RLG00000012662

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0009051
Physical Location & Seq
Forward (+)
21029355 .. 21035303
5949 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012662

Sequence Viewer

Length: 3609 bp
ATGCAGCTAAGTAGGTCTGAGAACTTGCTTGGTACCATGACTGGTGAGGTGTCATGCTCATCAGGTCAATGGATCCAGCAAGAGTCGACCCCAGTAGTCCAGAATATGGGAAAGAATGTGCGCAGAAATGTCTCTGTACAGACGGGGGAGGAGTTTTCCTTGGAGTTTCTTCAGGATTGTGGTGCGGTGAGAAGAGTTCCTTCTGCACCTGATACAGTTCTGAATTGTGAAAAGGGGGCTGGATTGAATTATAATCAGAATTCTACAGTGGCATATCAGGATCTTACCGGTATTTTGGGGTTGACGAAAATGGAGTCTGAGTGTGCATCTGACACATCTGAGTTTGTAGTGGCAAATGGGTCATGTAAAGAGATTGAAAATGAGGCTCATGTTGATAAGCTAAGCAGACACAGCGTGAAGGAGGTTGATGGTGGAGAAGGATCAAGGAAGGCTGTTGGAGAACTAAATTTTGATCGAGCTGGTTTTCGGCCAACTGCTCCACCTGTGAACGTGTCTGAGTCTCCTCATTCTAACAACTTTAATCGGTCAGGAGTGTTGCATGGTTCTCAGTCTGGGAAGATGAAATTTCTTTGCAGTTTTGGTGGAAAGATTTTACCGAGGCCTAGTGATGGGAAACTCAGATATGTTGGGGGAGAGACGCGTTTTATTTCTATTAGGAATGGTGTTTCATGGGAAGAGCTTGTGAAGAAAACTTCCGGTTTTTGCAGCCAGCCTCATATGATAAAATACCAGCTTCCAAATGAGGATCTTGATGCTCTTATATCTGTGTCATCTGATGAAGATCTTCAAAATATGATAGAGGAGTATCATGGGCTTGAAAGGCATGAGAGTTCTCAGAGGCCACGGGTCTTTTTGATTCCTCTGGGTGAGTCTGAAAATTGTTCCATTGAGGTTGACACCATACATTCGAGTAACCCTGATTACCAATATGTTGCTGCTGTAAATGATTTGGTAGATCCAAGTTCTAGGAAAACTAGTGGAGGACAGAATTTGAGTAGTGAAGCAAGTCAACAGGGAACAAAGACTTCGGTATTCCATAAGGAGATTCAGAGTAATTTTAAAGCCTTACATCATAGTCAAATTTTGAGTGAGTCCCAGAATATGACTGGGTCTTCAATTCAATCACCTCTTTCTCCTATTCCACATCAACAAGCTGATGATAGGCAATGGGGCCAATCTCATGGAGGGCATTGTCACAACCACAATCACAGCAAAACTGTGGTGTCTACTTCAGCTGTTGGCCAAAACTTTGGTGACTTTGATGGGTTCTCCCGTGAGATGCCAGTGCATAAGGAAAGTAGATTTCTTTCCGACAAGCCTGTCTCACAGCCAGAAGATCTAATAGCTCAGTTGTCAGGTTCCATTGGTTGTCATCATGGCATGCCACATGCACTTTCTGATTCAAAACTACAAGAGAATGGAGGGAGGTCTGCATACTGTTCTCAAGAAGGAATGAACTTATCACACTCCTTAAACTTTGCAAACGCTCAATTGTTATCATTCCAGAACTCAGGAATTGCACAAGAAAAGCCAACCCAACTGCATGAAAACAGTGACCCTTTCAATCCTTGGGTACAAAACAAGTTAGAGGATATTGAGTCTGTAGGACTGCAGAGAAGACTGGATTTGCCAAATTCTTCTCCATGTTTAGAATCATTGGGCAGGAATGAACATACTCAGAACGGTTCTGGTGACGTTCATGACAAATTCCGAACAGCTATAAACAAAGATTCTATGACTTTGGAACTCCCAAATAAGTTGAACGAAAAGGATATTTTCTTTCATCGTGATGACACCCTTTATGGGGAAAGATCACCTGTCACTGGGGTGGAATGTCCGAAGAGATTGCCTAATATAAACCCCAATATAACATCTACTTTTGCCTCTGGGGTTGTGGTTCCTGCAGCCAGTGATTTCATACCTTTGGTAGATAATACAGTGCATGACCCCAAGAACTTCCAACTTGGCAAAACCCCTGCCAGTCTTCTTGTCACGAGTGAAGCAACTGCCAATGACCAGGATTGTGCTTTGACAGGGATGGTAAATGTTGAACAAGGACACGCTGTTTCAGGGGCTAAGAATCCTGAAGTTTCTGGCCGATTTCCAAGCACTAGAGAACACTCCTGTGATGGATGTTCTTTGGGTGATCTAATCTCAGGGTTGTCCGATGGACCAATTTCCCATGAACCTGTACATCCACAATTTGTTGCAAGTCAACATGATATAGGTTTCCAAGAACCCCTGCTCACAAGCTCTGCAAATTTTTACCCATCGACGGTTCTTGATGATCTTGAGTTCCAAAAGAGTGATCATATGGTGTTGCAGAAGCCAATCCAAATTGCTGCTTTTAAAAGAGAAGTATCCCTCCTTGATGATGATTTTGTGTGTTATCCTGCTACCAGTGTTGAGAATTTGAGCTTGAATGGCGAAAATGTCTCTTTGGCACAAACACAAGCCCAAACAATGAGTAATCATAAGGGACAGTTGGACACAGTAATAACTGAGGAAGATGTAAACAGTGGTGTTACTCCTGGCATTCAGTCTTTATTCGTGGTGCCCCCATATGTTGTTGACGAATCCATTGGTGATCTCATATCCCCAACTGCAACAGAGGTGGAGAGCATCATTCAAGAGTCTGAGTTTGAGGATGATAAGGGTGATATGGGAGACAAGAATAATTCATTTAGTGACGCAATGATAGTTGAAATGGAAGCCACCCTCTATGGTTTGCAGATCATTAGAAATGCTGATCTTGAAGAACAACGGGAATTGGGATCTGGTACATATGGAACTGTTTATCACGGAAAATGGCGGGGATCGGATGTTGCTATAAAGAGAATTAAAAAGGGCTGCTTTGCAGGGAGATCATCAGAGAAAGATCAATTGACAAAAGACTTTTGGAGAGAGGCACAGATCCTTTCAAATCTTCATCATCCAAATGTGGTTGCATTTTATGGGATAGTACCTGATGGAGCAGGAGGAACATTAGCAACTGTAGCTGAATATATGGTGAATGGATCCCTTAGGCATGCCCTACTTAAGAAGAATAGATCACTTGACCGGCGTAAAAAGCTTATAATTGCTATGGATGCAGCTTTTGGCATGGAATACTTGCATTCAAAGAATATTGTCCATTTTGATTTGAAGTGTGACAATTTGCTAGTCAACTTGAGGGATCCTCAACGACCTATATGTAAGGTTGGAGATTTTGGATTATCAAGAATCAAACGCAATACTTTGGTATCTGGTGGTGTTCGAGGAACACTTCCATGGATGGCACCAGAATTGTTGAACGGTAGCAGCAGCCGGGTCTCCGAGAAGGTTGATGTTTTCTCATTTGGAATTTCAATGTGGGAGATCTTGACTGGAGAGGAACCATATGCAAATATGCATTGTGGTGCCATCATTGGGGGAATTGTAAAGAACACTCTTCGACCACCTATTCCAGAGCGATGTGATGCTGAGTGGAGGACGCTAATGGAAGAGTGCTGGTCACCTGATCCAGAAAGTCGGCCGTCATTTACTGAGATAACTAACAAGTTGCGAGCTATGTCTAACACACTTCAGGGAACGGCTTCTGGTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
PB1 Pkinase_Tyr

Protein Analysis

1203

Amino Acids

131.79

Weight (kDa)

5.33

Isoelectric Point (pI)

47.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 210 - 292 2.1e-19 PB1 domain
PK_Tyr_Ser-Thr PF07714 926 - 1188 6.2e-64 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 926 - 1186 1.4e-48 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 252, 3098
