Rorug06G0178700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008119
Physical Location & Seq
Reverse (-)
28223587 .. 28224535
949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0178700.1

Sequence Viewer

Length: 876 bp
ATGGAGGAGAGCAGAGGCAATCAACTTCCTGGCCAGAGGTTCTGCCCCATGGAAGATGAACTAGTTCTCTTCTACCTCAAGCCCATGTTGAGCGGACAGATCGTGCCCGGCAGAAACCGCGTGGTGTTCGACTGTGACCTCTACGGTCACCTAGAACCTTGGGAGATATGGGAGGCCTTCAAGACCAAAAGACCACACGACTTGAGGCTCAACAAGGACATTTACTTCTTCACCCAACACAAGAAGGAAGATGAGTTCCACAGCCAAGCGCGTCGTGTTGTTGGCTTGAAGAAAAGATATACTTACAAGAATGATGACTCGGTTCACAACGGCTGTTGGATCTTGTATGAGTTCTACCTTGATCAATCACTCAGAGACAATAAACAAAAGCTGGAAGACTATGTTCTATGTCTACTACGAAAGAATGGTGAACCCAAAACCAAGATCGAAAAGAAAAGAAAGCAACGTGAAGAGAAAGAGGTTCTTGAAAACAATTATGCATTTGATGATGGAGAAAAATCGAAAAGGGAGCAAGAAGAGTTGCTTGAGCCACAAGCGAAGCGGCAACGAACGGTGCCATCCATTGGTAATGCACCACTAACAATGCCATCAGAAGATGATGCTGCATTCGCAGCTGAACTAGAAGAGTCATTGGAATGCTTTGAAGATGATAATGCACCCTCAGAAGCTCGAGCAATTGGCTTTGAAGGTGGGGAAAATGGTGGACTCCAACAATTAGCAGCCGAGGTGCAATCAGGCCCTTCATTTGTAGACGATCATGGAATATTTAATCCGCTACCGGAGGAAGACTTTTCCCTTGGCGGAAATGTTAGAAGAAATGGGTATGGTGGACATGGAAGAACTAGTTCTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CSD

Protein Analysis

291

Amino Acids

33.62

Weight (kDa)

5.16

Isoelectric Point (pI)

