FvH4_2g20270

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
17037662 .. 17041154
3493 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g20270.t3

Sequence Viewer

Length: 1542 bp
ATGGTGAATTCTTGCAGGATTTCAGCACCAATGCTTGAGATGGCAAAATACATGGACCTTTGGCTAGCTACTTCAGCTGCCGGGTTTGAGATAACTCCTTTTTTACTTGGAGTGACAAGTAGCAACCTGATCTGGGGTCCATGGGAGATAGCATGCAGAGATTACCCTCATCCACGACATCTTTGTGCCAAATTCCCTTTCACTTCTACTCCACATGAGAAGCACTGTAACCTGTGTCACTGTTATGTCTGCGACTCTTTGGCACCCTGTGTACATTGGGGCATTGGTATCTCGCATATTGGCCATTGTCATGCCACTGAGAAAGTAGATATGTGGAAAGTAATGAGGAGAAATTTCAAGATGGGGAGAAGTGCTTCAATGCCAGCTATAAAAGTATCTTTGGCTGTGCCTCAACTTAGTCAAGTTCCACCCAGTTTGGCACCCAACTCTATACTGCAGACTCAGGTCTATAGGCCATCTACCATCCCTGCTATCTCCAGAGCCAGCCCCAATGTGCCAGCACCTACCTCTATACCACTGAAGCAGTTCCCGAGGTCAACTTTGATCCGTCCATGCCCCTCAACCCCCGTTGTAAATTCTACTGTCAGGAATCCAGTTAGAAGCAACCAACAAAGATTTCTTTCATCAAAGAATGGAGTCCAACCAGCTTCTGTCCAACCATCTTCAGCTTCTCAGCAGTTGCTTAGTAATGTTCAAAGGAGTAGCAGAGCTCAGAATATTGGTAATGAAGGCCTTCATTGTACCTCTTCACCAACAATGTTCAAAAGAGTAGGGCATGTTCGGGGTTCTTTGGCAAAGAACCAATCTACATATGGTTCAACATATAACAGCAATGTTAATCCATCGCAGTATGGTGTGGTAAATAACAACGGCTATGCCAATCCATCACAATATGGCAGAGTTCCCTCCTCTATGGTAGCATCAAATGACAGAATCTGCTACAGTTGGCAGGAGGTTCATAACAGCTTGAATCAGATGCCCTCCCTGCCCATGGGCAGTGGCATTGTTGGAAGTACATTGCCTCCCCAGCAGTACAGTCAACCTATTCTGCAGTCAGCTTATAGCCAAAATGTTCAGCAAGGGAGTCAAGTTCAAAATGATGGCCAAAATTTCTCGCAGTATGGGATTCAAAGTCAAAATGATAGCCAGAACGTCTCTCTGCAAGGGATAGGTGCAAGTGCCGCTGTGGACTTGGGGTTTTCAGATTGCAACTACAGTTGGATGAACAACACCAGTCAAAGCGTTCAGCAACCTCAACCTCCCATCGAAAATTCTCAAGTTCAAAGCACCGAGGATGTATATGGGTCAGATATCCAGTCCAATGGCTACCCTAATCTCAAGGGTTTTGAAAGTGACTTCGACTACTGGTTATCGGAGAATCAGCCAGTTCCACCAGTAACAAATGATTCTGTTTCTGTGCCATCTCAACTGGATCTCTTGTCTCCAGGGCCTCCTGTTGTAGACCCGGGGATGCTTTATTTTGATTTTGAAACCTCTTTCAACAGTCTCACAGAGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

514

Amino Acids

56.13

Weight (kDa)

7.55

Isoelectric Point (pI)

60.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 262, 439
AccI GTMKAC 1 cut(s) 1482
AciI CCGC 1 cut(s) 1203
AclWI GGATC 2 cut(s) 559, 1461
AcoI YGGCCR 2 cut(s) 301, 1123
AcsI RAATTY 6 cut(s) 7, 191, 352, 595, 1129, 1291
AcuI CTGAAG 3 cut(s) 57, 560, 669
