Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0008119

Physical Location & Seq

Genomic Coordinates Reverse (-)

48751559 .. 48752803

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG290800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGTGGAAAGTACTGAGGAGAAATTTCAAGATGGGGAGAAGTGCTTCCATGCCAGTTATAAAAGTATCTTTGGCTCTGCCTCAACTTAATCAAGTTCCACCTCTTGATATTATTAGATTGGCACCCAACTCTATTCCACAGACTCAGGTCTGTAGGCCAACTACGACCCATGCTGTGTTCTCCACCAGCCCTACTTTGCCAGCACCTACCTCTATACCACTGAATCAGGTCCCGAGGTCAACTTTGATCCGTGCTCCCCCCTCAACCACCCTTATCAATTCTACTGTCAGGAATCAAGGTAGAAGCCACCAACCAAGATTTCTTTCATCCAAGAATGGAGTCCAACCAGCTTCTGTCCAACCATCTTCAGGTTCTCAGCAGTTGCATAGTAATGCTGTAAGGAGTAGCAGAGCTCAGAATATTGGTAATGGAGGCCTTCACTCTACCTCTTCACCGACAATGTTTAAAAGATCAGGGCCTGTTCGGATTTCTTTGGGAAGGAACCGTTCTGCATATGGTTCATCATATAACAGCAATCATGTTAATCCATCACAGTGTGGTTCGTTAAATAACAGCGGCTGTGCCAATCCATCACAAAATGGCAGAATTCCCTCCCCCATGGCAGCATCACATGACGGAATTCGCTTCAGTTGGCAGGGGGTTCATAACAGCTTGAATCGGATCCCCTCCGTGCCCATGGGCAGTGGCATTGTTGGAAGTGCATTGCCTCCCCAGCAGCCCCAAACATACAGTCAACCTTTTGCTGAGTCGGCATATAGCCAAAATGTTCAGCAAGGGAGTCAAATTCAAAATGATGCCCAAAATATCTATCAATATGGGATTGAAAGTCAAAATGCAAGCCAGAACGTCTCTCTGCAAGGCATAGGTCCAAGTGCTGTGGACTTGGGGTTTTCAGATTGCAACTACAGTTGGATGAACAACACCAGTCAAAGCATTCAGCAACCTCAACCTCCCATTGGAAATTCTCAAGTTCAAAGCACCGAGGCTATATATGGGCCATCTCCAGTCAAGGAACCTGATTTCCAGTCCAACGGATACCCTAATTTCCAGGGGTTGGAAAGTGATTTCGAGAACTGGCTACTGGACAATCAGCCAACTCCACCACTAACAAATGATTATGTGCCTTCTCAACTGGATCTCTTGTCTCCAGGGCCTGCTCTTGCTGACGCGGGGATGCTTCTGTTTGATTTTGAAACCTCTCTCAACAGTCTCACACAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD

Protein Analysis

414

Amino Acids

44.57

Weight (kDa)

9.25

Isoelectric Point (pI)

