Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008119

Physical Location & Seq

Genomic Coordinates Reverse (-)

48040657 .. 48042338

Gene Structure 1682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG285900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAATTCGGGCCCCATAGAGATAAGCTCCGACGAGGATACGGGTCTCAACGACCTCGATGACGACAGCGCCGACTGGCTCTCCAATCTCATCGAGTCCGTCGAGAAAAAGTTTGGGGACGACGATTCCGATGACGTGGTGGTGATCGGCGAGGTTAACAGCGGGTCAAAGTGTTCCCTGAAGGAGGTGGATGACGATTGTGTGGTCTTGGATGGTGACCCGGACAAGGCGGTTTCGGTTGCGGACGACGAGTCGGGTAGCGGGTCGGACGATTTGGTTGTGGTGGGCGAGAAGGGCCAGATAGCGTGCAGAGACTATCCTCATCCACGACATCTTTGTGCCAAATTCCCTTTCACTTCTACGCCACATGAGAAGCACTGTGACCTGCTACTCACCACTGTGATTCTATACTTGCTGAAATGCAGTGTCACTGTTATGTCTGTGACTCTTTGGCACCCTGTGTACATTGGGGCATTGGCGCTTCGCATATTGGCCATTGTCATGCTACGGAGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD

Protein Analysis

172

Amino Acids

18.71

Weight (kDa)

