Rh6DG285800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0008119
Physical Location & Seq
Reverse (-)
48039410 .. 48040654
1245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG285800.1

Sequence Viewer

Length: 1245 bp
ATGTGGAAAGTACTGAGGAGAAATTTCAAGATGGGGAGAAGTGCTTCCATGCCAGTTATAAAAGTATCTTTGGCTCTGCCTCAACTTAATCAAGTTCCACCTCTTGATATTATTAGATTGGCACCCAACTCTATTCCACAGACTCAGGTCTGTAGGCCAACTACGACCCATGCTGTCTCCTCCACCAGCCCTACTTTGCCAGCACCTACCTCTATACCACTGAATCAGGTCCCGAGGTCAACTTTGATCCGTGCTCCCCCCTCAACCACCCTTATCAATTCTACTGTCAGAAATCAAGGTAGAAGCCACCAACCAAGATTTCTTTCATCCAAGAATGGAGTCCAACCAGCTTCTGTCCAACCATCTTCAGCTTCTCAGCAGTTGCATAGTAATGCTGTAAGGAGTAGCAGAGCTCAGAATATTGGTAATGGAGGCCTTCACTCTACCTCTTCACCGACAATGTTTAAAAGAGCAGGGCCTGTTCGGATTTCTTTGGGAAGGAACCGTTCTGCATATGGTTCATCATATAACAGCAATCATGTTAATCCATCACAGTGTGGTTCGTTAAATAACAGCGGCTGTGCCAATCCATCACAATATGGCAGAATTCCCTCCCCCATGGCAGCATCACATGACGGAATTCGCTTCAGTTGGCAGGAGGTTCATAACAGCTTGAATCGGATCCCCTCCGTGCCCATGGGCAGTGGTATTGTTGGAAGTGCATTGCCTCCCCAGCAGCCCCAAACATACAGTCAACCTTTTGCTCAGTCAGCATATAGCCAAAATGTTCAGCAAGGGAGTCAAATTCAAAATGATGCCCAAAATATCTATCAATATGGGATTGAAAGTCAAAATGCAAGCCAGAACGTCTCTCTGCAAGGCATAGGTCCCAGTGCTGTGGACTTAGGGTTTTCAGATTGCAACTACAGTTGGACGAACAACACCAGTCAAAGCATTCAGCAACCTCAACCTCCCATTGGAAATTCTCAAGTTCAAAGCACCGAGGCTATATATGGGCCATCTCCAGTCAAGGAACCTGATTTCCAGTCCAACGGATACCCTAATTTCCAGGGGTTGGAAAGTGATTTCGAGAACTGGCTACTGGACAATCAGCCAACTCCACCAGTAACAAATGATTATGTGCCTTCTCAACTGGATCTCTTGTCTCCAGGGCCTGCTCTTGCTGACGCGGGGATGCTTCTGTTTGATTTTGAAACCTCTCTCAACAGTCTCACACAGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CSD

Protein Analysis

414

Amino Acids

44.59

Weight (kDa)

9.23

Isoelectric Point (pI)

