Rmu_co8416369.1_g000001

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8416369.1
OG0009051
Physical Location & Seq
Forward (+)
1 .. 1377
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8416369.1_g000001.1.cds

Sequence Viewer

Length: 1377 bp
tgactgggtcttcaattcaatcacctctttctcctattccacatcaacaagctgatgataggcaatggggccaatctcatggagggcattgtcacaaccacaatcacagcaaaactgtggtgtctacttcagctgttggccaaaacgttggtgactttgatgggttctcctgcgagatgccagtgcataaggaaagtagatttctttccgacaagcctgtctcacagccagaagatctaatagctcaattgtcaggttccattggttgtcatcatggcatgccacatgcactttctgattcaaaactacaagagaatggagggaggtctgcatactgttctcaagaaggaatgaacttatcacactccttaaactttgcaaacgctcaattgttatcattccagaactcaggaattgcacaagaaaagccaacccaactgcatgaaaacagtgaccctttcaatccttgggtacaaaacaagttagaggatattgagtcggtaggactgcagagaagactggatttgccaaattcttctccatgtttagaatcattgggcaggaatgaacatactcagaatggttctggtgacgttcatgacaaattccgaacagctataaagaaagattctatgactttggaactcccaaataagttgaacgaaaaggatattttcttgcatcatgatgacaccctttatggggaaagatcacctgtcactgggttggaatgtccgaagagattgcctaatataaaccccaatataacatctacttttgcctctggggttgtggttcctgcagccagtgatttcatacctttggtagataatacagtgcatgaccccaagaacttccaacttggcaaaacccctgccagtcttcttgtcacgagtgaagcaactgccaatgaccaggattgtgctttgacagggatggtaaatgttgaacaaggacacgctgtttcagtggctaagaatcctgaagtttcaggccgatttccaagcactagagaacactcctgtgatgggcgttctttgggtgatctaatttcagggttgtccaatggaccaatttcccatgaacctgtacatccacaatttgttgcaagccaacatgatataggtttccaagaacccctgctcacaagctctgcaaatttttacccatcgacagttcctgatgatcttgagttccaaaagagtgatcatatggtgttgcagaagccaatccaaaatgctgctttcaaaagagaagtatccctccttgatgatgattttgtgtgttatcctgctaccagtgttgagaatttgagcttgaatggcgaaaatgtctctttggcacaaacacaagcccaaacaatgagtaatcataagg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
PB1 Pkinase_Tyr

Protein Analysis

458

Amino Acids

49.84

Weight (kDa)

