MD10G1174600.v1.1

rpm1 interacting protein 13

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
26706539 .. 26708821
2283 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1174600.v1.1.491

Sequence Viewer

Length: 972 bp
ATGGTATCACCCGTATTGAATTCTGGATTCCCTTCCTTGCGCGCTCGCCAATCCGCTGCCACTTGCGACTCTGCCATGGAAACTCGCGTTGCTTCCTTGGAGGCTATCATCGCCTCTTTACCTTCCCTCATCGCCACTGCGATCGACAATGCCTTCGAAAAGGCCTTCACCAAGGCCTTCGAAAAGGCCTTCACCAAAGCCTTCGATGCCTCTCTTGAAAAGTTTCGTCGGGAAATGCTCTCTCGAGGTGCCGGGGAAGGCATCTCTGCCCCTCTTGCCGGCGATCATCATGCTTCTCCTGCAACTGATCCGATCCAGCTACCTCGGAGCCCAATCTGTGCTGAAGGAGCCCAATCGCGTATCTCCGACGACCAACTGGGTCGGATCGACCTGGATGAGGAGGACAACTTTGATTGTGTATCGGAGCTTCTGGAATCCGTCGACAAGGTAACCGACGACGATGATTCCGATGACGTTGTGTTGATTAGTGAGGTCAACTCAAAGCCTAGCCAAAAGTCTTCGAAACGGACGGTGGCGGATGATGACGATGATTGTGTGGTCTTGGACGGCGACCCGGATAAGCCCGTTTCGGTGGTGGAGGATTCGGGTAGCGGCTCCGACGAGTTGATTGTGGTTGGGGAAACGGGGCAGGTAGCATGTAGAGACTACCCTCATCCACGACATCTTTGTGCCAAATTCCCTTTCAAAACTACCCGGCCCGAGAACCACTGTAAACTTTGTCATTGTTATGTCTGTGACTCGCCGGCGCCATGTGTACATTGGACCTTTAATCATTGTTATGCCACGGATGAAGAAGAGCTATATAGAAAATGGAGAAAAATATTCAAGACACTGAAAATTGGTCAGAATTCTAGCCAGGAAGTTAGCCAGCAACAGCCTCCGCTTCAGCAACCTCCCATTCAGCAACCTTTGTTTCAGCAGCCGTCTCCTATCCAGTGTCGCTGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

324

Amino Acids

35.61

Weight (kDa)