57.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 59
AccB1I GGYRCC 1 cut(s) 121
AccB7I CCANNNNNTGG 1 cut(s) 1075
AccII CGCG 1 cut(s) 1190
AciI CCGC 2 cut(s) 576, 1190
AclWI GGATC 4 cut(s) 241, 676, 689, 1164
AcsI RAATTY 5 cut(s) 22, 606, 639, 804, 982
AcuI CTGAAG 2 cut(s) 351, 631
AdeI CACNNNGTG 1 cut(s) 557
AfaI GTAC 1 cut(s) 12
AfiI CCNNNNNNNGG 2 cut(s) 977, 1075
AgsI TTSAA 6 cut(s) 28, 676, 809, 845, 995, 1214
AjnI CCWGG 2 cut(s) 1068, 1168
AjuI GAANNNNNNNTTGG 4 cut(s) 303, 307, 335, 339
AleI CACNNNNGTG 1 cut(s) 1238
AloI GAACNNNNNNTCC 2 cut(s) 1026, 1058
AluBI AGCT 4 cut(s) 350, 371, 413, 672
AluI AGCT 4 cut(s) 350, 371, 413, 672
Alw21I GWGCWC 2 cut(s) 256, 415
Alw26I GTCTC 4 cut(s) 181, 874, 1170, 1235
AlwI GGATC 4 cut(s) 241, 676, 689, 1164
AlwNI CAGNNNCTG 4 cut(s) 353, 479, 579, 1175
Ama87I CYCGRG 1 cut(s) 232
AoxI GGCC 5 cut(s) 155, 433, 476, 1016, 1172
ApeKI GCWGC 2 cut(s) 623, 736
ApoI RAATTY 5 cut(s) 22, 606, 639, 804, 982
ArsI GACNNNNNNTTYG 2 cut(s) 736, 768
Asp700I GAANNNNTTC 1 cut(s) 43
AspS9I GGNCC 5 cut(s) 229, 476, 887, 1016, 1172
AsuHPI GGTGA 1 cut(s) 444
AvaI CYCGRG 1 cut(s) 232
AvaII GGWCC 2 cut(s) 229, 887
BaeGI GKGCMC 1 cut(s) 696
BamHI GGATCC 1 cut(s) 681
BanI GGYRCC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 415
Bbv12I GWGCWC 2 cut(s) 256, 415
BbvI GCAGC 2 cut(s) 635, 748
BccI CCATC 5 cut(s) 25, 370, 556, 598, 1027
BciT130I CCWGG 2 cut(s) 1070, 1170
BciVI GTATCC 1 cut(s) 1049
BcoDI GTCTC 4 cut(s) 181, 874, 1170, 1235
BfmI CTRYAG 2 cut(s) 151, 925
BfuI GTATCC 1 cut(s) 1049
BisI GCNGC 3 cut(s) 577, 624, 737
BlsI GCNGC 3 cut(s) 578, 625, 738
BmcAI AGTACT 1 cut(s) 12
Bme1390I CCNGG 2 cut(s) 1070, 1170
Bme18I GGWCC 2 cut(s) 229, 887
BmeT110I CYCGRG 1 cut(s) 232
BmgT120I GGNCC 5 cut(s) 229, 476, 887, 1016, 1172
BmiI GGNNCC 6 cut(s) 123, 231, 503, 683, 889, 1035
BmrFI CCNGG 2 cut(s) 1070, 1170
BmrI ACTGGG 1 cut(s) 885
BmsI GCATC 3 cut(s) 635, 805, 1185
BmuI ACTGGG 1 cut(s) 885
BoxI GACNNNNGTC 1 cut(s) 146
BpmI CTGGAG 2 cut(s) 1008, 1152
BpuEI CTTGAG 1 cut(s) 972
BsaJI CCNNGG 6 cut(s) 233, 618, 696, 1002, 1069, 1169
Bsc4I CCNNNNNNNGG 2 cut(s) 977, 1075
Bse1I ACTGG 9 cut(s) 53, 891, 945, 1025, 1045, 1100, 1107, 1124, 1158
Bse3DI GCAATG 1 cut(s) 722
BseBI CCWGG 2 cut(s) 1070, 1170
BseDI CCNNGG 6 cut(s) 233, 618, 696, 1002, 1069, 1169
BseGI GGATG 2 cut(s) 326, 1200
BseLI CCNNNNNNNGG 2 cut(s) 977, 1075
BseMI GCAATG 1 cut(s) 722
BseMII CTCAG 5 cut(s) 5, 158, 389, 428, 779
BseNI ACTGG 9 cut(s) 53, 891, 945, 1025, 1045, 1100, 1107, 1124, 1158