58.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008119)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20270 FvH4_2g20270 FvH4_2g20270 FvH4_2g20270
malus_domestica	MD05G1186600.v1.1 MD10G1174400.v1.1 MD10G1174600.v1.1
prunus_persica	Prupe.8G213400_v2.0.a1
pyrus_communis	pycom05g17080 pycom10g15040
rosa_chinensis	RchiOBHm_Chr6g0286061
rosa_laevigata	RLG00000012585
rosa_multiflora	Rmu_co8125756.1_g000001 Rmu_co8336629.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182490
rosa_rugosa	Rorug06G0178700
rosa_samantha	Rh6AG290800 Rh6AG290900 Rh6BG294200 Rh6CG293700 Rh6CG293800 Rh6DG285800 Rh6DG285900
rosa_wichuraiana	Rw6G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	121
AccB7I	CCANNNNNTGG	1 cut(s)	1075
AccII	CGCG	1 cut(s)	1190
AciI	CCGC	2 cut(s)	576, 1190
AclWI	GGATC	4 cut(s)	241, 676, 689, 1164
AcsI	RAATTY	5 cut(s)	22, 606, 639, 804, 982
AcuI	CTGAAG	2 cut(s)	351, 631
AdeI	CACNNNGTG	1 cut(s)	557
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	3 cut(s)	368, 977, 1075
AgsI	TTSAA	6 cut(s)	28, 676, 809, 845, 995, 1214
AjnI	CCWGG	2 cut(s)	1068, 1168
AjuI	GAANNNNNNNTTGG	4 cut(s)	303, 307, 335, 339
AleI	CACNNNNGTG	1 cut(s)	1238
AloI	GAACNNNNNNTCC	2 cut(s)	1026, 1058
AluBI	AGCT	3 cut(s)	350, 413, 672
AluI	AGCT	3 cut(s)	350, 413, 672
Alw21I	GWGCWC	2 cut(s)	256, 415
Alw26I	GTCTC	3 cut(s)	874, 1170, 1235
AlwI	GGATC	4 cut(s)	241, 676, 689, 1164
AlwNI	CAGNNNCTG	4 cut(s)	353, 479, 579, 1175
Ama87I	CYCGRG	1 cut(s)	232
AoxI	GGCC	5 cut(s)	155, 433, 476, 1016, 1172
ApeKI	GCWGC	2 cut(s)	623, 736
ApoI	RAATTY	5 cut(s)	22, 606, 639, 804, 982
ArsI	GACNNNNNNTTYG	2 cut(s)	736, 768
Asp700I	GAANNNNTTC	1 cut(s)	43
AspS9I	GGNCC	5 cut(s)	229, 476, 887, 1016, 1172
AsuHPI	GGTGA	1 cut(s)	444
AvaI	CYCGRG	1 cut(s)	232
AvaII	GGWCC	2 cut(s)	229, 887
BaeGI	GKGCMC	1 cut(s)	696
BamHI	GGATCC	1 cut(s)	681
BanI	GGYRCC	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	415
Bbv12I	GWGCWC	2 cut(s)	256, 415
BbvI	GCAGC	2 cut(s)	635, 748
BccI	CCATC	5 cut(s)	25, 370, 556, 598, 1027
BciT130I	CCWGG	2 cut(s)	1070, 1170
BciVI	GTATCC	1 cut(s)	1049
BcoDI	GTCTC	3 cut(s)	874, 1170, 1235
BfmI	CTRYAG	2 cut(s)	151, 925
BfuI	GTATCC	1 cut(s)	1049
BisI	GCNGC	3 cut(s)	577, 624, 737
BlsI	GCNGC	3 cut(s)	578, 625, 738
BmcAI	AGTACT	1 cut(s)	12
Bme1390I	CCNGG	2 cut(s)	1070, 1170
Bme18I	GGWCC	2 cut(s)	229, 887
BmeT110I	CYCGRG	1 cut(s)	232
BmgT120I	GGNCC	5 cut(s)	229, 476, 887, 1016, 1172
BmiI	GGNNCC	5 cut(s)	123, 231, 503, 683, 1035
BmrFI	CCNGG	2 cut(s)	1070, 1170
BmsI	GCATC	3 cut(s)	635, 805, 1185
BoxI	GACNNNNGTC	1 cut(s)	146
BpmI	CTGGAG	2 cut(s)	1008, 1152
BpuEI	CTTGAG	1 cut(s)	972
BsaJI	CCNNGG	6 cut(s)	233, 618, 696, 1002, 1069, 1169