5.39

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 217
AccI GTMKAC 1 cut(s) 124
AclI AACGTT 1 cut(s) 146
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 4 cut(s) 531, 604, 1158, 1308
AcuI CTGAAG 2 cut(s) 113, 1004
AfaI GTAC 2 cut(s) 473, 1091
AfiI CCNNNNNNNGG 4 cut(s) 701, 702, 721, 1028
AgsI TTSAA 8 cut(s) 14, 19, 302, 462, 660, 949, 1248, 1320
AjnI CCWGG 1 cut(s) 914
AleI CACNNNNGTG 1 cut(s) 1022
AluBI AGCT 6 cut(s) 52, 133, 244, 616, 1151, 1316
AluI AGCT 6 cut(s) 52, 133, 244, 616, 1151, 1316
Alw26I GTCTC 2 cut(s) 225, 1338
AlwNI CAGNNNCTG 1 cut(s) 1180
AoxI GGCC 3 cut(s) 69, 138, 993
ApeKI GCWGC 2 cut(s) 802, 1240
ApoI RAATTY 4 cut(s) 531, 604, 1158, 1308
AspS9I GGNCC 2 cut(s) 69, 1069
AsuHPI GGTGA 5 cut(s) 14, 163, 601, 704, 1054
AvaII GGWCC 1 cut(s) 1069
BalI TGGCCA 1 cut(s) 140
BauI CACGAG 1 cut(s) 891
BbsI GAAGAC 3 cut(s) 2, 522, 874
BbvI GCAGC 2 cut(s) 814, 1227
BccI CCATC 4 cut(s) 154, 930, 1021, 1176
BcgI CGANNNNNNTGC 2 cut(s) 726, 760
BciT130I CCWGG 1 cut(s) 916
BciVI GTATCC 1 cut(s) 1269
BclI TGATCA 1 cut(s) 1206
BcoDI GTCTC 2 cut(s) 225, 1338
BfaI CTAG 1 cut(s) 1010
BfmI CTRYAG 2 cut(s) 508, 800
BfuI GTATCC 1 cut(s) 1269
BglII AGATCT 1 cut(s) 234
BisI GCNGC 2 cut(s) 803, 1241
BlsI GCNGC 2 cut(s) 804, 1242
Bme1390I CCNGG 1 cut(s) 916
Bme18I GGWCC 1 cut(s) 1069
BmgT120I GGNCC 2 cut(s) 69, 1069
BmiI GGNNCC 3 cut(s) 70, 258, 797
BmrFI CCNGG 1 cut(s) 916
BmrI ACTGGG 2 cut(s) 14, 731
BmsI GCATC 2 cut(s) 167, 690
BmuI ACTGGG 2 cut(s) 14, 731
BpiI GAAGAC 3 cut(s) 2, 522, 874
BpuEI CTTGAG 2 cut(s) 326, 1210
BsaJI CCNNGG 1 cut(s) 466
Bsc4I CCNNNNNNNGG 4 cut(s) 701, 702, 721, 1028
Bse1I ACTGG 7 cut(s) 9, 181, 524, 726, 806, 878, 1298
Bse3DI GCAATG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 916
BseDI CCNNGG 1 cut(s) 466
BseGI GGATG 2 cut(s) 941, 1092
BseLI CCNNNNNNNGG 4 cut(s) 701, 702, 721, 1028
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 2 cut(s) 422, 589
BseNI ACTGG 7 cut(s) 9, 181, 524, 726, 806, 878, 1298
BseXI GCAGC 2 cut(s) 814, 1227
BshFI GGCC 3 cut(s) 71, 140, 995
BslI CCNNNNNNNGG 4 cut(s) 701, 702, 721, 1028
BsmAI GTCTC 2 cut(s) 225, 1338
BsnI GGCC 3 cut(s) 71, 140, 995
Bsp1407I TGTACA 1 cut(s) 1089
Bsp143I GATC 5 cut(s) 234, 709, 1044, 1185, 1206
BspANI GGCC 3 cut(s) 71, 140, 995
BspCNI CTCAG 2 cut(s) 421, 588
BspHI TCATGA 2 cut(s) 597, 684
BspLI GGNNCC 3 cut(s) 70, 258, 797
BspMAI CTGCAG 2 cut(s) 512, 804
BsrDI GCAATG 1 cut(s) 70
BsrGI TGTACA 1 cut(s) 1089
BsrI ACTGG 7 cut(s) 9, 181, 524, 726, 806, 878, 1298
BssECI CCNNGG 1 cut(s) 466
BssMI GATC 5 cut(s) 234, 709, 1044, 1185, 1206
