297, 3002, 3148 |
| SphI | GCATGC | 2 cut(s) | 1411, 3011 |
| SseBI | AGGCCT | 2 cut(s) | 622, 2103 |
| SsiI | CCGC | 4 cut(s) | 185, 1568, 1853, 2262 |
| SspI | AATATT | 1 cut(s) | 3106 |
| SspMI | CTAG | 6 cut(s) | 624, 1986, 2112, 2406, 3014, 3140 |
| StuI | AGGCCT | 2 cut(s) | 622, 2103 |
| StyD4I | CCNGG | 2 cut(s) | 617, 3285 |
| StyI | CCWWGG | 3 cut(s) | 159, 1595, 3248 |
| SwaI | ATTTAAAT | 1 cut(s) | 540 |
| TaaI | ACNGT | 9 cut(s) | 268, 1246, 1741, 1951, 2284, 2776, 2974, 3429, 3541 |
| TaiI | ACGT | 2 cut(s) | 338, 664 |
| TaqI | TCGA | 5 cut(s) | 86, 375, 475, 2598, 3412 |
| TaqII | GACCGA | 1 cut(s) | 534 |
| TatI | WGTACW | 2 cut(s) | 136, 263 |
| TauI | GCSGC | 1 cut(s) | 1856 |
| TfiI | GAWTC | 8 cut(s) | 1427, 1688, 1925, 2471, 2558, 2660, 3201, 3437 |
| Tru1I | TTAA | 9 cut(s) | 465, 539, 875, 1080, 1500, 2354, 2495, 2823, 3018 |
| Tru9I | TTAA | 9 cut(s) | 465, 539, 875, 1080, 1500, 2354, 2495, 2823, 3018 |
| TseFI | GTSAC | 5 cut(s) | 1220, 1280, 1488, 2278, 3128 |
| Tsp45I | GTSAC | 5 cut(s) | 1220, 1280, 1488, 2278, 3128 |
| TspGWI | ACGGA | 1 cut(s) | 880 |
| VpaK11BI | GGWCC | 2 cut(s) | 1957, 2177 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 213 |
| XceI | RCATGY | 6 cut(s) | 1345, 1411, 1418, 1860, 2549, 3011 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1124, 1243, 1593 |
| XmiI | GTMKAC | 1 cut(s) | 1253 |
| XmnI | GAANNNNTTC | 2 cut(s) | 313, 804 |
| XspI | CTAG | 6 cut(s) | 624, 1986, 2112, 2406, 3014, 3140 |
| Zsp2I | ATGCAT | 1 cut(s) | 3372 |