AasI GACNNNNNNGTC 1 cut(s) 1340
Acc16I TGCGCA 1 cut(s) 122
Acc65I GGTACC 1 cut(s) 32
AccB1I GGYRCC 4 cut(s) 32, 2575, 3298, 3419
AccB7I CCANNNNNTGG 1 cut(s) 106
AccI GTMKAC 2 cut(s) 86, 1247
AccII CGCG 1 cut(s) 661
AciI CCGC 2 cut(s) 185, 2833
AcoI YGGCCR 4 cut(s) 488, 1261, 2116, 3533
AcuI CTGAAG 4 cut(s) 155, 1236, 2127, 3569
AdeI CACNNNGTG 1 cut(s) 415
AfaI GTAC 7 cut(s) 34, 138, 1596, 2214, 2803, 2985, 3604
AfiI CCNNNNNNNGG 7 cut(s) 106, 629, 1824, 1825, 1844, 2296, 3429
AflII CTTAAG 1 cut(s) 3059
AflIII ACRYGT 2 cut(s) 510, 659
AgeI ACCGGT 1 cut(s) 287
AhlI ACTAGT 1 cut(s) 995
AjnI CCWGG 2 cut(s) 2037, 2551
AleI CACNNNNGTG 2 cut(s) 1847, 2145
Alw26I GTCTC 7 cut(s) 136, 525, 650, 1348, 2461, 2682, 3337
AoxI GGCC 7 cut(s) 488, 620, 860, 1192, 1261, 2116, 3533
ApeKI GCWGC 9 cut(s) 4, 726, 956, 1925, 2363, 2871, 3113, 3321, 3324
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AsiGI ACCGGT 1 cut(s) 287
Asp700I GAANNNNTTC 2 cut(s) 804, 3595
Asp718I GGTACC 1 cut(s) 32
AspLEI GCGC 1 cut(s) 123
AspS9I GGNCC 2 cut(s) 1192, 2192
AsuC2I CCSGG 1 cut(s) 3329
AvaII GGWCC 1 cut(s) 2192
AxyI CCTNAGG 1 cut(s) 3044
BaeGI GKGCMC 1 cut(s) 2580
BaeI ACNNNNGTAYC 2 cut(s) 3246, 3279
BalI TGGCCA 1 cut(s) 1263
BamHI GGATCC 3 cut(s) 72, 3038, 3196
BanI GGYRCC 4 cut(s) 32, 2575, 3298, 3419
BauI CACGAG 1 cut(s) 2014
BbsI GAAGAC 3 cut(s) 1125, 1645, 1997
BbvI GCAGC 9 cut(s) 16, 738, 943, 1937, 2350, 2858, 3125, 3333, 3336
BceAI ACGGC 1 cut(s) 3520
BcgI CGANNNNNNTGC 2 cut(s) 1849, 1883
BciT130I CCWGG 2 cut(s) 2039, 2553
BciVI GTATCC 1 cut(s) 2392
BclI TGATCA 1 cut(s) 2329
BcnI CCSGG 1 cut(s) 3329
BcoDI GTCTC 7 cut(s) 136, 525, 650, 1348, 2461, 2682, 3337
BcuI ACTAGT 1 cut(s) 995
BfaI CTAG 5 cut(s) 624, 987, 996, 2133, 3182
BfmI CTRYAG 5 cut(s) 264, 1623, 1631, 1923, 3015
BfrI CTTAAG 1 cut(s) 3059
BfuI GTATCC 1 cut(s) 2392
BglII AGATCT 3 cut(s) 802, 1357, 3378
BisI GCNGC 9 cut(s) 5, 727, 957, 1926, 2364, 2872, 3114, 3322, 3325
BlpI GCTNAGC 1 cut(s) 401
BlsI GCNGC 9 cut(s) 6, 728, 958, 1927, 2365, 2873, 3115, 3323, 3326
Bme1390I CCNGG 3 cut(s) 2039, 2553, 3329
Bme18I GGWCC 1 cut(s) 2192
BmgT120I GGNCC 2 cut(s) 1192, 2192