AdeI CACNNNGTG 1 cut(s) 269
AfaI GTAC 4 cut(s) 273, 763, 1036, 1055
AfiI CCNNNNNNNGG 2 cut(s) 133, 1012
AjnI CCWGG 1 cut(s) 1465
AjuI GAANNNNNNNTTGG 4 cut(s) 182, 214, 621, 653
AleI CACNNNNGTG 1 cut(s) 1535
AluBI AGCT 8 cut(s) 68, 77, 386, 668, 689, 731, 987, 1079
AluI AGCT 8 cut(s) 68, 77, 386, 668, 689, 731, 987, 1079
Alw21I GWGCWC 1 cut(s) 733
Alw26I GTCTC 3 cut(s) 1180, 1467, 1532
AlwI GGATC 2 cut(s) 559, 1461
AlwNI CAGNNNCTG 2 cut(s) 671, 957
Ama87I CYCGRG 2 cut(s) 550, 1486
AoxI GGCC 5 cut(s) 301, 473, 751, 1123, 1469
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 6 cut(s) 7, 191, 352, 595, 1129, 1291
Asp700I GAANNNNTTC 3 cut(s) 373, 545, 753
AspS9I GGNCC 3 cut(s) 55, 137, 1469
AsuC2I CCSGG 3 cut(s) 82, 1487, 1488
AsuHPI GGTGA 2 cut(s) 16, 762
AsuNHI GCTAGC 1 cut(s) 64
AvaI CYCGRG 2 cut(s) 550, 1486
AvaII GGWCC 2 cut(s) 55, 137
BalI TGGCCA 2 cut(s) 303, 1125
BanI GGYRCC 2 cut(s) 262, 439
BanII GRGCYC 1 cut(s) 733
Bbv12I GWGCWC 1 cut(s) 733
BbvI GCAGC 1 cut(s) 64
BceAI ACGGC 1 cut(s) 907
BciT130I CCWGG 1 cut(s) 1467
BcnI CCSGG 3 cut(s) 82, 1487, 1488
BcoDI GTCTC 3 cut(s) 1180, 1467, 1532
BfaI CTAG 1 cut(s) 65
BfmI CTRYAG 5 cut(s) 455, 469, 961, 1070, 1234
BisI GCNGC 2 cut(s) 78, 1203
BlsI GCNGC 2 cut(s) 79, 1204
Bme1390I CCNGG 4 cut(s) 82, 1467, 1487, 1488
Bme18I GGWCC 2 cut(s) 55, 137
BmeT110I CYCGRG 2 cut(s) 550, 1486
BmgT120I GGNCC 3 cut(s) 55, 137, 1469
BmiI GGNNCC 3 cut(s) 138, 264, 441
BmrFI CCNGG 4 cut(s) 82, 1467, 1487, 1488
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 3 cut(s) 950, 987, 1482
BmtI GCTAGC 1 cut(s) 68
BmuI ACTGGG 1 cut(s) 426
BoxI GACNNNNGTC 1 cut(s) 464
BpmI CTGGAG 2 cut(s) 481, 1449
BpuEI CTTGAG 3 cut(s) 56, 1281, 1343
BpuMI CCSGG 3 cut(s) 82, 1487, 1488
BsaJI CCNNGG 7 cut(s) 140, 551, 1011, 1311, 1466, 1486, 1487
BsaXI ACNNNNNCTCC 4 cut(s) 193, 223, 1027, 1057
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 1012
Bse1I ACTGG 8 cut(s) 432, 614, 1254, 1336, 1391, 1406, 1415, 1455
Bse3DI GCAATG 2 cut(s) 859, 1037
BseBI CCWGG 1 cut(s) 1467
BseDI CCNNGG 7 cut(s) 140, 551, 1011, 1311, 1466, 1486, 1487