Bsc4I	CCNNNNNNNGG	3 cut(s)	368, 977, 1075
Bse1I	ACTGG	7 cut(s)	53, 945, 1025, 1045, 1100, 1107, 1158
Bse3DI	GCAATG	1 cut(s)	722
BseBI	CCWGG	2 cut(s)	1070, 1170
BseDI	CCNNGG	6 cut(s)	233, 618, 696, 1002, 1069, 1169
BseGI	GGATG	3 cut(s)	326, 939, 1200
BseLI	CCNNNNNNNGG	3 cut(s)	368, 977, 1075
BseMI	GCAATG	1 cut(s)	722
BseMII	CTCAG	5 cut(s)	5, 158, 389, 428, 756
BseNI	ACTGG	7 cut(s)	53, 945, 1025, 1045, 1100, 1107, 1158
BseRI	GAGGAG	1 cut(s)	31
BseSI	GKGCMC	1 cut(s)	696
BseXI	GCAGC	2 cut(s)	635, 748
BseYI	CCCAGC	1 cut(s)	732
Bsh1236I	CGCG	1 cut(s)	1190
BshFI	GGCC	5 cut(s)	157, 435, 478, 1018, 1174
BshNI	GGYRCC	1 cut(s)	121
BsiHKAI	GWGCWC	2 cut(s)	256, 415
BsiHKCI	CYCGRG	1 cut(s)	232
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	3 cut(s)	368, 977, 1075
BsmAI	GTCTC	3 cut(s)	874, 1170, 1235
BsmBI	CGTCTC	1 cut(s)	874
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	954
BsnI	GGCC	5 cut(s)	157, 435, 478, 1018, 1174
BsoBI	CYCGRG	1 cut(s)	232
Bsp1286I	GDGCHC	3 cut(s)	256, 415, 696
Bsp143I	GATC	4 cut(s)	246, 470, 681, 1156
Bsp19I	CCATGG	2 cut(s)	618, 696
BspACI	CCGC	2 cut(s)	576, 1190
BspANI	GGCC	5 cut(s)	157, 435, 478, 1018, 1174
BspCNI	CTCAG	5 cut(s)	6, 157, 388, 427, 757
BspFNI	CGCG	1 cut(s)	1190
BspLI	GGNNCC	5 cut(s)	123, 231, 503, 683, 1035
BspPI	GGATC	4 cut(s)	241, 676, 689, 1164
BspT107I	GGYRCC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	722
BsrI	ACTGG	7 cut(s)	53, 945, 1025, 1045, 1100, 1107, 1158
BssECI	CCNNGG	6 cut(s)	233, 618, 696, 1002, 1069, 1169
BssMI	GATC	4 cut(s)	246, 470, 681, 1156
BssT1I	CCWWGG	2 cut(s)	618, 696
Bst2UI	CCWGG	2 cut(s)	1070, 1170
Bst4CI	ACNGT	6 cut(s)	286, 506, 555, 752, 929, 1229
Bst6I	CTCTTC	1 cut(s)	454
BstC8I	GCNNGC	3 cut(s)	201, 859, 1176
BstDEI	CTNAG	5 cut(s)	14, 144, 375, 414, 765
BstDSI	CCRYGG	2 cut(s)	618, 696
BstF5I	GGATG	3 cut(s)	326, 939, 1200
BstFNI	CGCG	1 cut(s)	1190
BstKTI	GATC	4 cut(s)	249, 473, 684, 1159
BstMAI	GTCTC	3 cut(s)	874, 1170, 1235
BstMBI	GATC	4 cut(s)	246, 470, 681, 1156
BstMWI	GCNNNNNNNGC	2 cut(s)	733, 770
BstNI	CCWGG	2 cut(s)	1070, 1170
BstPAI	GACNNNNGTC	1 cut(s)	146
BstSCI	CCNGG	2 cut(s)	1068, 1168
BstSFI	CTRYAG	2 cut(s)	151, 925
BstSLI	GKGCMC	1 cut(s)	696
BstUI	CGCG	1 cut(s)	1190
BstV1I	GCAGC	2 cut(s)	635, 748
BstX2I	RGATCY	2 cut(s)	681, 1156
BstYI	RGATCY	2 cut(s)	681, 1156
BsuI	GTATCC	1 cut(s)	1049
BsuRI	GGCC	5 cut(s)	157, 435, 478, 1018, 1174
BtgI	CCRYGG	2 cut(s)	618, 696
BtsCI	GGATG	3 cut(s)	326, 939, 1200
BtsI	GCAGTG	1 cut(s)	709
BtsIMutI	CAGTG	3 cut(s)	218, 560, 709
Cac8I	GCNNGC	3 cut(s)	201, 859, 1176
CaiI	CAGNNNCTG	4 cut(s)	353, 479, 579, 1175
Cfr13I	GGNCC	5 cut(s)	229, 476, 887, 1016, 1172
CseI	GACGC	1 cut(s)	1196