BmrFI CCNGG 3 cut(s) 2039, 2553, 3329
BmrI ACTGGG 3 cut(s) 86, 1137, 1854
BmsI GCATC 6 cut(s) 335, 763, 1290, 2652, 3100, 3469
BmuI ACTGGG 3 cut(s) 86, 1137, 1854
BpiI GAAGAC 3 cut(s) 1125, 1645, 1997
BplI GAGNNNNNCTC 2 cut(s) 3184, 3216
BpmI CTGGAG 1 cut(s) 3408
Bpu1102I GCTNAGC 1 cut(s) 401
BpuEI CTTGAG 3 cut(s) 1449, 2333, 3211
BpuMI CCSGG 1 cut(s) 3329
BsaAI YACGTR 1 cut(s) 3606
BsaBI GATNNNNATC 1 cut(s) 801
BsaI GGTCTC 1 cut(s) 3337
BsaJI CCNNGG 5 cut(s) 159, 617, 863, 1589, 3290
BsaWI WCCGGW 2 cut(s) 287, 716
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 7 cut(s) 106, 629, 1824, 1825, 1844, 2296, 3429
Bse118I RCCGGY 2 cut(s) 287, 3081
Bse21I CCTNAGG 1 cut(s) 3044
Bse3DI GCAATG 2 cut(s) 1193, 2721
Bse8I GATNNNNATC 1 cut(s) 801
BseBI CCWGG 2 cut(s) 2039, 2553
BseDI CCNNGG 5 cut(s) 159, 617, 863, 1589, 3290
BseGI GGATG 8 cut(s) 2064, 2159, 2215, 2674, 2848, 2953, 3115, 3300
BseJI GATNNNNATC 1 cut(s) 801
BseLI CCNNNNNNNGG 7 cut(s) 106, 629, 1824, 1825, 1844, 2296, 3429
BseMI GCAATG 2 cut(s) 1193, 2721
BseRI GAGGAG 3 cut(s) 164, 513, 836
BseSI GKGCMC 1 cut(s) 2580
BseX3I CGGCCG 1 cut(s) 3533
BseXI GCAGC 9 cut(s) 16, 738, 943, 1937, 2350, 2858, 3125, 3333, 3336
BsgI GTGCAG 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 661
Bsh1285I CGRYCG 1 cut(s) 3536
BshFI GGCC 7 cut(s) 490, 622, 862, 1194, 1263, 2118, 3535
BshNI GGYRCC 4 cut(s) 32, 2575, 3298, 3419
BshTI ACCGGT 1 cut(s) 287
BsiEI CGRYCG 1 cut(s) 3536
BsiSI CCGG 4 cut(s) 288, 717, 3082, 3328
BslFI GGGAC 2 cut(s) 1099, 2514
BslI CCNNNNNNNGG 7 cut(s) 106, 629, 1824, 1825, 1844, 2296, 3429
BsmAI GTCTC 7 cut(s) 136, 525, 650, 1348, 2461, 2682, 3337
BsmBI CGTCTC 1 cut(s) 650
BsmFI GGGAC 2 cut(s) 1099, 2514
BsmI GAATGC 2 cut(s) 2556, 3136
BsnI GGCC 7 cut(s) 490, 622, 862, 1194, 1263, 2118, 3535
Bso31I GGTCTC 1 cut(s) 3337
Bsp1286I GDGCHC 1 cut(s) 2580
Bsp1407I TGTACA 2 cut(s) 136, 2212
Bsp1720I GCTNAGC 1 cut(s) 401
Bsp19I CCATGG 1 cut(s) 3290
BspACI CCGC 2 cut(s) 185, 2833
BspANI GGCC 7 cut(s) 490, 622, 862, 1194, 1263, 2118, 3535
BspFNI CGCG 1 cut(s) 661
BspHI TCATGA 1 cut(s) 1720
BspMAI CTGCAG 2 cut(s) 1635, 1927