BseGI GGATG 5 cut(s) 169, 483, 1248, 1321, 1497
BseLI CCNNNNNNNGG 2 cut(s) 133, 1012
BseMI GCAATG 2 cut(s) 859, 1037
BseMII CTCAG 4 cut(s) 309, 476, 707, 746
BseNI ACTGG 8 cut(s) 432, 614, 1254, 1336, 1391, 1406, 1415, 1455
BseRI GAGGAG 2 cut(s) 361, 919
BseXI GCAGC 1 cut(s) 64
BseYI CCCAGC 1 cut(s) 1047
BshFI GGCC 5 cut(s) 303, 475, 753, 1125, 1471
BshNI GGYRCC 2 cut(s) 262, 439
BsiHKAI GWGCWC 1 cut(s) 733
BsiHKCI CYCGRG 2 cut(s) 550, 1486
BsiSI CCGG 2 cut(s) 81, 1487
BslI CCNNNNNNNGG 2 cut(s) 133, 1012
BsmAI GTCTC 3 cut(s) 1180, 1467, 1532
BsmBI CGTCTC 1 cut(s) 1180
BsnI GGCC 5 cut(s) 303, 475, 753, 1125, 1471
BsoBI CYCGRG 2 cut(s) 550, 1486
Bsp1286I GDGCHC 1 cut(s) 733
Bsp1407I TGTACA 1 cut(s) 271
Bsp143I GATC 3 cut(s) 129, 564, 1453
Bsp19I CCATGG 2 cut(s) 140, 1011
BspACI CCGC 1 cut(s) 1203
BspANI GGCC 5 cut(s) 303, 475, 753, 1125, 1471
BspCNI CTCAG 4 cut(s) 310, 475, 706, 745
BspLI GGNNCC 3 cut(s) 138, 264, 441
BspMAI CTGCAG 2 cut(s) 459, 1074
BspOI GCTAGC 1 cut(s) 68
BspPI GGATC 2 cut(s) 559, 1461
BspT107I GGYRCC 2 cut(s) 262, 439
BsrDI GCAATG 2 cut(s) 859, 1037
BsrGI TGTACA 1 cut(s) 271
BsrI ACTGG 8 cut(s) 432, 614, 1254, 1336, 1391, 1406, 1415, 1455
BssECI CCNNGG 7 cut(s) 140, 551, 1011, 1311, 1466, 1486, 1487
BssMI GATC 3 cut(s) 129, 564, 1453
BssT1I CCWWGG 2 cut(s) 140, 1011
Bst2UI CCWGG 1 cut(s) 1467
Bst4CI ACNGT 7 cut(s) 227, 242, 604, 965, 1058, 1238, 1526
Bst6I CTCTTC 1 cut(s) 772
BstAUI TGTACA 1 cut(s) 271
BstC8I GCNNGC 5 cut(s) 66, 154, 384, 505, 519
BstDEI CTNAG 6 cut(s) 318, 416, 462, 693, 704, 732
BstDSI CCRYGG 2 cut(s) 140, 1011
BstF5I GGATG 5 cut(s) 169, 483, 1248, 1321, 1497
BstKTI GATC 3 cut(s) 132, 567, 1456
BstMAI GTCTC 3 cut(s) 1180, 1467, 1532
BstMBI GATC 3 cut(s) 129, 564, 1453
BstMWI GCNNNNNNNGC 4 cut(s) 74, 1006, 1048, 1202
BstNI CCWGG 1 cut(s) 1467
BstNSI RCATGY 2 cut(s) 156, 800
BstPAI GACNNNNGTC 1 cut(s) 464
BstSCI CCNGG 4 cut(s) 80, 1465, 1485, 1486
BstSFI CTRYAG 5 cut(s) 455, 469, 961, 1070, 1234
BstV1I GCAGC 1 cut(s) 64
BstX2I RGATCY 1 cut(s) 1453
BstXI CCANNNNNNTGG 1 cut(s) 1343
BstYI RGATCY 1 cut(s) 1453
BsuRI GGCC 5 cut(s) 303, 475, 753, 1125, 1471
