Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8336629.1

Orthogroup ID

OG0008119

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 929

Gene Structure 928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8336629.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 928 bp

atgcagtgtcactgttatgtctgtgactctttggcaccctgtgtacattggggcattggcgctttgcatattggccattgtcatgctacggagaaagtagagatgtggaaagtactgaggagaaatttcaagttggggagaagtgcttccatgccagttataaaagtatctttggctctgcctcaacttaatcaagttccacctcttgatattattagattggcacccaactctattccacagactcaggtctgtaggccaactacgacccatgctgtctcctccaccagccctactttgccagcacctacctctataccactgaatcaggtcccgaggtcaactttgatccgtgctcccccctcaaccacccttatcaattctactgtcaggaatcaaggtagaagccaccaaccaagatttctttcatccaagaatggagtccaaccagcttctgtccaaccatcttcagcttctcagcagttgcatagtaatgctgtaaggagtagcagagctcagaatattggtaatggaggccttcactctacctcttcaccgacaatgtttaaaagagcagggcctgttcggatttctttgggaaggaaccgttccgcatatggttcatcatataacagcaatcatgttaatccatcacagtgtggttcgttaaataacagcggctgtgccaatccatcacaatatggcagaattccctcccccatggcagcatcacatgacggaattcgcttcagttggcagggggttcataacagcttgaatcggatcccctccgtgcccatgggcagtggcattgttggaagtgcattgcctccccagcagccccaaacatacagtcaaccttttgctgagtcagcatatagccaaaatgttcagcaagggagtcaaattcaaaatgatgcccaaaata

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD

Protein Analysis

309

Amino Acids

33.14

Weight (kDa)

10.44

Isoelectric Point (pI)