BspQI GCTCTTC 1 cut(s) 690
BspT107I GGYRCC 4 cut(s) 32, 2575, 3298, 3419
BspTI CTTAAG 1 cut(s) 3059
BspTNI GGTCTC 1 cut(s) 3337
BsrDI GCAATG 2 cut(s) 1193, 2721
BsrFI RCCGGY 2 cut(s) 287, 3081
BsrGI TGTACA 2 cut(s) 136, 2212
BssAI RCCGGY 2 cut(s) 287, 3081
BssECI CCNNGG 5 cut(s) 159, 617, 863, 1589, 3290
BssSI CACGAG 1 cut(s) 2014
BssT1I CCWWGG 3 cut(s) 159, 1589, 3290
Bst2BI CACGAG 1 cut(s) 2014
Bst2UI CCWGG 2 cut(s) 2039, 2553
Bst6I CTCTTC 5 cut(s) 187, 690, 1856, 3456, 3498
BstAFI CTTAAG 1 cut(s) 3059
BstAUI TGTACA 2 cut(s) 136, 2212
BstBAI YACGTR 1 cut(s) 3606
BstC8I GCNNGC 4 cut(s) 731, 1403, 3051, 3567
BstDSI CCRYGG 2 cut(s) 863, 3290
BstEII GGTNACC 1 cut(s) 3513
BstF5I GGATG 8 cut(s) 2064, 2159, 2215, 2674, 2848, 2953, 3115, 3300
BstFNI CGCG 1 cut(s) 661
BstHHI GCGC 1 cut(s) 123
BstMAI GTCTC 7 cut(s) 136, 525, 650, 1348, 2461, 2682, 3337
BstMCI CGRYCG 1 cut(s) 3536
BstMWI GCNNNNNNNGC 6 cut(s) 411, 841, 2445, 3017, 3091, 3110
BstNI CCWGG 2 cut(s) 2039, 2553
BstNSI RCATGY 3 cut(s) 1405, 1412, 3053
BstPI GGTNACC 1 cut(s) 3513
BstSCI CCNGG 3 cut(s) 2037, 2551, 3327
BstSFI CTRYAG 5 cut(s) 264, 1623, 1631, 1923, 3015
BstSLI GKGCMC 1 cut(s) 2580
BstSNI TACGTA 1 cut(s) 3606
BstUI CGCG 1 cut(s) 661
BstV1I GCAGC 9 cut(s) 16, 738, 943, 1937, 2350, 2858, 3125, 3333, 3336
BstV2I GAAGAC 3 cut(s) 1125, 1645, 1997
BstXI CCANNNNNNTGG 2 cut(s) 1202, 1271
BstZI CGGCCG 1 cut(s) 3533
Bsu36I CCTNAGG 1 cut(s) 3044
BsuI GTATCC 1 cut(s) 2392
BsuRI GGCC 7 cut(s) 490, 622, 862, 1194, 1263, 2118, 3535
BtgI CCRYGG 2 cut(s) 863, 3290
BtgZI GCGATG 1 cut(s) 3487
BtsCI GGATG 8 cut(s) 2064, 2159, 2215, 2674, 2848, 2953, 3115, 3300
BtsIMutI CAGTG 8 cut(s) 273, 1311, 1579, 1842, 1936, 1965, 2428, 2545
Cac8I GCNNGC 4 cut(s) 731, 1403, 3051, 3567
CciI TCATGA 1 cut(s) 1720
CfoI GCGC 1 cut(s) 123
Cfr10I RCCGGY 2 cut(s) 287, 3081
Cfr13I GGNCC 2 cut(s) 1192, 2192
CseI GACGC 3 cut(s) 667, 2720, 3502
Csp6I GTAC 7 cut(s) 33, 137, 1595, 2213, 2802, 2984, 3603
CspAI ACCGGT 1 cut(s) 287
CspCI CAANNNNNGTGG 2 cut(s) 2616, 2651
CviQI GTAC 7 cut(s) 33, 137, 1595, 2213, 2802, 2984, 3603
DraI TTTAAA 2 cut(s) 1081, 2371
DraIII CACNNNGTG 1 cut(s) 415