4.35

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008119)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20270 FvH4_2g20270 FvH4_2g20270 FvH4_2g20270
malus_domestica	MD05G1186600.v1.1 MD10G1174400.v1.1 MD10G1174600.v1.1
prunus_persica	Prupe.8G213400_v2.0.a1
pyrus_communis	pycom05g17080 pycom10g15040
rosa_chinensis	RchiOBHm_Chr6g0286061
rosa_laevigata	RLG00000012585
rosa_multiflora	Rmu_co8125756.1_g000001 Rmu_co8336629.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182490
rosa_rugosa	Rorug06G0178700
rosa_samantha	Rh6AG290800 Rh6AG290900 Rh6BG294200 Rh6CG293700 Rh6CG293800 Rh6DG285800 Rh6DG285900
rosa_wichuraiana	Rw6G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	393
AccB1I	GGYRCC	1 cut(s)	453
AciI	CCGC	4 cut(s)	162, 230, 242, 261
AcoI	YGGCCR	1 cut(s)	492
AcsI	RAATTY	2 cut(s)	4, 344
AcuI	CTGAAG	1 cut(s)	200
AdeI	CACNNNGTG	1 cut(s)	460
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	2 cut(s)	184, 226
AhdI	GACNNNNNGTC	1 cut(s)	250
AjiI	CACGTC	1 cut(s)	136
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AleI	CACNNNNGTG	1 cut(s)	398
AluBI	AGCT	1 cut(s)	27
AluI	AGCT	1 cut(s)	27
Alw26I	GTCTC	2 cut(s)	50, 306
AoxI	GGCC	3 cut(s)	10, 295, 492
ApaI	GGGCCC	1 cut(s)	14
ApoI	RAATTY	2 cut(s)	4, 344
AspLEI	GCGC	2 cut(s)	71, 481
AspS9I	GGNCC	3 cut(s)	10, 11, 295
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	3 cut(s)	154, 227, 385
BaeGI	GKGCMC	1 cut(s)	14
BalI	TGGCCA	1 cut(s)	494
BanI	GGYRCC	1 cut(s)	453
BanII	GRGCYC	1 cut(s)	14
BccI	CCATC	1 cut(s)	206
BciVI	GTATCC	1 cut(s)	31
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	2 cut(s)	50, 306
BfoI	RGCGCY	2 cut(s)	72, 482
BfuAI	ACCTGC	1 cut(s)	393
BfuI	GTATCC	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	221
BmeRI	GACNNNNNGTC	1 cut(s)	250
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	3 cut(s)	10, 11, 295
BmiI	GGNNCC	3 cut(s)	12, 13, 455
BmrFI	CCNGG	1 cut(s)	221
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpuMI	CCSGG	1 cut(s)	221
BsaI	GGTCTC	1 cut(s)	50
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 226
Bse1I	ACTGG	1 cut(s)	80
BseGI	GGATG	3 cut(s)	196, 217, 322
BseLI	CCNNNNNNNGG	2 cut(s)	184, 226
BseNI	ACTGG	1 cut(s)	80
BseSI	GKGCMC	1 cut(s)	14
BsgI	GTGCAG	1 cut(s)	328
BshFI	GGCC	3 cut(s)	12, 297, 494
BshNI	GGYRCC	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	2 cut(s)	184, 226
BsmAI	GTCTC	2 cut(s)	50, 306
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	3 cut(s)	12, 297, 494
Bso31I	GGTCTC	1 cut(s)	50
Bsp120I	GGGCCC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp1407I	TGTACA	1 cut(s)	462
Bsp143I	GATC	1 cut(s)	144
BspACI	CCGC	4 cut(s)	162, 230, 242, 261
BspANI	GGCC	3 cut(s)	12, 297, 494
BspLI	GGNNCC	3 cut(s)	12, 13, 455
BspMI	ACCTGC	1 cut(s)	393
BspT107I	GGYRCC	1 cut(s)	453
BspTNI	GGTCTC	1 cut(s)	50
BsrGI	TGTACA	1 cut(s)	462
BsrI	ACTGG	1 cut(s)	80
BssMI	GATC	1 cut(s)	144
Bst4CI	ACNGT	3 cut(s)	380, 400, 433
BstAUI	TGTACA	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	307
BstEII	GGTNACC	1 cut(s)	215
BstENI	CCTNNNNNAGG	1 cut(s)	182
BstF5I	GGATG	3 cut(s)	196, 217, 322
BstH2I	RGCGCY	2 cut(s)	72, 482
BstHHI	GCGC	2 cut(s)	71, 481
BstKTI	GATC	1 cut(s)	147
BstMAI	GTCTC	2 cut(s)	50, 306
BstMBI	GATC	1 cut(s)	144
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstPI	GGTNACC	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	219
BstSLI	GKGCMC	1 cut(s)	14
BsuI	GTATCC	1 cut(s)	31
BsuRI	GGCC	3 cut(s)	12, 297, 494
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	3 cut(s)	196, 217, 322
BtsI	GCAGTG	1 cut(s)	430
BtsIMutI	CAGTG	4 cut(s)	376, 396, 429, 430
BveI	ACCTGC	1 cut(s)	393
Cac8I	GCNNGC	1 cut(s)	307
CfoI	GCGC	2 cut(s)	71, 481
Cfr13I	GGNCC	3 cut(s)	10, 11, 295
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	2 cut(s)	368, 502
CviJI	RGCY	5 cut(s)	12, 27, 79, 297, 494