BtgI CCRYGG 2 cut(s) 140, 1011
BtgZI GCGATG 1 cut(s) 849
BtsCI GGATG 5 cut(s) 169, 483, 1248, 1321, 1497
BtsI GCAGTG 1 cut(s) 1024
BtsIMutI CAGTG 5 cut(s) 223, 238, 315, 536, 1024
Cac8I GCNNGC 5 cut(s) 66, 154, 384, 505, 519
CaiI CAGNNNCTG 2 cut(s) 671, 957
Cfr13I GGNCC 3 cut(s) 55, 137, 1469
Cfr9I CCCGGG 1 cut(s) 1486
Csp6I GTAC 4 cut(s) 272, 762, 1035, 1054
CspCI CAANNNNNGTGG 2 cut(s) 417, 452
CviAII CATG 8 cut(s) 52, 141, 153, 215, 311, 573, 797, 1012
CviQI GTAC 4 cut(s) 272, 762, 1035, 1054
DdeI CTNAG 6 cut(s) 318, 416, 462, 693, 704, 732
DpnI GATC 3 cut(s) 131, 566, 1455
DpnII GATC 3 cut(s) 129, 564, 1453
DraIII CACNNNGTG 1 cut(s) 269
EaeI YGGCCR 2 cut(s) 301, 1123
Eam1104I CTCTTC 1 cut(s) 772
EarI CTCTTC 1 cut(s) 772
Ecl136II GAGCTC 1 cut(s) 731
Eco130I CCWWGG 2 cut(s) 140, 1011
Eco147I AGGCCT 1 cut(s) 753
Eco24I GRGCYC 1 cut(s) 733
Eco32I GATATC 1 cut(s) 1333
Eco47I GGWCC 2 cut(s) 55, 137
Eco53kI GAGCTC 1 cut(s) 731
Eco57I CTGAAG 3 cut(s) 57, 560, 669
Eco88I CYCGRG 2 cut(s) 550, 1486
EcoICRI GAGCTC 1 cut(s) 731
EcoO109I RGGNCCY 1 cut(s) 1469
EcoRI GAATTC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 1465
EcoRV GATATC 1 cut(s) 1333
EcoT14I CCWWGG 2 cut(s) 140, 1011
EcoT38I GRGCYC 1 cut(s) 733
ErhI CCWWGG 2 cut(s) 140, 1011
Esp3I CGTCTC 1 cut(s) 1180
FaeI CATG 8 cut(s) 55, 144, 156, 218, 314, 576, 800, 1015
FatI CATG 8 cut(s) 51, 140, 152, 214, 310, 572, 796, 1011
FauNDI CATATG 1 cut(s) 832
FblI GTMKAC 1 cut(s) 1482
Fnu4HI GCNGC 2 cut(s) 78, 1203
FokI GGATG 5 cut(s) 156, 470, 1255, 1328, 1504
FriOI GRGCYC 1 cut(s) 733
Fsp4HI GCNGC 2 cut(s) 78, 1203
FspBI CTAG 1 cut(s) 65
GluI GCNGC 2 cut(s) 78, 1203
GsaI CCCAGC 1 cut(s) 1051
GsuI CTGGAG 2 cut(s) 481, 1449
HaeIII GGCC 5 cut(s) 303, 475, 753, 1125, 1471
HapII CCGG 2 cut(s) 81, 1487
Hin1II CATG 8 cut(s) 55, 144, 156, 218, 314, 576, 800, 1015
HincII GTYRAC 2 cut(s) 558, 1061
HindII GTYRAC 2 cut(s) 558, 1061
HpaII CCGG 2 cut(s) 81, 1487
HphI GGTGA 2 cut(s) 16, 762
Hpy166II GTNNAC 5 cut(s) 272, 558, 1061, 1210, 1483
Hpy188I TCNGA 5 cut(s) 735, 996, 1225, 1330, 1396
Hpy188III TCNNGA 4 cut(s) 358, 498, 550, 607