4.79

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 640
AccB1I GGYRCC 2 cut(s) 248, 766
AccI GTMKAC 1 cut(s) 441
AccII CGCG 3 cut(s) 42, 87, 358
AciI CCGC 4 cut(s) 54, 536, 612, 902
AclWI GGATC 3 cut(s) 302, 307, 392
AcsI RAATTY 3 cut(s) 19, 695, 868
AcuI CTGAAG 2 cut(s) 363, 890
AcyI GRCGYC 1 cut(s) 767
AfaI GTAC 1 cut(s) 777
AfiI CCNNNNNNNGG 2 cut(s) 278, 397
AgsI TTSAA 4 cut(s) 19, 218, 706, 847
AjnI CCWGG 2 cut(s) 390, 876
AjuI GAANNNNNNNTTGG 2 cut(s) 686, 718
AluBI AGCT 3 cut(s) 319, 427, 820
AluI AGCT 3 cut(s) 319, 427, 820
Alw26I GTCTC 2 cut(s) 657, 951
AlwI GGATC 3 cut(s) 302, 307, 392
Ama87I CYCGRG 2 cut(s) 243, 719
AoxI GGCC 4 cut(s) 162, 174, 186, 716
ApeKI GCWGC 2 cut(s) 56, 940
ApoI RAATTY 3 cut(s) 19, 695, 868
ArsI GACNNNNNNTTYG 2 cut(s) 137, 169
Asp700I GAANNNNTTC 1 cut(s) 222
AspLEI GCGC 3 cut(s) 42, 44, 769
AspS9I GGNCC 2 cut(s) 717, 783
AsuC2I CCSGG 3 cut(s) 253, 575, 715
AsuHPI GGTGA 2 cut(s) 160, 184
AsuII TTCGAA 3 cut(s) 156, 180, 521
AvaI CYCGRG 2 cut(s) 243, 719
AvaII GGWCC 1 cut(s) 783
BanI GGYRCC 2 cut(s) 248, 766
BanII GRGCYC 2 cut(s) 332, 352
BarI GAAGNNNNNNTAC 2 cut(s) 411, 443
BbsI GAAGAC 1 cut(s) 510
BbvI GCAGC 2 cut(s) 43, 952
BceAI ACGGC 2 cut(s) 583, 928
BcgI CGANNNNNNTGC 2 cut(s) 272, 306
BciT130I CCWGG 2 cut(s) 392, 878
BcnI CCSGG 3 cut(s) 253, 575, 715
BcoDI GTCTC 2 cut(s) 657, 951
BfaI CTAG 2 cut(s) 507, 873
BfoI RGCGCY 1 cut(s) 770
BfuAI ACCTGC 1 cut(s) 640
BisI GCNGC 3 cut(s) 57, 613, 941
BlsI GCNGC 3 cut(s) 58, 614, 942
Bme1390I CCNGG 5 cut(s) 253, 392, 575, 715, 878
Bme18I GGWCC 1 cut(s) 783
BmeT110I CYCGRG 2 cut(s) 243, 719
BmgT120I GGNCC 2 cut(s) 717, 783
BmiI GGNNCC 5 cut(s) 250, 329, 349, 616, 768
BmrFI CCNGG 5 cut(s) 253, 392, 575, 715, 878
BmrI ACTGGG 1 cut(s) 386
BmsI GCATC 2 cut(s) 196, 270
BmuI ACTGGG 1 cut(s) 386
BpiI GAAGAC 1 cut(s) 510
BplI GAGNNNNNCTC 2 cut(s) 482, 514
Bpu14I TTCGAA 3 cut(s) 156, 180, 521
BpuMI CCSGG 3 cut(s) 253, 575, 715
BsaHI GRCGYC 1 cut(s) 767
BsaJI CCNNGG 6 cut(s) 75, 96, 171, 252, 323, 804
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 397
Bse118I RCCGGY 2 cut(s) 278, 763
Bse1I ACTGG 2 cut(s) 381, 955
BseBI CCWGG 2 cut(s) 392, 878
BseDI CCNNGG 6 cut(s) 75, 96, 171, 252, 323, 804
BseGI GGATG 4 cut(s) 400, 544, 673, 814
BseLI CCNNNNNNNGG 2 cut(s) 278, 397
BseNI ACTGG 2 cut(s) 381, 955
BsePI GCGCGC 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 413
BseXI GCAGC 2 cut(s) 43, 952
Bsh1236I CGCG 3 cut(s) 42, 87, 358
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 4 cut(s) 164, 176, 188, 718
BshNI GGYRCC 2 cut(s) 248, 766
BsiEI CGRYCG 1 cut(s) 144
BsiHKCI CYCGRG 2 cut(s) 243, 719
BsiSI CCGG 5 cut(s) 252, 279, 575, 715, 764
BslI CCNNNNNNNGG 2 cut(s) 278, 397
BsmAI GTCTC 2 cut(s) 657, 951