BssSI CACGAG 1 cut(s) 891
BssT1I CCWWGG 1 cut(s) 466
Bst2BI CACGAG 1 cut(s) 891
Bst2UI CCWGG 1 cut(s) 916
Bst4CI ACNGT 5 cut(s) 117, 337, 451, 837, 1176
Bst6I CTCTTC 1 cut(s) 733
BstAUI TGTACA 1 cut(s) 1089
BstC8I GCNNGC 2 cut(s) 280, 1110
BstDEI CTNAG 3 cut(s) 408, 575, 974
BstF5I GGATG 2 cut(s) 941, 1092
BstKTI GATC 5 cut(s) 237, 712, 1047, 1188, 1209
BstMAI GTCTC 2 cut(s) 225, 1338
BstMBI GATC 5 cut(s) 234, 709, 1044, 1185, 1206
BstMWI GCNNNNNNNGC 1 cut(s) 1322
BstNI CCWGG 1 cut(s) 916
BstNSI RCATGY 2 cut(s) 282, 289
BstSCI CCNGG 1 cut(s) 914
BstSFI CTRYAG 2 cut(s) 508, 800
BstV1I GCAGC 2 cut(s) 814, 1227
BstV2I GAAGAC 3 cut(s) 2, 522, 874
BstX2I RGATCY 1 cut(s) 234
BstXI CCANNNNNNTGG 2 cut(s) 79, 148
BstYI RGATCY 1 cut(s) 234
BsuI GTATCC 1 cut(s) 1269
BsuRI GGCC 3 cut(s) 71, 140, 995
BtsCI GGATG 2 cut(s) 941, 1092
BtsIMutI CAGTG 7 cut(s) 188, 456, 719, 813, 842, 974, 1305
Cac8I GCNNGC 2 cut(s) 280, 1110
CaiI CAGNNNCTG 1 cut(s) 1180
CciI TCATGA 2 cut(s) 597, 684
Cfr13I GGNCC 2 cut(s) 69, 1069
Csp6I GTAC 2 cut(s) 472, 1090
CviQI GTAC 2 cut(s) 472, 1090
DdeI CTNAG 3 cut(s) 408, 575, 974
DpnI GATC 5 cut(s) 236, 711, 1046, 1187, 1208
DpnII GATC 5 cut(s) 234, 709, 1044, 1185, 1206
DrdI GACNNNNNNGTC 1 cut(s) 217
DseDI GACNNNNNNGTC 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 733
EarI CTCTTC 1 cut(s) 733
Eco130I CCWWGG 1 cut(s) 466
Eco47I GGWCC 1 cut(s) 1069
Eco57I CTGAAG 2 cut(s) 113, 1004
EcoRII CCWGG 1 cut(s) 914
EcoT14I CCWWGG 1 cut(s) 466
ErhI CCWWGG 1 cut(s) 466
FauNDI CATATG 1 cut(s) 1211
FbaI TGATCA 1 cut(s) 1206
FblI GTMKAC 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 803, 1241
FokI GGATG 2 cut(s) 948, 1079
Fsp4HI GCNGC 2 cut(s) 803, 1241
FspBI CTAG 1 cut(s) 1010
GluI GCNGC 2 cut(s) 803, 1241
HaeIII GGCC 3 cut(s) 71, 140, 995
HinfI GANTC 5 cut(s) 298, 496, 550, 628, 978
HphI GGTGA 5 cut(s) 14, 163, 601, 704, 1054
Hpy166II GTNNAC 1 cut(s) 125
Hpy188I TCNGA 5 cut(s) 210, 297, 578, 610, 737
Hpy188III TCNNGA 9 cut(s) 343, 402, 410, 598, 685, 891, 982, 1180, 1189
Hpy8I GTNNAC 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 5 cut(s) 117, 337, 451, 837, 1176
HpyCH4IV ACGT 2 cut(s) 146, 593
HpyF10VI GCNNNNNNNGC 1 cut(s) 1322
HpyF3I CTNAG 3 cut(s) 408, 575, 974
HpySE526I ACGT 2 cut(s) 146, 593
Ksp22I TGATCA 1 cut(s) 1206
Kzo9I GATC 5 cut(s) 234, 709, 1044, 1185, 1206
Lsp1109I GCAGC 2 cut(s) 814, 1227
LweI GCATC 2 cut(s) 167, 690
MaeI CTAG 1 cut(s) 1010
MaeII ACGT 2 cut(s) 146, 593
MaeIII GTNAC 6 cut(s) 91, 151, 451, 589, 717, 888
MalI GATC 5 cut(s) 236, 711, 1046, 1187, 1208
MboI GATC 5 cut(s) 234, 709, 1044, 1185, 1206