Hpy8I GTNNAC 5 cut(s) 272, 558, 1061, 1210, 1483
HpyAV CCTTC 2 cut(s) 743, 764
HpyCH4III ACNGT 7 cut(s) 227, 242, 604, 965, 1058, 1238, 1526
HpyCH4IV ACGT 1 cut(s) 1173
HpyCH4V TGCA 7 cut(s) 15, 156, 457, 1072, 1183, 1196, 1230
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 1006, 1048, 1202
HpyF3I CTNAG 6 cut(s) 318, 416, 462, 693, 704, 732
HpySE526I ACGT 1 cut(s) 1173
Hsp92II CATG 8 cut(s) 55, 144, 156, 218, 314, 576, 800, 1015
Kzo9I GATC 3 cut(s) 129, 564, 1453
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 3 cut(s) 950, 987, 1482
MaeI CTAG 1 cut(s) 65
MaeII ACGT 1 cut(s) 1173
MaeIII GTNAC 5 cut(s) 112, 227, 236, 1373, 1417
MalI GATC 3 cut(s) 131, 566, 1455
MboI GATC 3 cut(s) 129, 564, 1453
MboII GAAGA 2 cut(s) 675, 759
MflI RGATCY 1 cut(s) 1453
MhlI GDGCHC 1 cut(s) 733
MlsI TGGCCA 2 cut(s) 303, 1125
MluCI AATT 6 cut(s) 7, 191, 352, 595, 1129, 1291
MluNI TGGCCA 2 cut(s) 303, 1125
MlyI GAGTC 4 cut(s) 248, 454, 666, 1114
MmeI TCCRAC 4 cut(s) 685, 700, 1009, 1220
Mox20I TGGCCA 2 cut(s) 303, 1125
MroXI GAANNNNTTC 3 cut(s) 373, 545, 753
MscI TGGCCA 2 cut(s) 303, 1125
MseI TTAA 1 cut(s) 858
MslI CAYNNNNRTG 4 cut(s) 183, 243, 309, 1535
Msp20I TGGCCA 2 cut(s) 303, 1125
MspA1I CMGCKG 2 cut(s) 77, 1205
MspI CCGG 2 cut(s) 81, 1487
MspR9I CCNGG 4 cut(s) 82, 1467, 1487, 1488
MvaI CCWGG 1 cut(s) 1467
MwoI GCNNNNNNNGC 4 cut(s) 74, 1006, 1048, 1202
NciI CCSGG 3 cut(s) 82, 1487, 1488
NcoI CCATGG 2 cut(s) 140, 1011
NdeI CATATG 1 cut(s) 832
NdeII GATC 3 cut(s) 129, 564, 1453
NheI GCTAGC 1 cut(s) 64
NlaIII CATG 8 cut(s) 55, 144, 156, 218, 314, 576, 800, 1015
NlaIV GGNNCC 3 cut(s) 138, 264, 441
NmuCI GTSAC 3 cut(s) 112, 236, 1373
NspI RCATGY 2 cut(s) 156, 800
OliI CACNNNNGTG 1 cut(s) 1535
PaeI GCATGC 1 cut(s) 156
PceI AGGCCT 1 cut(s) 753
PdmI GAANNNNTTC 3 cut(s) 373, 545, 753
PfeI GAWTC 6 cut(s) 610, 954, 991, 1147, 1399, 1427
PkrI GCNGC 2 cut(s) 79, 1204
PleI GAGTC 4 cut(s) 248, 454, 665, 1113
PpsI GAGTC 4 cut(s) 248, 454, 665, 1113
PshAI GACNNNNGTC 1 cut(s) 464
Psp124BI GAGCTC 1 cut(s) 733
Psp6I CCWGG 1 cut(s) 1465
PspFI CCCAGC 1 cut(s) 1047
PspGI CCWGG 1 cut(s) 1465