62.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 10 - 85 4.8e-10 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 574
AccB7I CCANNNNNTGG 1 cut(s) 584
AccBSI CCGCTC 1 cut(s) 93
AccI GTMKAC 2 cut(s) 412, 771
AccII CGCG 2 cut(s) 120, 271
AciI CCGC 5 cut(s) 93, 118, 562, 794, 822
AclWI GGATC 1 cut(s) 347
AcoI YGGCCR 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 584
AgsI TTSAA 5 cut(s) 181, 289, 488, 665, 707
AhlI ACTAGT 2 cut(s) 61, 863
AjnI CCWGG 1 cut(s) 28
AloI GAACNNNNNNTCC 2 cut(s) 239, 271
AluBI AGCT 3 cut(s) 391, 635, 689
AluI AGCT 3 cut(s) 391, 635, 689
Alw26I GTCTC 1 cut(s) 369
AlwI GGATC 1 cut(s) 347
Ama87I CYCGRG 1 cut(s) 690
AoxI GGCC 3 cut(s) 31, 174, 757
ApeKI GCWGC 3 cut(s) 623, 632, 740
Asp700I GAANNNNTTC 2 cut(s) 63, 865
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 1 cut(s) 758
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 3 cut(s) 140, 223, 440
AvaI CYCGRG 1 cut(s) 690
BaeGI GKGCMC 1 cut(s) 108
BalI TGGCCA 1 cut(s) 33
BanI GGYRCC 1 cut(s) 574
BbsI GAAGAC 2 cut(s) 402, 813
BbvI GCAGC 3 cut(s) 610, 644, 752
BccI CCATC 3 cut(s) 503, 586, 616
BceAI ACGGC 1 cut(s) 346
BciT130I CCWGG 1 cut(s) 30
BclI TGATCA 1 cut(s) 361
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 369
BcuI ACTAGT 2 cut(s) 61, 863
BfaI CTAG 4 cut(s) 62, 152, 641, 864
BisI GCNGC 4 cut(s) 563, 624, 633, 741
BlsI GCNGC 4 cut(s) 564, 625, 634, 742
Bme1390I CCNGG 2 cut(s) 30, 108
BmeT110I CYCGRG 1 cut(s) 690
BmgT120I GGNCC 1 cut(s) 758
BmiI GGNNCC 1 cut(s) 576
BmrFI CCNGG 2 cut(s) 30, 108
BmsI GCATC 1 cut(s) 610
BpiI GAAGAC 2 cut(s) 402, 813
BpuEI CTTGAG 3 cut(s) 62, 223, 566
BpuMI CCSGG 1 cut(s) 108
BsaJI CCNNGG 4 cut(s) 48, 158, 744, 817
BsaWI WCCGGW 1 cut(s) 799
Bsc4I CCNNNNNNNGG 1 cut(s) 584
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 4 cut(s) 48, 158, 744, 817
BseGI GGATG 1 cut(s) 578
BseLI CCNNNNNNNGG 1 cut(s) 584
BseMII CTCAG 2 cut(s) 385, 696
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 108
BseXI GCAGC 3 cut(s) 610, 644, 752
Bsh1236I CGCG 2 cut(s) 120, 271
BshFI GGCC 3 cut(s) 33, 176, 759
BshNI GGYRCC 1 cut(s) 574
BsiHKCI CYCGRG 1 cut(s) 690
BsiSI CCGG 2 cut(s) 108, 800
BslI CCNNNNNNNGG 1 cut(s) 584
BsmAI GTCTC 1 cut(s) 369
BsmI GAATGC 2 cut(s) 626, 662
BsnI GGCC 3 cut(s) 33, 176, 759
BsoBI CYCGRG 1 cut(s) 690
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 5 cut(s) 99, 339, 361, 444, 775
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 5 cut(s) 93, 118, 562, 794, 822
BspANI GGCC 3 cut(s) 33, 176, 759
BspCNI CTCAG 2 cut(s) 384, 695
BspFNI CGCG 2 cut(s) 120, 271
BspLI GGNNCC 1 cut(s) 576
BspPI GGATC 1 cut(s) 347
BspT107I GGYRCC 1 cut(s) 574
BsrBI CCGCTC 1 cut(s) 93
BssECI CCNNGG 4 cut(s) 48, 158, 744, 817
BssMI GATC 5 cut(s) 99, 339, 361, 444, 775
BssT1I CCWWGG 3 cut(s) 48, 158, 817
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 3 cut(s) 134, 146, 574