MboII GAAGA 5 cut(s) 244, 527, 527, 750, 874
MfeI CAATTG 2 cut(s) 247, 388
MflI RGATCY 1 cut(s) 234
MlsI TGGCCA 1 cut(s) 140
MluNI TGGCCA 1 cut(s) 140
MlyI GAGTC 1 cut(s) 505
MmeI TCCRAC 3 cut(s) 233, 707, 882
MnlI CCTC 7 cut(s) 35, 76, 313, 317, 480, 792, 1273
Mox20I TGGCCA 1 cut(s) 140
MscI TGGCCA 1 cut(s) 140
MseI TTAA 1 cut(s) 370
MslI CAYNNNNRTG 2 cut(s) 686, 1022
Msp20I TGGCCA 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 133
MspR9I CCNGG 1 cut(s) 916
MunI CAATTG 2 cut(s) 247, 388
MvaI CCWGG 1 cut(s) 916
MwoI GCNNNNNNNGC 1 cut(s) 1322
NdeI CATATG 1 cut(s) 1211
NdeII GATC 5 cut(s) 234, 709, 1044, 1185, 1206
NlaIV GGNNCC 3 cut(s) 70, 258, 797
NmuCI GTSAC 6 cut(s) 91, 151, 451, 589, 717, 888
NspI RCATGY 2 cut(s) 282, 289
OliI CACNNNNGTG 1 cut(s) 1022
PaeI GCATGC 1 cut(s) 282
PagI TCATGA 2 cut(s) 597, 684
PfeI GAWTC 4 cut(s) 298, 550, 628, 978
PflFI GACNNNGTC 1 cut(s) 6
PkrI GCNGC 2 cut(s) 804, 1242
PleI GAGTC 1 cut(s) 504
PpsI GAGTC 1 cut(s) 504
Psp1406I AACGTT 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 914
PspGI CCWGG 1 cut(s) 914
PspN4I GGNNCC 3 cut(s) 70, 258, 797
PspPI GGNCC 2 cut(s) 69, 1069
PstI CTGCAG 2 cut(s) 512, 804
PstNI CAGNNNCTG 1 cut(s) 1180
PsuI RGATCY 1 cut(s) 234
PsyI GACNNNGTC 1 cut(s) 6
PvuII CAGCTG 1 cut(s) 133
RsaI GTAC 2 cut(s) 473, 1091
RsaNI GTAC 2 cut(s) 472, 1090
RseI CAYNNNNRTG 2 cut(s) 686, 1022
SaqAI TTAA 1 cut(s) 370
SatI GCNGC 2 cut(s) 803, 1241
Sau3AI GATC 5 cut(s) 234, 709, 1044, 1185, 1206
Sau96I GGNCC 2 cut(s) 69, 1069
SchI GAGTC 1 cut(s) 505
ScrFI CCNGG 1 cut(s) 916
SfaNI GCATC 2 cut(s) 167, 690
SfcI CTRYAG 2 cut(s) 508, 800
SinI GGWCC 1 cut(s) 1069
SmiMI CAYNNNNRTG 2 cut(s) 686, 1022
SmlI CTYRAG 2 cut(s) 341, 1189
SmoI CTYRAG 2 cut(s) 341, 1189
SphI GCATGC 1 cut(s) 282
SspMI CTAG 1 cut(s) 1010
StyD4I CCNGG 1 cut(s) 914
StyI CCWWGG 1 cut(s) 466
TaaI ACNGT 5 cut(s) 117, 337, 451, 837, 1176
TaiI ACGT 2 cut(s) 149, 596
TaqI TCGA 1 cut(s) 1171
TatI WGTACW 1 cut(s) 1089
TfiI GAWTC 4 cut(s) 298, 550, 628, 978
Tru1I TTAA 1 cut(s) 370
Tru9I TTAA 1 cut(s) 370
TscAI CASTG 7 cut(s) 188, 456, 726, 813, 842, 974, 1305
TseFI GTSAC 6 cut(s) 91, 151, 451, 589, 717, 888
TseI GCWGC 2 cut(s) 802, 1240
Tsp45I GTSAC 6 cut(s) 91, 151, 451, 589, 717, 888
TspDTI ATGAA 6 cut(s) 367, 458, 581, 586, 804, 1097
TspRI CASTG 7 cut(s) 188, 456, 726, 813, 842, 974, 1305
Tth111I GACNNNGTC 1 cut(s) 6
VpaK11BI GGWCC 1 cut(s) 1069
XapI RAATTY 4 cut(s) 531, 604, 1158, 1308
XceI RCATGY 2 cut(s) 282, 289
XmiI GTMKAC 1 cut(s) 124
XspI CTAG 1 cut(s) 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.