BseRI GAGGAG 2 cut(s) 31, 169
BseSI GKGCMC 1 cut(s) 696
BseXI GCAGC 2 cut(s) 635, 748
BseYI CCCAGC 1 cut(s) 732
Bsh1236I CGCG 1 cut(s) 1190
BshFI GGCC 5 cut(s) 157, 435, 478, 1018, 1174
BshNI GGYRCC 1 cut(s) 121
BsiHKAI GWGCWC 2 cut(s) 256, 415
BsiHKCI CYCGRG 1 cut(s) 232
BslFI GGGAC 2 cut(s) 215, 873
BslI CCNNNNNNNGG 2 cut(s) 977, 1075
BsmAI GTCTC 4 cut(s) 181, 874, 1170, 1235
BsmBI CGTCTC 1 cut(s) 874
BsmFI GGGAC 2 cut(s) 215, 873
BsmI GAATGC 1 cut(s) 954
BsnI GGCC 5 cut(s) 157, 435, 478, 1018, 1174
BsoBI CYCGRG 1 cut(s) 232
Bsp1286I GDGCHC 3 cut(s) 256, 415, 696
Bsp143I GATC 3 cut(s) 246, 681, 1156
Bsp19I CCATGG 2 cut(s) 618, 696
BspACI CCGC 2 cut(s) 576, 1190
BspANI GGCC 5 cut(s) 157, 435, 478, 1018, 1174
BspCNI CTCAG 5 cut(s) 6, 157, 388, 427, 778
BspFNI CGCG 1 cut(s) 1190
BspLI GGNNCC 6 cut(s) 123, 231, 503, 683, 889, 1035
BspPI GGATC 4 cut(s) 241, 676, 689, 1164
BspT107I GGYRCC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 722
BsrI ACTGG 9 cut(s) 53, 891, 945, 1025, 1045, 1100, 1107, 1124, 1158
BssECI CCNNGG 6 cut(s) 233, 618, 696, 1002, 1069, 1169
BssMI GATC 3 cut(s) 246, 681, 1156
BssT1I CCWWGG 2 cut(s) 618, 696
Bst2UI CCWGG 2 cut(s) 1070, 1170
Bst4CI ACNGT 6 cut(s) 286, 506, 555, 752, 929, 1229
Bst6I CTCTTC 1 cut(s) 454
BstC8I GCNNGC 3 cut(s) 201, 859, 1176
BstDEI CTNAG 6 cut(s) 14, 144, 375, 414, 765, 904
BstDSI CCRYGG 2 cut(s) 618, 696
BstF5I GGATG 2 cut(s) 326, 1200
BstFNI CGCG 1 cut(s) 1190
BstKTI GATC 3 cut(s) 249, 684, 1159
BstMAI GTCTC 4 cut(s) 181, 874, 1170, 1235
BstMBI GATC 3 cut(s) 246, 681, 1156
BstMWI GCNNNNNNNGC 2 cut(s) 733, 770
BstNI CCWGG 2 cut(s) 1070, 1170
BstPAI GACNNNNGTC 1 cut(s) 146
BstSCI CCNGG 2 cut(s) 1068, 1168
BstSFI CTRYAG 2 cut(s) 151, 925
BstSLI GKGCMC 1 cut(s) 696
BstUI CGCG 1 cut(s) 1190
BstV1I GCAGC 2 cut(s) 635, 748
BstX2I RGATCY 2 cut(s) 681, 1156
BstXI CCANNNNNNTGG 1 cut(s) 898
BstYI RGATCY 2 cut(s) 681, 1156
BsuI GTATCC 1 cut(s) 1049
BsuRI GGCC 5 cut(s) 157, 435, 478, 1018, 1174
BtgI CCRYGG 2 cut(s) 618, 696
BtsCI GGATG 2 cut(s) 326, 1200
BtsI GCAGTG 1 cut(s) 709
BtsIMutI CAGTG 4 cut(s) 218, 560, 709, 898
Cac8I GCNNGC 3 cut(s) 201, 859, 1176
CaiI CAGNNNCTG 4 cut(s) 353, 479, 579, 1175
Cfr13I GGNCC 5 cut(s) 229, 476, 887, 1016, 1172
CseI GACGC 1 cut(s) 1196
Csp6I GTAC 1 cut(s) 11
CviAII CATG 6 cut(s) 49, 170, 539, 619, 632, 697
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 6 cut(s) 14, 144, 375, 414, 765, 904
DpnI GATC 3 cut(s) 248, 683, 1158
DpnII GATC 3 cut(s) 246, 681, 1156