Bst6I CTCTTC 4 cut(s) 74, 465, 531, 639
BstDEI CTNAG 2 cut(s) 371, 682
BstDSI CCRYGG 1 cut(s) 48
BstEII GGTNACC 1 cut(s) 146
BstF5I GGATG 1 cut(s) 578
BstFNI CGCG 2 cut(s) 120, 271
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 5 cut(s) 102, 342, 364, 447, 778
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 5 cut(s) 99, 339, 361, 444, 775
BstMWI GCNNNNNNNGC 3 cut(s) 117, 629, 632
BstNI CCWGG 1 cut(s) 30
BstPI GGTNACC 1 cut(s) 146
BstSCI CCNGG 2 cut(s) 28, 106
BstSLI GKGCMC 1 cut(s) 108
BstUI CGCG 2 cut(s) 120, 271
BstV1I GCAGC 3 cut(s) 610, 644, 752
BstV2I GAAGAC 2 cut(s) 402, 813
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
BsuRI GGCC 3 cut(s) 33, 176, 759
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 1 cut(s) 578
CfoI GCGC 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 758
CseI GACGC 1 cut(s) 260
CspCI CAANNNNNGTGG 2 cut(s) 183, 218
CviAII CATG 4 cut(s) 49, 85, 779, 854
DdeI CTNAG 2 cut(s) 371, 682
DpnI GATC 5 cut(s) 101, 341, 363, 446, 777
DpnII GATC 5 cut(s) 99, 339, 361, 444, 775
EaeI YGGCCR 1 cut(s) 31
Eam1104I CTCTTC 4 cut(s) 74, 465, 531, 639
EarI CTCTTC 4 cut(s) 74, 465, 531, 639
EciI GGCGGA 1 cut(s) 837
Eco130I CCWWGG 3 cut(s) 48, 158, 817
Eco147I AGGCCT 1 cut(s) 176
Eco88I CYCGRG 1 cut(s) 690
Eco91I GGTNACC 1 cut(s) 146
EcoO109I RGGNCCY 1 cut(s) 758
EcoO65I GGTNACC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 28
EcoT14I CCWWGG 3 cut(s) 48, 158, 817
EcoT22I ATGCAT 1 cut(s) 502
ErhI CCWWGG 3 cut(s) 48, 158, 817
FaeI CATG 4 cut(s) 52, 88, 782, 857
FalI AAGNNNNNCTT 6 cut(s) 286, 318, 468, 500, 528, 560
FatI CATG 4 cut(s) 48, 84, 778, 853
FbaI TGATCA 1 cut(s) 361
FblI GTMKAC 2 cut(s) 412, 771
Fnu4HI GCNGC 4 cut(s) 563, 624, 633, 741
FokI GGATG 1 cut(s) 565
Fsp4HI GCNGC 4 cut(s) 563, 624, 633, 741
FspBI CTAG 4 cut(s) 62, 152, 641, 864
GlaI GCGC 1 cut(s) 270
GluI GCNGC 4 cut(s) 563, 624, 633, 741
HaeIII GGCC 3 cut(s) 33, 176, 759
HapII CCGG 2 cut(s) 108, 800
HgaI GACGC 1 cut(s) 260
HhaI GCGC 1 cut(s) 271
Hin1II CATG 4 cut(s) 52, 88, 782, 857
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HinfI GANTC 3 cut(s) 317, 647, 726
HpaII CCGG 2 cut(s) 108, 800
HphI GGTGA 3 cut(s) 140, 223, 440
Hpy166II GTNNAC 6 cut(s) 325, 413, 431, 725, 772, 851
Hpy188I TCNGA 3 cut(s) 374, 613, 685
Hpy188III TCNNGA 2 cut(s) 181, 485
Hpy8I GTNNAC 6 cut(s) 325, 413, 431, 725, 772, 851
Hpy99I CGWCG 1 cut(s) 276
HpyAV CCTTC 4 cut(s) 187, 238, 701, 771
HpyCH4III ACNGT 3 cut(s) 134, 146, 574
HpyCH4IV ACGT 1 cut(s) 466
HpyCH4V TGCA 5 cut(s) 500, 593, 626, 677, 751
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 629, 632
HpyF3I CTNAG 2 cut(s) 371, 682
HpySE526I ACGT 1 cut(s) 466
Hsp92II CATG 4 cut(s) 52, 88, 782, 857
HspAI GCGC 1 cut(s) 269
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 5 cut(s) 99, 339, 361, 444, 775
LmnI GCTCC 1 cut(s) 529
LpnPI CCDG 7 cut(s) 15, 42, 47, 121, 377, 741, 813
Lsp1109I GCAGC 3 cut(s) 610, 644, 752