DrdI GACNNNNNNGTC 1 cut(s) 1340
DseDI GACNNNNNNGTC 1 cut(s) 1340
EaeI YGGCCR 4 cut(s) 488, 1261, 2116, 3533
EagI CGGCCG 1 cut(s) 3533
Eam1104I CTCTTC 5 cut(s) 187, 690, 1856, 3456, 3498
EarI CTCTTC 5 cut(s) 187, 690, 1856, 3456, 3498
EclXI CGGCCG 1 cut(s) 3533
Eco105I TACGTA 1 cut(s) 3606
Eco130I CCWWGG 3 cut(s) 159, 1589, 3290
Eco147I AGGCCT 1 cut(s) 622
Eco31I GGTCTC 1 cut(s) 3337
Eco47I GGWCC 1 cut(s) 2192
Eco52I CGGCCG 1 cut(s) 3533
Eco57I CTGAAG 4 cut(s) 155, 1236, 2127, 3569
Eco81I CCTNAGG 1 cut(s) 3044
Eco91I GGTNACC 1 cut(s) 3513
EcoO65I GGTNACC 1 cut(s) 3513
EcoRI GAATTC 1 cut(s) 259
EcoRII CCWGG 2 cut(s) 2037, 2551
EcoT14I CCWWGG 3 cut(s) 159, 1589, 3290
EcoT22I ATGCAT 1 cut(s) 3414
ErhI CCWWGG 3 cut(s) 159, 1589, 3290
Esp3I CGTCTC 1 cut(s) 650
FalI AAGNNNNNCTT 4 cut(s) 184, 216, 2858, 2890
FaqI GGGAC 2 cut(s) 1099, 2514
FauI CCCGC 1 cut(s) 2826
FauNDI CATATG 5 cut(s) 738, 2334, 2584, 2806, 3400
FbaI TGATCA 1 cut(s) 2329
FblI GTMKAC 2 cut(s) 86, 1247
Fnu4HI GCNGC 9 cut(s) 5, 727, 957, 1926, 2364, 2872, 3114, 3322, 3325
FokI GGATG 8 cut(s) 2071, 2166, 2202, 2681, 2855, 2940, 3122, 3307
Fsp4HI GCNGC 9 cut(s) 5, 727, 957, 1926, 2364, 2872, 3114, 3322, 3325
FspBI CTAG 5 cut(s) 624, 987, 996, 2133, 3182
FspI TGCGCA 1 cut(s) 122
GlaI GCGC 1 cut(s) 122
GluI GCNGC 9 cut(s) 5, 727, 957, 1926, 2364, 2872, 3114, 3322, 3325
GsuI CTGGAG 1 cut(s) 3408
HaeIII GGCC 7 cut(s) 490, 622, 862, 1194, 1263, 2118, 3535
HapII CCGG 4 cut(s) 288, 717, 3082, 3328
HgaI GACGC 3 cut(s) 667, 2720, 3502
HhaI GCGC 1 cut(s) 123
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HincII GTYRAC 7 cut(s) 87, 303, 916, 1031, 2237, 2593, 3187
HindII GTYRAC 7 cut(s) 87, 303, 916, 1031, 2237, 2593, 3187
HindIII AAGCTT 1 cut(s) 3092
HpaII CCGG 4 cut(s) 288, 717, 3082, 3328
Hpy99I CGWCG 1 cut(s) 2299
HpyAV CCTTC 6 cut(s) 210, 412, 431, 442, 1463, 3334
HpyCH4IV ACGT 3 cut(s) 510, 1716, 3605
HpyF10VI GCNNNNNNNGC 6 cut(s) 411, 841, 2445, 3017, 3091, 3110
HpySE526I ACGT 3 cut(s) 510, 1716, 3605
HspAI GCGC 1 cut(s) 121
KpnI GGTACC 1 cut(s) 36
Ksp22I TGATCA 1 cut(s) 2329
LguI GCTCTTC 1 cut(s) 690
LmnI GCTCC 2 cut(s) 502, 2993