56.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008119)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20270 FvH4_2g20270 FvH4_2g20270 FvH4_2g20270
malus_domestica	MD05G1186600.v1.1 MD10G1174400.v1.1 MD10G1174600.v1.1
prunus_persica	Prupe.8G213400_v2.0.a1
pyrus_communis	pycom05g17080 pycom10g15040
rosa_chinensis	RchiOBHm_Chr6g0286061
rosa_laevigata	RLG00000012585
rosa_multiflora	Rmu_co8125756.1_g000001 Rmu_co8336629.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182490
rosa_rugosa	Rorug06G0178700
rosa_samantha	Rh6AG290800 Rh6AG290900 Rh6BG294200 Rh6CG293700 Rh6CG293800 Rh6DG285800 Rh6DG285900
rosa_wichuraiana	Rw6G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	161
AccB1I	GGYRCC	2 cut(s)	34, 223
AciI	CCGC	2 cut(s)	612, 678
AclWI	GGATC	3 cut(s)	343, 778, 791
AcoI	YGGCCR	1 cut(s)	73
AcsI	RAATTY	4 cut(s)	124, 708, 741, 906
AcuI	CTGAAG	2 cut(s)	453, 733
AdeI	CACNNNGTG	2 cut(s)	41, 659
AfaI	GTAC	2 cut(s)	45, 114
AgsI	TTSAA	3 cut(s)	130, 778, 911
AjuI	GAANNNNNNNTTGG	4 cut(s)	405, 409, 437, 441
AluBI	AGCT	4 cut(s)	452, 473, 515, 774
AluI	AGCT	4 cut(s)	452, 473, 515, 774
Alw21I	GWGCWC	2 cut(s)	358, 517
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	3 cut(s)	343, 778, 791
AlwNI	CAGNNNCTG	3 cut(s)	455, 581, 681
Ama87I	CYCGRG	1 cut(s)	334
AoxI	GGCC	4 cut(s)	73, 257, 535, 578
ApeKI	GCWGC	2 cut(s)	725, 838
ApoI	RAATTY	4 cut(s)	124, 708, 741, 906
ArsI	GACNNNNNNTTYG	2 cut(s)	838, 870
Asp700I	GAANNNNTTC	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	2 cut(s)	331, 578
AsuHPI	GGTGA	1 cut(s)	546
AvaI	CYCGRG	1 cut(s)	334
AvaII	GGWCC	1 cut(s)	331
BaeGI	GKGCMC	1 cut(s)	798
BalI	TGGCCA	1 cut(s)	75
BamHI	GGATCC	1 cut(s)	783
BanI	GGYRCC	2 cut(s)	34, 223
BanII	GRGCYC	1 cut(s)	517
Bbv12I	GWGCWC	2 cut(s)	358, 517
BbvI	GCAGC	2 cut(s)	737, 850
BccI	CCATC	3 cut(s)	472, 658, 700
BcoDI	GTCTC	1 cut(s)	283
BfmI	CTRYAG	1 cut(s)	253
BfoI	RGCGCY	1 cut(s)	63
BisI	GCNGC	3 cut(s)	679, 726, 839
BlsI	GCNGC	3 cut(s)	680, 727, 840
BmcAI	AGTACT	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	331
BmeT110I	CYCGRG	1 cut(s)	334
BmgT120I	GGNCC	2 cut(s)	331, 578
BmiI	GGNNCC	5 cut(s)	36, 225, 333, 605, 785
BmsI	GCATC	2 cut(s)	737, 907
BoxI	GACNNNNGTC	1 cut(s)	248
BsaJI	CCNNGG	3 cut(s)	335, 720, 798
Bse1I	ACTGG	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	824
BseDI	CCNNGG	3 cut(s)	335, 720, 798
BseGI	GGATG	1 cut(s)	428
BseMI	GCAATG	1 cut(s)	824
BseMII	CTCAG	5 cut(s)	107, 260, 491, 530, 858
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	2 cut(s)	133, 271
BseSI	GKGCMC	1 cut(s)	798
BseXI	GCAGC	2 cut(s)	737, 850
BseYI	CCCAGC	1 cut(s)	834
BshFI	GGCC	4 cut(s)	75, 259, 537, 580
BshNI	GGYRCC	2 cut(s)	34, 223
BsiHKAI	GWGCWC	2 cut(s)	358, 517
BsiHKCI	CYCGRG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	317
BsmAI	GTCTC	1 cut(s)	283
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	4 cut(s)	75, 259, 537, 580
BsoBI	CYCGRG	1 cut(s)	334
Bsp1286I	GDGCHC	3 cut(s)	358, 517, 798
Bsp1407I	TGTACA	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	348, 783
Bsp19I	CCATGG	2 cut(s)	720, 798
BspACI	CCGC	2 cut(s)	612, 678