CviKI_1	RGCY	5 cut(s)	12, 27, 79, 297, 494
CviQI	GTAC	1 cut(s)	463
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
DraIII	CACNNNGTG	1 cut(s)	460
DriI	GACNNNNNGTC	1 cut(s)	250
EaeI	YGGCCR	1 cut(s)	492
Eam1105I	GACNNNNNGTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	14
Eco31I	GGTCTC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	200
Eco91I	GGTNACC	1 cut(s)	215
EcoNI	CCTNNNNNAGG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	11
EcoO65I	GGTNACC	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	4
EcoT38I	GRGCYC	1 cut(s)	14
FaeI	CATG	2 cut(s)	371, 505
FaiI	YATR	6 cut(s)	17, 369, 409, 437, 488, 503
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	2 cut(s)	367, 501
FauI	CCCGC	2 cut(s)	155, 254
FokI	GGATG	3 cut(s)	203, 224, 309
FriOI	GRGCYC	1 cut(s)	14
GlaI	GCGC	2 cut(s)	70, 480
HaeII	RGCGCY	2 cut(s)	72, 482
HaeIII	GGCC	3 cut(s)	12, 297, 494
HapII	CCGG	1 cut(s)	221
HhaI	GCGC	2 cut(s)	71, 481
Hin1II	CATG	2 cut(s)	371, 505
Hin6I	GCGC	2 cut(s)	69, 479
HinP1I	GCGC	2 cut(s)	69, 479
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	5 cut(s)	95, 125, 251, 403, 445
HpaI	GTTAAC	1 cut(s)	157
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	3 cut(s)	154, 227, 385
Hpy166II	GTNNAC	2 cut(s)	157, 463
Hpy188I	TCNGA	3 cut(s)	31, 130, 268
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	2 cut(s)	157, 463
Hpy99I	CGWCG	4 cut(s)	35, 104, 125, 251
HpyAV	CCTTC	2 cut(s)	175, 286
HpyCH4III	ACNGT	3 cut(s)	380, 400, 433
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	2 cut(s)	309, 423
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	2 cut(s)	371, 505
HspAI	GCGC	2 cut(s)	69, 479
KspAI	GTTAAC	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	6 cut(s)	61, 191, 234, 311, 398, 471
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	4 cut(s)	215, 380, 427, 442
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MhlI	GDGCHC	1 cut(s)	14
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	2 cut(s)	4, 344
MluNI	TGGCCA	1 cut(s)	494
MlyI	GAGTC	3 cut(s)	104, 260, 439
MmeI	TCCRAC	2 cut(s)	54, 246
MnlI	CCTC	5 cut(s)	28, 65, 145, 178, 330
Mox20I	TGGCCA	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	4 cut(s)	336, 398, 434, 500
Msp20I	TGGCCA	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	162
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	294
NciI	CCSGG	1 cut(s)	221
NdeII	GATC	1 cut(s)	144
NlaIII	CATG	2 cut(s)	371, 505
NlaIV	GGNNCC	3 cut(s)	12, 13, 455
NmuCI	GTSAC	4 cut(s)	215, 380, 427, 442
OliI	CACNNNNGTG	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	3 cut(s)	69, 99, 126
PfeI	GAWTC	2 cut(s)	125, 403
PleI	GAGTC	3 cut(s)	103, 259, 439
PpsI	GAGTC	3 cut(s)	103, 259, 439
PspEI	GGTNACC	1 cut(s)	215
PspN4I	GGNNCC	3 cut(s)	12, 13, 455
PspOMI	GGGCCC	1 cut(s)	10
PspPI	GGNCC	3 cut(s)	10, 11, 295
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
RseI	CAYNNNNRTG	4 cut(s)	336, 398, 434, 500
SaqAI	TTAA	1 cut(s)	156
Sau3AI	GATC	1 cut(s)	144
Sau96I	GGNCC	3 cut(s)	10, 11, 295
SchI	GAGTC	3 cut(s)	104, 260, 439
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	14
SetI	ASST	6 cut(s)	29, 57, 138, 156, 189, 387
SmiMI	CAYNNNNRTG	4 cut(s)	336, 398, 434, 500
Sse9I	AATT	2 cut(s)	4, 344
SsiI	CCGC	4 cut(s)	162, 230, 242, 261
StyD4I	CCNGG	1 cut(s)	219
TaaI	ACNGT	3 cut(s)	380, 400, 433
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	3 cut(s)	57, 93, 102
TasI	AATT	2 cut(s)	4, 344
TatI	WGTACW	1 cut(s)	462
TfiI	GAWTC	2 cut(s)	125, 403
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	4 cut(s)	383, 403, 430, 436
TseFI	GTSAC	4 cut(s)	215, 380, 427, 442
Tsp45I	GTSAC	4 cut(s)	215, 380, 427, 442
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	4 cut(s)	383, 403, 430, 436
XagI	CCTNNNNNAGG	1 cut(s)	182
XapI	RAATTY	2 cut(s)	4, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.