Lsp1109I GCAGC 9 cut(s) 16, 738, 943, 1937, 2350, 2858, 3125, 3333, 3336
LweI GCATC 6 cut(s) 335, 763, 1290, 2652, 3100, 3469
MaeI CTAG 5 cut(s) 624, 987, 996, 2133, 3182
MaeII ACGT 3 cut(s) 510, 1716, 3605
MfeI CAATTG 2 cut(s) 1511, 2903
MhlI GDGCHC 1 cut(s) 2580
MlsI TGGCCA 1 cut(s) 1263
MluI ACGCGT 1 cut(s) 659
MluNI TGGCCA 1 cut(s) 1263
MlyI GAGTC 7 cut(s) 92, 323, 527, 899, 1121, 1628, 2663
MmeI TCCRAC 5 cut(s) 436, 1356, 2005, 2487, 3202
Mox20I TGGCCA 1 cut(s) 1263
Mph1103I ATGCAT 1 cut(s) 3414
MroXI GAANNNNTTC 2 cut(s) 804, 3595
MscI TGGCCA 1 cut(s) 1263
MseI TTAA 6 cut(s) 540, 1080, 1493, 2370, 2862, 3060
MslI CAYNNNNRTG 6 cut(s) 1809, 1847, 2145, 2958, 3289, 3417
Msp20I TGGCCA 1 cut(s) 1263
MspA1I CMGCKG 1 cut(s) 1256
MspCI CTTAAG 1 cut(s) 3059
MspI CCGG 4 cut(s) 288, 717, 3082, 3328
MspR9I CCNGG 3 cut(s) 2039, 2553, 3329
MunI CAATTG 2 cut(s) 1511, 2903
Mva1269I GAATGC 2 cut(s) 2556, 3136
MvaI CCWGG 2 cut(s) 2039, 2553
MvnI CGCG 1 cut(s) 661
MwoI GCNNNNNNNGC 6 cut(s) 411, 841, 2445, 3017, 3091, 3110
NciI CCSGG 1 cut(s) 3329
NcoI CCATGG 1 cut(s) 3290
NdeI CATATG 5 cut(s) 738, 2334, 2584, 2806, 3400
NmuCI GTSAC 9 cut(s) 1214, 1274, 1574, 1712, 1840, 2011, 2708, 3170, 3513
NsbI TGCGCA 1 cut(s) 122
NsiI ATGCAT 1 cut(s) 3414
NspI RCATGY 3 cut(s) 1405, 1412, 3053
OliI CACNNNNGTG 2 cut(s) 1847, 2145
PaeI GCATGC 2 cut(s) 1405, 3053
PagI TCATGA 1 cut(s) 1720
PceI AGGCCT 1 cut(s) 622
PciSI GCTCTTC 1 cut(s) 690
PctI GAATGC 2 cut(s) 2556, 3136
PdmI GAANNNNTTC 2 cut(s) 804, 3595
PfeI GAWTC 8 cut(s) 877, 1066, 1421, 1673, 1751, 2101, 2597, 3243
PflFI GACNNNGTC 1 cut(s) 1129
PflMI CCANNNNNTGG 1 cut(s) 106
PinAI ACCGGT 1 cut(s) 287
PkrI GCNGC 9 cut(s) 6, 728, 958, 1927, 2365, 2873, 3115, 3323, 3326
PleI GAGTC 7 cut(s) 91, 322, 526, 898, 1120, 1627, 2662
PpsI GAGTC 7 cut(s) 91, 322, 526, 898, 1120, 1627, 2662
Ppu21I YACGTR 1 cut(s) 3606
PsiI TTATAA 2 cut(s) 252, 3098
Psp6I CCWGG 2 cut(s) 2037, 2551
PspEI GGTNACC 1 cut(s) 3513
PspGI CCWGG 2 cut(s) 2037, 2551
PspPI GGNCC 2 cut(s) 1192, 2192
PstI CTGCAG 2 cut(s) 1635, 1927
PsyI GACNNNGTC 1 cut(s) 1129
PvuII CAGCTG 1 cut(s) 1256
RsaI GTAC 7 cut(s) 34, 138, 1596, 2214, 2803, 2985, 3604