BspANI	GGCC	4 cut(s)	75, 259, 537, 580
BspCNI	CTCAG	5 cut(s)	108, 259, 490, 529, 859
BspLI	GGNNCC	5 cut(s)	36, 225, 333, 605, 785
BspPI	GGATC	3 cut(s)	343, 778, 791
BspT107I	GGYRCC	2 cut(s)	34, 223
BsrDI	GCAATG	1 cut(s)	824
BsrGI	TGTACA	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	155
BssECI	CCNNGG	3 cut(s)	335, 720, 798
BssMI	GATC	2 cut(s)	348, 783
BssT1I	CCWWGG	2 cut(s)	720, 798
Bst4CI	ACNGT	5 cut(s)	14, 388, 608, 657, 854
Bst6I	CTCTTC	1 cut(s)	556
BstAUI	TGTACA	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	5 cut(s)	116, 246, 477, 516, 867
BstDSI	CCRYGG	2 cut(s)	720, 798
BstF5I	GGATG	1 cut(s)	428
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	2 cut(s)	351, 786
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	2 cut(s)	348, 783
BstMWI	GCNNNNNNNGC	2 cut(s)	835, 872
BstPAI	GACNNNNGTC	1 cut(s)	248
BstSFI	CTRYAG	1 cut(s)	253
BstSLI	GKGCMC	1 cut(s)	798
BstV1I	GCAGC	2 cut(s)	737, 850
BstX2I	RGATCY	1 cut(s)	783
BstYI	RGATCY	1 cut(s)	783
BsuRI	GGCC	4 cut(s)	75, 259, 537, 580
BtgI	CCRYGG	2 cut(s)	720, 798
BtsCI	GGATG	1 cut(s)	428
BtsI	GCAGTG	2 cut(s)	11, 811
BtsIMutI	CAGTG	5 cut(s)	10, 11, 320, 662, 811
Cac8I	GCNNGC	1 cut(s)	303
CaiI	CAGNNNCTG	3 cut(s)	455, 581, 681
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	331, 578
Csp6I	GTAC	2 cut(s)	44, 113
CviAII	CATG	7 cut(s)	83, 151, 272, 641, 721, 734, 799
CviQI	GTAC	2 cut(s)	44, 113
DdeI	CTNAG	5 cut(s)	116, 246, 477, 516, 867
DpnI	GATC	2 cut(s)	350, 785
DpnII	GATC	2 cut(s)	348, 783
DraI	TTTAAA	1 cut(s)	568
DraIII	CACNNNGTG	2 cut(s)	41, 659
EaeI	YGGCCR	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	556
EarI	CTCTTC	1 cut(s)	556
Ecl136II	GAGCTC	1 cut(s)	515
Eco130I	CCWWGG	2 cut(s)	720, 798
Eco147I	AGGCCT	1 cut(s)	537
Eco24I	GRGCYC	1 cut(s)	517
Eco47I	GGWCC	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	515
Eco57I	CTGAAG	2 cut(s)	453, 733
Eco88I	CYCGRG	1 cut(s)	334
EcoICRI	GAGCTC	1 cut(s)	515
EcoO109I	RGGNCCY	2 cut(s)	331, 578
EcoRI	GAATTC	2 cut(s)	708, 741
EcoT14I	CCWWGG	2 cut(s)	720, 798
EcoT38I	GRGCYC	1 cut(s)	517
ErhI	CCWWGG	2 cut(s)	720, 798
FaeI	CATG	7 cut(s)	86, 154, 275, 644, 724, 737, 802
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	7 cut(s)	82, 150, 271, 640, 720, 733, 798
FauNDI	CATATG	1 cut(s)	616
Fnu4HI	GCNGC	3 cut(s)	679, 726, 839
FokI	GGATG	1 cut(s)	415
FriOI	GRGCYC	1 cut(s)	517
Fsp4HI	GCNGC	3 cut(s)	679, 726, 839
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	3 cut(s)	679, 726, 839
GsaI	CCCAGC	1 cut(s)	838
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	4 cut(s)	75, 259, 537, 580
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	7 cut(s)	86, 154, 275, 644, 724, 737, 802
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HincII	GTYRAC	2 cut(s)	342, 857
HindII	GTYRAC	2 cut(s)	342, 857
HinfI	GANTC	8 cut(s)	26, 244, 325, 394, 441, 778, 869, 901
HphI	GGTGA	1 cut(s)	546
Hpy166II	GTNNAC	3 cut(s)	44, 342, 857
Hpy188I	TCNGA	3 cut(s)	519, 588, 783
Hpy188III	TCNNGA	3 cut(s)	206, 334, 391
Hpy8I	GTNNAC	3 cut(s)	44, 342, 857
HpyAV	CCTTC	2 cut(s)	548, 594
HpyCH4III	ACNGT	5 cut(s)	14, 388, 608, 657, 854