PspN4I GGNNCC 3 cut(s) 138, 264, 441
PspPI GGNCC 3 cut(s) 55, 137, 1469
PsrI GAACNNNNNNTAC 2 cut(s) 783, 815
PstI CTGCAG 2 cut(s) 459, 1074
PstNI CAGNNNCTG 2 cut(s) 671, 957
PsuI RGATCY 1 cut(s) 1453
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 4 cut(s) 273, 763, 1036, 1055
RsaNI GTAC 4 cut(s) 272, 762, 1035, 1054
RseI CAYNNNNRTG 4 cut(s) 183, 243, 309, 1535
SacI GAGCTC 1 cut(s) 733
SaqAI TTAA 1 cut(s) 858
SatI GCNGC 2 cut(s) 78, 1203
Sau3AI GATC 3 cut(s) 129, 564, 1453
Sau96I GGNCC 3 cut(s) 55, 137, 1469
SchI GAGTC 4 cut(s) 248, 454, 666, 1114
ScrFI CCNGG 4 cut(s) 82, 1467, 1487, 1488
SduI GDGCHC 1 cut(s) 733
SfaNI GCATC 3 cut(s) 950, 987, 1482
SfcI CTRYAG 5 cut(s) 455, 469, 961, 1070, 1234
SinI GGWCC 2 cut(s) 55, 137
SmaI CCCGGG 1 cut(s) 1488
SmiMI CAYNNNNRTG 4 cut(s) 183, 243, 309, 1535
SmlI CTYRAG 3 cut(s) 35, 1296, 1358
SmoI CTYRAG 3 cut(s) 35, 1296, 1358
SphI GCATGC 1 cut(s) 156
Sse9I AATT 6 cut(s) 7, 191, 352, 595, 1129, 1291
SseBI AGGCCT 1 cut(s) 753
SsiI CCGC 1 cut(s) 1203
SspI AATATT 1 cut(s) 739
SspMI CTAG 1 cut(s) 65
SstI GAGCTC 1 cut(s) 733
StuI AGGCCT 1 cut(s) 753
StyD4I CCNGG 4 cut(s) 80, 1465, 1485, 1486
StyI CCWWGG 2 cut(s) 140, 1011
TaaI ACNGT 7 cut(s) 227, 242, 604, 965, 1058, 1238, 1526
TaiI ACGT 1 cut(s) 1176
TaqI TCGA 2 cut(s) 1287, 1380
TasI AATT 6 cut(s) 7, 191, 352, 595, 1129, 1291
TatI WGTACW 3 cut(s) 271, 1034, 1053
TauI GCSGC 1 cut(s) 1205
TfiI GAWTC 6 cut(s) 610, 954, 991, 1147, 1399, 1427
Tru1I TTAA 1 cut(s) 858
Tru9I TTAA 1 cut(s) 858
TscAI CASTG 5 cut(s) 230, 245, 322, 543, 1024
TseFI GTSAC 3 cut(s) 112, 236, 1373
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 3 cut(s) 112, 236, 1373
TspDTI ATGAA 5 cut(s) 633, 746, 762, 968, 1259
TspGWI ACGGA 1 cut(s) 557
TspMI CCCGGG 1 cut(s) 1486
TspRI CASTG 5 cut(s) 230, 245, 322, 543, 1024
VpaK11BI GGWCC 2 cut(s) 55, 137
XapI RAATTY 6 cut(s) 7, 191, 352, 595, 1129, 1291
XceI RCATGY 2 cut(s) 156, 800
XcmI CCANNNNNNNNNTGG 1 cut(s) 830
XmaI CCCGGG 1 cut(s) 1486
XmiI GTMKAC 1 cut(s) 1482
XmnI GAANNNNTTC 3 cut(s) 373, 545, 753
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.