RsaNI GTAC 7 cut(s) 33, 137, 1595, 2213, 2802, 2984, 3603
RseI CAYNNNNRTG 6 cut(s) 1809, 1847, 2145, 2958, 3289, 3417
SalI GTCGAC 1 cut(s) 85
SapI GCTCTTC 1 cut(s) 690
SaqAI TTAA 6 cut(s) 540, 1080, 1493, 2370, 2862, 3060
SatI GCNGC 9 cut(s) 5, 727, 957, 1926, 2364, 2872, 3114, 3322, 3325
Sau96I GGNCC 2 cut(s) 1192, 2192
SchI GAGTC 7 cut(s) 92, 323, 527, 899, 1121, 1628, 2663
ScrFI CCNGG 3 cut(s) 2039, 2553, 3329
SduI GDGCHC 1 cut(s) 2580
SfaNI GCATC 6 cut(s) 335, 763, 1290, 2652, 3100, 3469
SfcI CTRYAG 5 cut(s) 264, 1623, 1631, 1923, 3015
SinI GGWCC 1 cut(s) 2192
SmiMI CAYNNNNRTG 6 cut(s) 1809, 1847, 2145, 2958, 3289, 3417
SmlI CTYRAG 4 cut(s) 1464, 2312, 3059, 3190
SmoI CTYRAG 4 cut(s) 1464, 2312, 3059, 3190
SnaBI TACGTA 1 cut(s) 3606
SpeI ACTAGT 1 cut(s) 995
SphI GCATGC 2 cut(s) 1405, 3053
SseBI AGGCCT 1 cut(s) 622
SsiI CCGC 2 cut(s) 185, 2833
SspI AATATT 1 cut(s) 3148
SspMI CTAG 5 cut(s) 624, 987, 996, 2133, 3182
StuI AGGCCT 1 cut(s) 622
StyD4I CCNGG 3 cut(s) 2037, 2551, 3327
StyI CCWWGG 3 cut(s) 159, 1589, 3290
TaiI ACGT 3 cut(s) 513, 1719, 3608
TaqI TCGA 6 cut(s) 86, 475, 929, 2294, 3277, 3454
TaqII GACCGA 1 cut(s) 534
TatI WGTACW 2 cut(s) 136, 2212
TfiI GAWTC 8 cut(s) 877, 1066, 1421, 1673, 1751, 2101, 2597, 3243
Tru1I TTAA 6 cut(s) 540, 1080, 1493, 2370, 2862, 3060
Tru9I TTAA 6 cut(s) 540, 1080, 1493, 2370, 2862, 3060
TscAI CASTG 8 cut(s) 273, 1311, 1579, 1849, 1936, 1965, 2428, 2545
TseFI GTSAC 9 cut(s) 1214, 1274, 1574, 1712, 1840, 2011, 2708, 3170, 3513
TseI GCWGC 9 cut(s) 4, 726, 956, 1925, 2363, 2871, 3113, 3321, 3324
Tsp45I GTSAC 9 cut(s) 1214, 1274, 1574, 1712, 1840, 2011, 2708, 3170, 3513
TspGWI ACGGA 1 cut(s) 2838
TspRI CASTG 8 cut(s) 273, 1311, 1579, 1849, 1936, 1965, 2428, 2545
Tth111I GACNNNGTC 1 cut(s) 1129
Van91I CCANNNNNTGG 1 cut(s) 106
Vha464I CTTAAG 1 cut(s) 3059
VpaK11BI GGWCC 1 cut(s) 2192
XceI RCATGY 3 cut(s) 1405, 1412, 3053
XcmI CCANNNNNNNNNTGG 1 cut(s) 1124
XmiI GTMKAC 2 cut(s) 86, 1247
XmnI GAANNNNTTC 2 cut(s) 804, 3595
XspI CTAG 5 cut(s) 624, 987, 996, 2133, 3182
Zsp2I ATGCAT 1 cut(s) 3414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.