LweI GCATC 1 cut(s) 610
MaeI CTAG 4 cut(s) 62, 152, 641, 864
MaeII ACGT 1 cut(s) 466
MaeIII GTNAC 2 cut(s) 134, 146
MalI GATC 5 cut(s) 101, 341, 363, 446, 777
MbiI CCGCTC 1 cut(s) 93
MboI GATC 5 cut(s) 99, 339, 361, 444, 775
MfeI CAATTG 1 cut(s) 696
MflI RGATCY 1 cut(s) 339
MhlI GDGCHC 1 cut(s) 108
MlsI TGGCCA 1 cut(s) 33
MluCI AATT 3 cut(s) 493, 696, 734
MluNI TGGCCA 1 cut(s) 33
MlyI GAGTC 3 cut(s) 311, 656, 720
MmeI TCCRAC 2 cut(s) 317, 754
Mox20I TGGCCA 1 cut(s) 33
Mph1103I ATGCAT 1 cut(s) 502
MroXI GAANNNNTTC 2 cut(s) 63, 865
MscI TGGCCA 1 cut(s) 33
MseI TTAA 2 cut(s) 789, 874
MslI CAYNNNNRTG 1 cut(s) 655
Msp20I TGGCCA 1 cut(s) 33
MspA1I CMGCKG 1 cut(s) 635
MspI CCGG 2 cut(s) 108, 800
MspR9I CCNGG 2 cut(s) 30, 108
MunI CAATTG 1 cut(s) 696
Mva1269I GAATGC 2 cut(s) 626, 662
MvaI CCWGG 1 cut(s) 30
MvnI CGCG 2 cut(s) 120, 271
MwoI GCNNNNNNNGC 3 cut(s) 117, 629, 632
NciI CCSGG 1 cut(s) 108
NcoI CCATGG 1 cut(s) 48
NdeII GATC 5 cut(s) 99, 339, 361, 444, 775
NlaIII CATG 4 cut(s) 52, 88, 782, 857
NlaIV GGNNCC 1 cut(s) 576
NmeAIII GCCGAG 1 cut(s) 769
NmuCI GTSAC 2 cut(s) 134, 146
NsiI ATGCAT 1 cut(s) 502
PaeR7I CTCGAG 1 cut(s) 690
PceI AGGCCT 1 cut(s) 176
PctI GAATGC 2 cut(s) 626, 662
PdmI GAANNNNTTC 2 cut(s) 63, 865
PflMI CCANNNNNTGG 1 cut(s) 584
PkrI GCNGC 4 cut(s) 564, 625, 634, 742
PleI GAGTC 3 cut(s) 311, 655, 720
PpsI GAGTC 3 cut(s) 311, 655, 720
Psp6I CCWGG 1 cut(s) 28
PspEI GGTNACC 1 cut(s) 146
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 576
PspPI GGNCC 1 cut(s) 758
PspXI VCTCGAGB 1 cut(s) 690
PsuI RGATCY 1 cut(s) 339
PvuII CAGCTG 1 cut(s) 635
RseI CAYNNNNRTG 1 cut(s) 655
SaqAI TTAA 2 cut(s) 789, 874
SatI GCNGC 4 cut(s) 563, 624, 633, 741
Sau3AI GATC 5 cut(s) 99, 339, 361, 444, 775
Sau96I GGNCC 1 cut(s) 758
SchI GAGTC 3 cut(s) 311, 656, 720
ScrFI CCNGG 2 cut(s) 30, 108
SduI GDGCHC 1 cut(s) 108
SfaNI GCATC 1 cut(s) 610
Sfr274I CTCGAG 1 cut(s) 690
SlaI CTCGAG 1 cut(s) 690
SmiMI CAYNNNNRTG 1 cut(s) 655
SmlI CTYRAG 4 cut(s) 77, 202, 545, 690
SmoI CTYRAG 4 cut(s) 77, 202, 545, 690
SpeI ACTAGT 2 cut(s) 61, 863
Sse9I AATT 3 cut(s) 493, 696, 734
SseBI AGGCCT 1 cut(s) 176
SsiI CCGC 5 cut(s) 93, 118, 562, 794, 822
SspI AATATT 1 cut(s) 786
SspMI CTAG 4 cut(s) 62, 152, 641, 864
StuI AGGCCT 1 cut(s) 176
StyD4I CCNGG 2 cut(s) 28, 106
StyI CCWWGG 3 cut(s) 48, 158, 817
TaaI ACNGT 3 cut(s) 134, 146, 574
TaiI ACGT 1 cut(s) 469
TaqI TCGA 4 cut(s) 129, 447, 521, 691
TasI AATT 3 cut(s) 493, 696, 734
TauI GCSGC 1 cut(s) 565
Tru1I TTAA 2 cut(s) 789, 874
Tru9I TTAA 2 cut(s) 789, 874
TseFI GTSAC 2 cut(s) 134, 146
TseI GCWGC 3 cut(s) 623, 632, 740
Tsp45I GTSAC 2 cut(s) 134, 146
TspDTI ATGAA 2 cut(s) 72, 753
Van91I CCANNNNNTGG 1 cut(s) 584
XhoI CTCGAG 1 cut(s) 690
XmiI GTMKAC 2 cut(s) 412, 771
XmnI GAANNNNTTC 2 cut(s) 63, 865
XspI CTAG 4 cut(s) 62, 152, 641, 864
Zsp2I ATGCAT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.