BsmBI CGTCTC 1 cut(s) 951
BsnI GGCC 4 cut(s) 164, 176, 188, 718
BsoBI CYCGRG 2 cut(s) 243, 719
Bsp119I TTCGAA 3 cut(s) 156, 180, 521
Bsp1286I GDGCHC 2 cut(s) 332, 352
Bsp1407I TGTACA 1 cut(s) 775
Bsp143I GATC 5 cut(s) 141, 283, 307, 312, 384
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 4 cut(s) 54, 536, 612, 902
BspANI GGCC 4 cut(s) 164, 176, 188, 718
BspFNI CGCG 3 cut(s) 42, 87, 358
BspLI GGNNCC 5 cut(s) 250, 329, 349, 616, 768
BspMI ACCTGC 1 cut(s) 640
BspPI GGATC 3 cut(s) 302, 307, 392
BspQI GCTCTTC 1 cut(s) 810
BspT104I TTCGAA 3 cut(s) 156, 180, 521
BspT107I GGYRCC 2 cut(s) 248, 766
BsrFI RCCGGY 2 cut(s) 278, 763
BsrGI TGTACA 1 cut(s) 775
BsrI ACTGG 2 cut(s) 381, 955
BssAI RCCGGY 2 cut(s) 278, 763
BssECI CCNNGG 6 cut(s) 75, 96, 171, 252, 323, 804
BssHII GCGCGC 1 cut(s) 40
BssMI GATC 5 cut(s) 141, 283, 307, 312, 384
BssNI GRCGYC 1 cut(s) 767
BssT1I CCWWGG 3 cut(s) 75, 96, 171
Bst2UI CCWGG 2 cut(s) 392, 878
Bst4CI ACNGT 2 cut(s) 532, 731
Bst6I CTCTTC 1 cut(s) 810
BstACI GRCGYC 1 cut(s) 767
BstAUI TGTACA 1 cut(s) 775
BstBI TTCGAA 3 cut(s) 156, 180, 521
BstC8I GCNNGC 5 cut(s) 42, 46, 280, 765, 890
BstDSI CCRYGG 2 cut(s) 75, 804
BstEII GGTNACC 1 cut(s) 448
BstENI CCTNNNNNAGG 1 cut(s) 395
BstF5I GGATG 4 cut(s) 400, 544, 673, 814
BstFNI CGCG 3 cut(s) 42, 87, 358
BstH2I RGCGCY 1 cut(s) 770
BstHHI GCGC 3 cut(s) 42, 44, 769
BstKTI GATC 5 cut(s) 144, 286, 310, 315, 387
BstMAI GTCTC 2 cut(s) 657, 951
BstMBI GATC 5 cut(s) 141, 283, 307, 312, 384
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 5 cut(s) 110, 206, 275, 299, 347
BstNI CCWGG 2 cut(s) 392, 878
BstNSI RCATGY 1 cut(s) 660
BstPI GGTNACC 1 cut(s) 448
BstSCI CCNGG 5 cut(s) 251, 390, 573, 713, 876
BstUI CGCG 3 cut(s) 42, 87, 358
BstV1I GCAGC 2 cut(s) 43, 952
BstV2I GAAGAC 1 cut(s) 510
BsuRI GGCC 4 cut(s) 164, 176, 188, 718
BtgI CCRYGG 2 cut(s) 75, 804
BtgZI GCGATG 2 cut(s) 94, 115
BtsCI GGATG 4 cut(s) 400, 544, 673, 814
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 4 cut(s) 135, 727, 851, 962
BveI ACCTGC 1 cut(s) 640
Cac8I GCNNGC 5 cut(s) 42, 46, 280, 765, 890
CfoI GCGC 3 cut(s) 42, 44, 769
Cfr10I RCCGGY 2 cut(s) 278, 763
Cfr13I GGNCC 2 cut(s) 717, 783
Csp6I GTAC 1 cut(s) 776
CviAII CATG 4 cut(s) 76, 290, 657, 771
CviQI GTAC 1 cut(s) 776
DinI GGCGCC 1 cut(s) 768
DpnI GATC 5 cut(s) 143, 285, 309, 314, 386
DpnII GATC 5 cut(s) 141, 283, 307, 312, 384
Eam1104I CTCTTC 1 cut(s) 810
EarI CTCTTC 1 cut(s) 810
EciI GGCGGA 1 cut(s) 551
Eco130I CCWWGG 3 cut(s) 75, 96, 171
Eco147I AGGCCT 3 cut(s) 164, 176, 188
Eco24I GRGCYC 2 cut(s) 332, 352
Eco47I GGWCC 1 cut(s) 783
Eco57I CTGAAG 2 cut(s) 363, 890
Eco88I CYCGRG 2 cut(s) 243, 719
Eco91I GGTNACC 1 cut(s) 448
EcoNI CCTNNNNNAGG 1 cut(s) 395
EcoO65I GGTNACC 1 cut(s) 448