Csp6I	GTAC	1 cut(s)	11
CspCI	CAANNNNNGTGG	2 cut(s)	879, 914
CviAII	CATG	6 cut(s)	49, 170, 539, 619, 632, 697
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	5 cut(s)	14, 144, 375, 414, 765
DpnI	GATC	4 cut(s)	248, 472, 683, 1158
DpnII	GATC	4 cut(s)	246, 470, 681, 1156
DraI	TTTAAA	1 cut(s)	466
DraIII	CACNNNGTG	1 cut(s)	557
Eam1104I	CTCTTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	454
Ecl136II	GAGCTC	1 cut(s)	413
Eco130I	CCWWGG	2 cut(s)	618, 696
Eco147I	AGGCCT	1 cut(s)	435
Eco24I	GRGCYC	1 cut(s)	415
Eco47I	GGWCC	2 cut(s)	229, 887
Eco53kI	GAGCTC	1 cut(s)	413
Eco57I	CTGAAG	2 cut(s)	351, 631
Eco88I	CYCGRG	1 cut(s)	232
EcoICRI	GAGCTC	1 cut(s)	413
EcoO109I	RGGNCCY	3 cut(s)	229, 476, 1172
EcoRI	GAATTC	2 cut(s)	606, 639
EcoRII	CCWGG	2 cut(s)	1068, 1168
EcoT14I	CCWWGG	2 cut(s)	618, 696
EcoT38I	GRGCYC	1 cut(s)	415
ErhI	CCWWGG	2 cut(s)	618, 696
Esp3I	CGTCTC	1 cut(s)	874
FaeI	CATG	6 cut(s)	52, 173, 542, 622, 635, 700
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	6 cut(s)	48, 169, 538, 618, 631, 696
FauI	CCCGC	1 cut(s)	1183
FauNDI	CATATG	1 cut(s)	514
Fnu4HI	GCNGC	3 cut(s)	577, 624, 737
FokI	GGATG	3 cut(s)	313, 946, 1207
FriOI	GRGCYC	1 cut(s)	415
Fsp4HI	GCNGC	3 cut(s)	577, 624, 737
GluI	GCNGC	3 cut(s)	577, 624, 737
GsaI	CCCAGC	1 cut(s)	736
GsuI	CTGGAG	2 cut(s)	1008, 1152
HaeIII	GGCC	5 cut(s)	157, 435, 478, 1018, 1174
HgaI	GACGC	1 cut(s)	1196
Hin1II	CATG	6 cut(s)	52, 173, 542, 622, 635, 700
HincII	GTYRAC	2 cut(s)	240, 755
HindII	GTYRAC	2 cut(s)	240, 755
HinfI	GANTC	7 cut(s)	142, 223, 292, 339, 676, 767, 799
HphI	GGTGA	1 cut(s)	444
Hpy166II	GTNNAC	3 cut(s)	240, 755, 901
Hpy188I	TCNGA	4 cut(s)	417, 486, 681, 916
Hpy188III	TCNNGA	5 cut(s)	28, 104, 232, 289, 1090
Hpy8I	GTNNAC	3 cut(s)	240, 755, 901
HpyAV	CCTTC	3 cut(s)	446, 492, 1155
HpyCH4III	ACNGT	6 cut(s)	286, 506, 555, 752, 929, 1229
HpyCH4IV	ACGT	1 cut(s)	867
HpyCH4V	TGCA	6 cut(s)	385, 512, 722, 857, 877, 921
HpyF10VI	GCNNNNNNNGC	2 cut(s)	733, 770
HpyF3I	CTNAG	5 cut(s)	14, 144, 375, 414, 765
HpySE526I	ACGT	1 cut(s)	867
Hsp92II	CATG	6 cut(s)	52, 173, 542, 622, 635, 700
Kzo9I	GATC	4 cut(s)	246, 470, 681, 1156
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	2 cut(s)	635, 748
LweI	GCATC	3 cut(s)	635, 805, 1185
MaeII	ACGT	1 cut(s)	867
MalI	GATC	4 cut(s)	248, 472, 683, 1158
MboI	GATC	4 cut(s)	246, 470, 681, 1156
MboII	GAAGA	2 cut(s)	357, 441
MflI	RGATCY	2 cut(s)	681, 1156
MhlI	GDGCHC	3 cut(s)	256, 415, 696
MluCI	AATT	7 cut(s)	22, 277, 606, 639, 804, 982, 1063
MlyI	GAGTC	4 cut(s)	136, 348, 776, 808
MmeI	TCCRAC	6 cut(s)	367, 382, 694, 911, 1056, 1074
MroXI	GAANNNNTTC	1 cut(s)	43
MseI	TTAA	4 cut(s)	87, 465, 543, 566