DraI TTTAAA 1 cut(s) 466
DraIII CACNNNGTG 1 cut(s) 557
Eam1104I CTCTTC 1 cut(s) 454
EarI CTCTTC 1 cut(s) 454
Ecl136II GAGCTC 1 cut(s) 413
Eco130I CCWWGG 2 cut(s) 618, 696
Eco147I AGGCCT 1 cut(s) 435
Eco24I GRGCYC 1 cut(s) 415
Eco47I GGWCC 2 cut(s) 229, 887
Eco53kI GAGCTC 1 cut(s) 413
Eco57I CTGAAG 2 cut(s) 351, 631
Eco88I CYCGRG 1 cut(s) 232
EcoICRI GAGCTC 1 cut(s) 413
EcoO109I RGGNCCY 4 cut(s) 229, 476, 887, 1172
EcoRI GAATTC 2 cut(s) 606, 639
EcoRII CCWGG 2 cut(s) 1068, 1168
EcoT14I CCWWGG 2 cut(s) 618, 696
EcoT38I GRGCYC 1 cut(s) 415
ErhI CCWWGG 2 cut(s) 618, 696
Esp3I CGTCTC 1 cut(s) 874
FaeI CATG 6 cut(s) 52, 173, 542, 622, 635, 700
FaqI GGGAC 2 cut(s) 215, 873
FatI CATG 6 cut(s) 48, 169, 538, 618, 631, 696
FauI CCCGC 1 cut(s) 1183
FauNDI CATATG 1 cut(s) 514
Fnu4HI GCNGC 3 cut(s) 577, 624, 737
FokI GGATG 2 cut(s) 313, 1207
FriOI GRGCYC 1 cut(s) 415
Fsp4HI GCNGC 3 cut(s) 577, 624, 737
GluI GCNGC 3 cut(s) 577, 624, 737
GsaI CCCAGC 1 cut(s) 736
GsuI CTGGAG 2 cut(s) 1008, 1152
HaeIII GGCC 5 cut(s) 157, 435, 478, 1018, 1174
HgaI GACGC 1 cut(s) 1196
Hin1II CATG 6 cut(s) 52, 173, 542, 622, 635, 700
HincII GTYRAC 2 cut(s) 240, 755
HindII GTYRAC 2 cut(s) 240, 755
HinfI GANTC 5 cut(s) 142, 223, 339, 676, 799
HphI GGTGA 1 cut(s) 444
Hpy166II GTNNAC 3 cut(s) 240, 755, 901
Hpy188I TCNGA 5 cut(s) 290, 417, 486, 681, 916
Hpy188III TCNNGA 4 cut(s) 28, 104, 232, 1090
Hpy8I GTNNAC 3 cut(s) 240, 755, 901
HpyAV CCTTC 3 cut(s) 446, 492, 1155
HpyCH4III ACNGT 6 cut(s) 286, 506, 555, 752, 929, 1229
HpyCH4IV ACGT 1 cut(s) 867
HpyCH4V TGCA 6 cut(s) 385, 512, 722, 857, 877, 921
HpyF10VI GCNNNNNNNGC 2 cut(s) 733, 770
HpyF3I CTNAG 6 cut(s) 14, 144, 375, 414, 765, 904
HpySE526I ACGT 1 cut(s) 867
Hsp92II CATG 6 cut(s) 52, 173, 542, 622, 635, 700
Kzo9I GATC 3 cut(s) 246, 681, 1156
LmnI GCTCC 1 cut(s) 259
Lsp1109I GCAGC 2 cut(s) 635, 748
LweI GCATC 3 cut(s) 635, 805, 1185
MaeII ACGT 1 cut(s) 867
MaeIII GTNAC 1 cut(s) 1126
MalI GATC 3 cut(s) 248, 683, 1158
MboI GATC 3 cut(s) 246, 681, 1156
MboII GAAGA 2 cut(s) 357, 441
MflI RGATCY 2 cut(s) 681, 1156
MhlI GDGCHC 3 cut(s) 256, 415, 696
MluCI AATT 7 cut(s) 22, 277, 606, 639, 804, 982, 1063
MlyI GAGTC 3 cut(s) 136, 348, 808
MmeI TCCRAC 6 cut(s) 367, 382, 694, 911, 1056, 1074
MroXI GAANNNNTTC 1 cut(s) 43
MseI TTAA 4 cut(s) 87, 465, 543, 566
MslI CAYNNNNRTG 3 cut(s) 390, 553, 1238
MspA1I CMGCKG 1 cut(s) 576
MspR9I CCNGG 2 cut(s) 1070, 1170
Mva1269I GAATGC 1 cut(s) 954
MvaI CCWGG 2 cut(s) 1070, 1170
MvnI CGCG 1 cut(s) 1190