EcoRI GAATTC 2 cut(s) 19, 868
EcoRII CCWGG 2 cut(s) 390, 876
EcoT14I CCWWGG 3 cut(s) 75, 96, 171
EcoT38I GRGCYC 2 cut(s) 332, 352
EgeI GGCGCC 1 cut(s) 768
EheI GGCGCC 1 cut(s) 768
ErhI CCWWGG 3 cut(s) 75, 96, 171
Esp3I CGTCTC 1 cut(s) 951
FaeI CATG 4 cut(s) 79, 293, 660, 774
FaiI YATR 9 cut(s) 77, 291, 658, 750, 772, 801, 823, 825, 970
FatI CATG 4 cut(s) 75, 289, 656, 770
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 3 cut(s) 57, 613, 941
FokI GGATG 4 cut(s) 407, 551, 660, 821
FriOI GRGCYC 2 cut(s) 332, 352
Fsp4HI GCNGC 3 cut(s) 57, 613, 941
FspBI CTAG 2 cut(s) 507, 873
GlaI GCGC 3 cut(s) 41, 43, 768
GluI GCNGC 3 cut(s) 57, 613, 941
HaeII RGCGCY 1 cut(s) 770
HaeIII GGCC 4 cut(s) 164, 176, 188, 718
HapII CCGG 5 cut(s) 252, 279, 575, 715, 764
HhaI GCGC 3 cut(s) 42, 44, 769
Hin1I GRCGYC 1 cut(s) 767
Hin1II CATG 4 cut(s) 79, 293, 660, 774
Hin6I GCGC 3 cut(s) 40, 42, 767
HinP1I GCGC 3 cut(s) 40, 42, 767
HincII GTYRAC 2 cut(s) 442, 496
HindII GTYRAC 2 cut(s) 442, 496
HinfI GANTC 6 cut(s) 27, 68, 434, 464, 602, 758
HpaII CCGG 5 cut(s) 252, 279, 575, 715, 764
HphI GGTGA 2 cut(s) 160, 184
Hpy166II GTNNAC 4 cut(s) 442, 496, 734, 776
Hpy188I TCNGA 8 cut(s) 312, 327, 367, 384, 424, 469, 619, 867
Hpy188III TCNNGA 6 cut(s) 24, 215, 230, 243, 431, 847
Hpy8I GTNNAC 4 cut(s) 442, 496, 734, 776
Hpy99I CGWCG 6 cut(s) 231, 371, 443, 458, 461, 623
HpyAV CCTTC 9 cut(s) 42, 132, 163, 175, 187, 199, 211, 251, 338
HpyCH4III ACNGT 2 cut(s) 532, 731
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 5 cut(s) 110, 206, 275, 299, 347
HpySE526I ACGT 1 cut(s) 474
Hsp92I GRCGYC 1 cut(s) 767
Hsp92II CATG 4 cut(s) 79, 293, 660, 774
HspAI GCGC 3 cut(s) 40, 42, 767
KasI GGCGCC 1 cut(s) 766
KroI GCCGGC 2 cut(s) 278, 763
KroNI GCCGGC 2 cut(s) 280, 765
Kzo9I GATC 5 cut(s) 141, 283, 307, 312, 384
LguI GCTCTTC 1 cut(s) 810
LmnI GCTCC 4 cut(s) 327, 347, 424, 620
Lsp1109I GCAGC 2 cut(s) 43, 952
LweI GCATC 2 cut(s) 196, 270
MaeI CTAG 2 cut(s) 507, 873
MaeII ACGT 1 cut(s) 474
MaeIII GTNAC 2 cut(s) 448, 755
MalI GATC 5 cut(s) 143, 285, 309, 314, 386
MboI GATC 5 cut(s) 141, 283, 307, 312, 384
MboII GAAGA 3 cut(s) 510, 824, 827
MhlI GDGCHC 2 cut(s) 332, 352
MluCI AATT 4 cut(s) 19, 695, 858, 868
Mly113I GGCGCC 1 cut(s) 767
MlyI GAGTC 2 cut(s) 62, 752
MmeI TCCRAC 3 cut(s) 362, 390, 642
MreI CGCCGGCG 1 cut(s) 763
MroNI GCCGGC 2 cut(s) 278, 763
MroXI GAANNNNTTC 1 cut(s) 222
MseI TTAA 1 cut(s) 789
MslI CAYNNNNRTG 3 cut(s) 687, 747, 798
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 5 cut(s) 252, 279, 575, 715, 764
MspR9I CCNGG 5 cut(s) 253, 392, 575, 715, 878
MvaI CCWGG 2 cut(s) 392, 878
MvnI CGCG 3 cut(s) 42, 87, 358
MwoI GCNNNNNNNGC 5 cut(s) 110, 206, 275, 299, 347
NaeI GCCGGC 2 cut(s) 280, 765