HpyCH4V	TGCA	4 cut(s)	4, 67, 487, 824
HpyF10VI	GCNNNNNNNGC	2 cut(s)	835, 872
HpyF3I	CTNAG	5 cut(s)	116, 246, 477, 516, 867
Hsp92II	CATG	7 cut(s)	86, 154, 275, 644, 724, 737, 802
HspAI	GCGC	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	348, 783
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	2 cut(s)	737, 850
LweI	GCATC	2 cut(s)	737, 907
MaeIII	GTNAC	2 cut(s)	8, 23
MalI	GATC	2 cut(s)	350, 785
MboI	GATC	2 cut(s)	348, 783
MboII	GAAGA	2 cut(s)	459, 543
MflI	RGATCY	1 cut(s)	783
MhlI	GDGCHC	3 cut(s)	358, 517, 798
MlsI	TGGCCA	1 cut(s)	75
MluCI	AATT	5 cut(s)	124, 379, 708, 741, 906
MluNI	TGGCCA	1 cut(s)	75
MlyI	GAGTC	5 cut(s)	20, 238, 450, 878, 910
MmeI	TCCRAC	3 cut(s)	469, 484, 796
Mox20I	TGGCCA	1 cut(s)	75
MroXI	GAANNNNTTC	1 cut(s)	145
MscI	TGGCCA	1 cut(s)	75
MseI	TTAA	4 cut(s)	189, 567, 645, 668
MslI	CAYNNNNRTG	4 cut(s)	15, 81, 492, 655
Msp20I	TGGCCA	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	678
MwoI	GCNNNNNNNGC	2 cut(s)	835, 872
NcoI	CCATGG	2 cut(s)	720, 798
NdeI	CATATG	1 cut(s)	616
NdeII	GATC	2 cut(s)	348, 783
NlaIII	CATG	7 cut(s)	86, 154, 275, 644, 724, 737, 802
NlaIV	GGNNCC	5 cut(s)	36, 225, 333, 605, 785
NmuCI	GTSAC	2 cut(s)	8, 23
PceI	AGGCCT	1 cut(s)	537
PdmI	GAANNNNTTC	1 cut(s)	145
PfeI	GAWTC	3 cut(s)	325, 394, 778
PkrI	GCNGC	3 cut(s)	680, 727, 840
PleI	GAGTC	5 cut(s)	20, 238, 449, 877, 909
PpsI	GAGTC	5 cut(s)	20, 238, 449, 877, 909
PpuMI	RGGWCCY	1 cut(s)	331
PshAI	GACNNNNGTC	1 cut(s)	248
PsiI	TTATAA	1 cut(s)	161
Psp124BI	GAGCTC	1 cut(s)	517
Psp5II	RGGWCCY	1 cut(s)	331
PspFI	CCCAGC	1 cut(s)	834
PspN4I	GGNNCC	5 cut(s)	36, 225, 333, 605, 785
PspPI	GGNCC	2 cut(s)	331, 578
PspPPI	RGGWCCY	1 cut(s)	331
PstNI	CAGNNNCTG	3 cut(s)	455, 581, 681
PsuI	RGATCY	1 cut(s)	783
RsaI	GTAC	2 cut(s)	45, 114
RsaNI	GTAC	2 cut(s)	44, 113
RseI	CAYNNNNRTG	4 cut(s)	15, 81, 492, 655
SacI	GAGCTC	1 cut(s)	517
SaqAI	TTAA	4 cut(s)	189, 567, 645, 668
SatI	GCNGC	3 cut(s)	679, 726, 839
Sau3AI	GATC	2 cut(s)	348, 783
Sau96I	GGNCC	2 cut(s)	331, 578
ScaI	AGTACT	1 cut(s)	114
SchI	GAGTC	5 cut(s)	20, 238, 450, 878, 910
SduI	GDGCHC	3 cut(s)	358, 517, 798
SfaNI	GCATC	2 cut(s)	737, 907
SfcI	CTRYAG	1 cut(s)	253
SinI	GGWCC	1 cut(s)	331
SmiMI	CAYNNNNRTG	4 cut(s)	15, 81, 492, 655
Sse9I	AATT	5 cut(s)	124, 379, 708, 741, 906
SseBI	AGGCCT	1 cut(s)	537
SsiI	CCGC	2 cut(s)	612, 678
SspI	AATATT	1 cut(s)	523
SstI	GAGCTC	1 cut(s)	517
StuI	AGGCCT	1 cut(s)	537
StyI	CCWWGG	2 cut(s)	720, 798
TaaI	ACNGT	5 cut(s)	14, 388, 608, 657, 854
TasI	AATT	5 cut(s)	124, 379, 708, 741, 906
TatI	WGTACW	2 cut(s)	43, 112
TauI	GCSGC	1 cut(s)	681
TfiI	GAWTC	3 cut(s)	325, 394, 778
Tru1I	TTAA	4 cut(s)	189, 567, 645, 668
Tru9I	TTAA	4 cut(s)	189, 567, 645, 668
TscAI	CASTG	4 cut(s)	17, 327, 662, 811
TseFI	GTSAC	2 cut(s)	8, 23
TseI	GCWGC	2 cut(s)	725, 838
Tsp45I	GTSAC	2 cut(s)	8, 23
TspDTI	ATGAA	3 cut(s)	417, 612, 755
TspGWI	ACGGA	4 cut(s)	104, 341, 753, 781
TspRI	CASTG	4 cut(s)	17, 327, 662, 811
VpaK11BI	GGWCC	1 cut(s)	331
XapI	RAATTY	4 cut(s)	124, 708, 741, 906
XmnI	GAANNNNTTC	1 cut(s)	145
ZrmI	AGTACT	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.