MwoI GCNNNNNNNGC 2 cut(s) 733, 770
NcoI CCATGG 2 cut(s) 618, 696
NdeI CATATG 1 cut(s) 514
NdeII GATC 3 cut(s) 246, 681, 1156
NlaIII CATG 6 cut(s) 52, 173, 542, 622, 635, 700
NlaIV GGNNCC 6 cut(s) 123, 231, 503, 683, 889, 1035
OliI CACNNNNGTG 1 cut(s) 1238
PceI AGGCCT 1 cut(s) 435
PctI GAATGC 1 cut(s) 954
PdmI GAANNNNTTC 1 cut(s) 43
PfeI GAWTC 2 cut(s) 223, 676
PflMI CCANNNNNTGG 1 cut(s) 1075
PkrI GCNGC 3 cut(s) 578, 625, 738
PleI GAGTC 3 cut(s) 136, 347, 807
PpsI GAGTC 3 cut(s) 136, 347, 807
PpuMI RGGWCCY 2 cut(s) 229, 887
PshAI GACNNNNGTC 1 cut(s) 146
PsiI TTATAA 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 415
Psp5II RGGWCCY 2 cut(s) 229, 887
Psp6I CCWGG 2 cut(s) 1068, 1168
PspFI CCCAGC 1 cut(s) 732
PspGI CCWGG 2 cut(s) 1068, 1168
PspN4I GGNNCC 6 cut(s) 123, 231, 503, 683, 889, 1035
PspPI GGNCC 5 cut(s) 229, 476, 887, 1016, 1172
PspPPI RGGWCCY 2 cut(s) 229, 887
PstNI CAGNNNCTG 4 cut(s) 353, 479, 579, 1175
PsuI RGATCY 2 cut(s) 681, 1156
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
RseI CAYNNNNRTG 3 cut(s) 390, 553, 1238
SacI GAGCTC 1 cut(s) 415
SaqAI TTAA 4 cut(s) 87, 465, 543, 566
SatI GCNGC 3 cut(s) 577, 624, 737
Sau3AI GATC 3 cut(s) 246, 681, 1156
Sau96I GGNCC 5 cut(s) 229, 476, 887, 1016, 1172
ScaI AGTACT 1 cut(s) 12
SchI GAGTC 3 cut(s) 136, 348, 808
ScrFI CCNGG 2 cut(s) 1070, 1170
SduI GDGCHC 3 cut(s) 256, 415, 696
SfaNI GCATC 3 cut(s) 635, 805, 1185
SfcI CTRYAG 2 cut(s) 151, 925
SinI GGWCC 2 cut(s) 229, 887
SmiMI CAYNNNNRTG 3 cut(s) 390, 553, 1238
SmlI CTYRAG 1 cut(s) 987
SmoI CTYRAG 1 cut(s) 987
Sse9I AATT 7 cut(s) 22, 277, 606, 639, 804, 982, 1063
SseBI AGGCCT 1 cut(s) 435
SsiI CCGC 2 cut(s) 576, 1190
SspI AATATT 1 cut(s) 421
SstI GAGCTC 1 cut(s) 415
StuI AGGCCT 1 cut(s) 435
StyD4I CCNGG 2 cut(s) 1068, 1168
StyI CCWWGG 2 cut(s) 618, 696
TaaI ACNGT 6 cut(s) 286, 506, 555, 752, 929, 1229
TaiI ACGT 1 cut(s) 870
TaqI TCGA 1 cut(s) 1089
TasI AATT 7 cut(s) 22, 277, 606, 639, 804, 982, 1063
TatI WGTACW 1 cut(s) 10
TauI GCSGC 1 cut(s) 579
TfiI GAWTC 2 cut(s) 223, 676
Tru1I TTAA 4 cut(s) 87, 465, 543, 566
Tru9I TTAA 4 cut(s) 87, 465, 543, 566
TscAI CASTG 4 cut(s) 225, 560, 709, 898
TseI GCWGC 2 cut(s) 623, 736
TspDTI ATGAA 3 cut(s) 315, 510, 653
TspGWI ACGGA 4 cut(s) 239, 651, 679, 1068
TspRI CASTG 4 cut(s) 225, 560, 709, 898
Van91I CCANNNNNTGG 1 cut(s) 1075
VpaK11BI GGWCC 2 cut(s) 229, 887
XapI RAATTY 5 cut(s) 22, 606, 639, 804, 982
XmnI GAANNNNTTC 1 cut(s) 43
ZrmI AGTACT 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.