MslI	CAYNNNNRTG	3 cut(s)	390, 553, 1238
MspA1I	CMGCKG	1 cut(s)	576
MspR9I	CCNGG	2 cut(s)	1070, 1170
Mva1269I	GAATGC	1 cut(s)	954
MvaI	CCWGG	2 cut(s)	1070, 1170
MvnI	CGCG	1 cut(s)	1190
MwoI	GCNNNNNNNGC	2 cut(s)	733, 770
NcoI	CCATGG	2 cut(s)	618, 696
NdeI	CATATG	1 cut(s)	514
NdeII	GATC	4 cut(s)	246, 470, 681, 1156
NlaIII	CATG	6 cut(s)	52, 173, 542, 622, 635, 700
NlaIV	GGNNCC	5 cut(s)	123, 231, 503, 683, 1035
OliI	CACNNNNGTG	1 cut(s)	1238
PceI	AGGCCT	1 cut(s)	435
PctI	GAATGC	1 cut(s)	954
PdmI	GAANNNNTTC	1 cut(s)	43
PfeI	GAWTC	3 cut(s)	223, 292, 676
PflMI	CCANNNNNTGG	1 cut(s)	1075
PkrI	GCNGC	3 cut(s)	578, 625, 738
PleI	GAGTC	4 cut(s)	136, 347, 775, 807
PpsI	GAGTC	4 cut(s)	136, 347, 775, 807
PpuMI	RGGWCCY	1 cut(s)	229
PshAI	GACNNNNGTC	1 cut(s)	146
PsiI	TTATAA	1 cut(s)	59
Psp124BI	GAGCTC	1 cut(s)	415
Psp5II	RGGWCCY	1 cut(s)	229
Psp6I	CCWGG	2 cut(s)	1068, 1168
PspFI	CCCAGC	1 cut(s)	732
PspGI	CCWGG	2 cut(s)	1068, 1168
PspN4I	GGNNCC	5 cut(s)	123, 231, 503, 683, 1035
PspPI	GGNCC	5 cut(s)	229, 476, 887, 1016, 1172
PspPPI	RGGWCCY	1 cut(s)	229
PstNI	CAGNNNCTG	4 cut(s)	353, 479, 579, 1175
PsuI	RGATCY	2 cut(s)	681, 1156
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
RseI	CAYNNNNRTG	3 cut(s)	390, 553, 1238
SacI	GAGCTC	1 cut(s)	415
SaqAI	TTAA	4 cut(s)	87, 465, 543, 566
SatI	GCNGC	3 cut(s)	577, 624, 737
Sau3AI	GATC	4 cut(s)	246, 470, 681, 1156
Sau96I	GGNCC	5 cut(s)	229, 476, 887, 1016, 1172
ScaI	AGTACT	1 cut(s)	12
SchI	GAGTC	4 cut(s)	136, 348, 776, 808
ScrFI	CCNGG	2 cut(s)	1070, 1170
SduI	GDGCHC	3 cut(s)	256, 415, 696
SfaNI	GCATC	3 cut(s)	635, 805, 1185
SfcI	CTRYAG	2 cut(s)	151, 925
SinI	GGWCC	2 cut(s)	229, 887
SmiMI	CAYNNNNRTG	3 cut(s)	390, 553, 1238
SmlI	CTYRAG	1 cut(s)	987
SmoI	CTYRAG	1 cut(s)	987
Sse9I	AATT	7 cut(s)	22, 277, 606, 639, 804, 982, 1063
SseBI	AGGCCT	1 cut(s)	435
SsiI	CCGC	2 cut(s)	576, 1190
SspI	AATATT	1 cut(s)	421
SstI	GAGCTC	1 cut(s)	415
StuI	AGGCCT	1 cut(s)	435
StyD4I	CCNGG	2 cut(s)	1068, 1168
StyI	CCWWGG	2 cut(s)	618, 696
TaaI	ACNGT	6 cut(s)	286, 506, 555, 752, 929, 1229
TaiI	ACGT	1 cut(s)	870
TaqI	TCGA	1 cut(s)	1089
TasI	AATT	7 cut(s)	22, 277, 606, 639, 804, 982, 1063
TatI	WGTACW	1 cut(s)	10
TauI	GCSGC	1 cut(s)	579
TfiI	GAWTC	3 cut(s)	223, 292, 676
Tru1I	TTAA	4 cut(s)	87, 465, 543, 566
Tru9I	TTAA	4 cut(s)	87, 465, 543, 566
TscAI	CASTG	3 cut(s)	225, 560, 709
TseI	GCWGC	2 cut(s)	623, 736
TspDTI	ATGAA	4 cut(s)	315, 510, 653, 950
TspGWI	ACGGA	4 cut(s)	239, 651, 679, 1068
TspRI	CASTG	3 cut(s)	225, 560, 709
Van91I	CCANNNNNTGG	1 cut(s)	1075
VpaK11BI	GGWCC	2 cut(s)	229, 887
XapI	RAATTY	5 cut(s)	22, 606, 639, 804, 982
XmnI	GAANNNNTTC	1 cut(s)	43
ZrmI	AGTACT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.