NarI GGCGCC 1 cut(s) 767
NciI CCSGG 3 cut(s) 253, 575, 715
NcoI CCATGG 1 cut(s) 75
NdeII GATC 5 cut(s) 141, 283, 307, 312, 384
NgoMIV GCCGGC 2 cut(s) 278, 763
NlaIII CATG 4 cut(s) 79, 293, 660, 774
NlaIV GGNNCC 5 cut(s) 250, 329, 349, 616, 768
NmuCI GTSAC 1 cut(s) 755
NspI RCATGY 1 cut(s) 660
NspV TTCGAA 3 cut(s) 156, 180, 521
PaeR7I CTCGAG 1 cut(s) 243
PauI GCGCGC 1 cut(s) 40
PceI AGGCCT 3 cut(s) 164, 176, 188
PciSI GCTCTTC 1 cut(s) 810
PcsI WCGNNNNNNNCGW 1 cut(s) 465
PdiI GCCGGC 2 cut(s) 280, 765
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 4 cut(s) 27, 434, 464, 602
PkrI GCNGC 3 cut(s) 58, 614, 942
Ple19I CGATCG 1 cut(s) 144
PleI GAGTC 2 cut(s) 62, 752
PluTI GGCGCC 1 cut(s) 770
PpsI GAGTC 2 cut(s) 62, 752
Psp6I CCWGG 2 cut(s) 390, 876
PspEI GGTNACC 1 cut(s) 448
PspGI CCWGG 2 cut(s) 390, 876
PspN4I GGNNCC 5 cut(s) 250, 329, 349, 616, 768
PspPI GGNCC 2 cut(s) 717, 783
PteI GCGCGC 1 cut(s) 40
PvuI CGATCG 1 cut(s) 144
RsaI GTAC 1 cut(s) 777
RsaNI GTAC 1 cut(s) 776
RseI CAYNNNNRTG 3 cut(s) 687, 747, 798
SalI GTCGAC 1 cut(s) 440
SapI GCTCTTC 1 cut(s) 810
SaqAI TTAA 1 cut(s) 789
SatI GCNGC 3 cut(s) 57, 613, 941
Sau3AI GATC 5 cut(s) 141, 283, 307, 312, 384
Sau96I GGNCC 2 cut(s) 717, 783
SchI GAGTC 2 cut(s) 62, 752
ScrFI CCNGG 5 cut(s) 253, 392, 575, 715, 878
SduI GDGCHC 2 cut(s) 332, 352
SfaNI GCATC 2 cut(s) 196, 270
SfoI GGCGCC 1 cut(s) 768
Sfr274I CTCGAG 1 cut(s) 243
SfuI TTCGAA 3 cut(s) 156, 180, 521
SgrAI CRCCGGYG 1 cut(s) 763
SinI GGWCC 1 cut(s) 783
SlaI CTCGAG 1 cut(s) 243
SmiMI CAYNNNNRTG 3 cut(s) 687, 747, 798
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
Sse9I AATT 4 cut(s) 19, 695, 858, 868
SseBI AGGCCT 3 cut(s) 164, 176, 188
SsiI CCGC 4 cut(s) 54, 536, 612, 902
SspDI GGCGCC 1 cut(s) 766
SspI AATATT 1 cut(s) 843
SspMI CTAG 2 cut(s) 507, 873
StuI AGGCCT 3 cut(s) 164, 176, 188
StyD4I CCNGG 5 cut(s) 251, 390, 573, 713, 876
StyI CCWWGG 3 cut(s) 75, 96, 171
TaaI ACNGT 2 cut(s) 532, 731
TaiI ACGT 1 cut(s) 477
TaqI TCGA 8 cut(s) 144, 156, 180, 204, 244, 387, 441, 521
TasI AATT 4 cut(s) 19, 695, 858, 868
TatI WGTACW 1 cut(s) 775
TauI GCSGC 1 cut(s) 615
TfiI GAWTC 4 cut(s) 27, 434, 464, 602
Tru1I TTAA 1 cut(s) 789
Tru9I TTAA 1 cut(s) 789
TscAI CASTG 4 cut(s) 142, 734, 858, 962
TseFI GTSAC 1 cut(s) 755
TseI GCWGC 2 cut(s) 56, 940
Tsp45I GTSAC 1 cut(s) 755
TspDTI ATGAA 1 cut(s) 825
TspGWI ACGGA 3 cut(s) 427, 541, 821
TspRI CASTG 4 cut(s) 142, 734, 858, 962
VpaK11BI GGWCC 1 cut(s) 783
XagI CCTNNNNNAGG 1 cut(s) 395
XapI RAATTY 3 cut(s) 19, 695, 868
XceI RCATGY 1 cut(s) 660
XcmI CCANNNNNNNNNTGG 1 cut(s) 777
XhoI CTCGAG 1 cut(s) 243
XmiI GTMKAC 1 cut(s) 441
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 2 cut(s) 507, 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.