RLG00000012585

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0008119
Physical Location & Seq
Forward (+)
20254086 .. 20256337
2252 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012585

Sequence Viewer

Length: 1368 bp
ATGCAGTGTCACTGTTATGTCTGTGACTCTTTGGCACCCTGTGTACATTGGCGCATTGGCACTTCACATATTGGCATTGGCGCTTCGCATATTGGCCATTGTCATGCTACGGAGAAAGTAGAGATGTGGAAAGTACTGAGGAGAAATTTCAAGATGGGGAGAAGTGCTTCCATGCCAGCTATAAAAGTATCTTTGGCTCTGCCTCAACTTAATCAAGTTCCACCTCTTGATATTATTAGATTGGCACCCAACTCTATTCCACAGACTCAGGTCTGTAGGCCAACTACGACCCATGCTGTCTCCTCCGCCAGCCCTACTATGCCAGCATCTACCTCTATACCACTGAATCAGGTCCCGAGGTCAACTTTGATCCGTGCTCCCCCCTCAACCACCCTTATCAATTCTACTGTAAGGAATCAAGGTGGAAGCCACCAACCAAGATTTCTTTCATCCAAGAATGGAGTCCATCCAGCTTCTGTCCGACCATCTTCAGCTTCTCAGCAGTTGCATAGTAATGCTGTAAGGAGTAGCAGAGCTCAGAATATTGGTAATGGAGGCCTTCACTCTACCTCTTCACCGACAATGTTTAAAAGAGCAGGGCCTGTTCGGATTTCTTTGGGAAGGAACCATTCTGCATATGGTTCATCATATAACAGCAATCATGTTAATCCATCAGAGTGTGGTTCGTTAAATAACAGCGGCTGTGCCAATCCATCACAATATGGCAGAATTCCCTCCCCCATGGCAGCATCACATGACGGAATTCGCTTCAGTTGGCAGGAGGTTCATAACAGCTTGAATCGGATCCCCTCCGTCCCCATGGGCAGTGGCATTGTTGGAAGTGCATTGCCTCCCCAGCAGCCCCAAACATACAGCCAACCTTTTGCTCAGTCAGCATATAGCCAAAATGTTCAGCAAGGGAGTCAAATTCAAAATGATGCCCAAAATATCTATCAATATGGGATTGAAAGTCAAAATGCAAGCCAGAACGTCTCTCTGCAAGGCATAGGTCCAAGTGCTGTGGACTTGGGGTTTTCAGATTGCAACTACAGTTGGATGAACAACACCAGTCAAAGCATTCAGCAACCTCAACCTCCCATTGGAAATTCTCAAGTTCAAAGCACCGAGGCAATATATGAGCCATCTCCAGTCAAGGAACCTGATTTCCAGTCCAACGGATACCCTAATTTCCAGGGGTTGGAAAGTGATTTCGAGAACTGGCTACTGGACAATCAGCCAACTCCACCAGTAACAAATGATTATGTGCCTTCTCAACTGGATCTCTTGTCTCCAGGGCCTGCTCTTGCTGACGCTGGGATGCTTCTGTTTGATTTTGAAACCTCTCTCAACAGTCTCACACAGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CSD

Protein Analysis

456

Amino Acids

49.03

Weight (kDa)

8.08

Isoelectric Point (pI)

57.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 34, 244
AccB7I CCANNNNNTGG 1 cut(s) 1198
AciI CCGC 2 cut(s) 306, 699
AclWI GGATC 4 cut(s) 364, 799, 812, 1287
AcoI YGGCCR 1 cut(s) 94
AcsI RAATTY 5 cut(s) 145, 729, 762, 927, 1105
AcuI CTGAAG 2 cut(s) 474, 754
AdeI CACNNNGTG 1 cut(s) 41
AfaI GTAC 2 cut(s) 45, 135
AfiI CCNNNNNNNGG 2 cut(s) 1100, 1198
AgsI TTSAA 6 cut(s) 151, 799, 932, 968, 1118, 1337
AjnI CCWGG 2 cut(s) 1191, 1291
AjuI GAANNNNNNNTTGG 4 cut(s) 426, 430, 458, 462
AleI CACNNNNGTG 1 cut(s) 1361
AloI GAACNNNNNNTCC 2 cut(s) 1149, 1181
AluBI AGCT 5 cut(s) 179, 473, 494, 536, 795
AluI AGCT 5 cut(s) 179, 473, 494, 536, 795
Alw21I GWGCWC 2 cut(s) 379, 538
Alw26I GTCTC 4 cut(s) 304, 997, 1293, 1358
AlwI GGATC 4 cut(s) 364, 799, 812, 1287
AlwNI CAGNNNCTG 4 cut(s) 476, 602, 702, 1298
Ama87I CYCGRG 1 cut(s) 355
AoxI GGCC 5 cut(s) 94, 278, 556, 599, 1295
ApeKI GCWGC 2 cut(s) 746, 859
ApoI RAATTY 5 cut(s) 145, 729, 762, 927, 1105
Asp700I GAANNNNTTC 1 cut(s) 166
AspLEI GCGC 2 cut(s) 54, 83
AspS9I GGNCC 4 cut(s) 352, 599, 1010, 1295
AsuHPI GGTGA 1 cut(s) 567
AvaI CYCGRG 1 cut(s) 355
AvaII GGWCC 2 cut(s) 352, 1010
BalI TGGCCA 1 cut(s) 96
BamHI GGATCC 1 cut(s) 804
BanI GGYRCC 2 cut(s) 34, 244
BanII GRGCYC 1 cut(s) 538
Bbv12I GWGCWC 2 cut(s) 379, 538
BbvI GCAGC 2 cut(s) 758, 871
BccI CCATC 6 cut(s) 148, 474, 493, 679, 721, 1150
BciT130I CCWGG 2 cut(s) 1193, 1293
BciVI GTATCC 1 cut(s) 1172
BcoDI GTCTC 4 cut(s) 304, 997, 1293, 1358
BfmI CTRYAG 2 cut(s) 274, 1048
BfoI RGCGCY 1 cut(s) 84
BfuI GTATCC 1 cut(s) 1172
BisI GCNGC 3 cut(s) 700, 747, 860
BlsI GCNGC 3 cut(s) 701, 748, 861
BmcAI AGTACT 1 cut(s) 135
Bme1390I CCNGG 2 cut(s) 1193, 1293
Bme18I GGWCC 2 cut(s) 352, 1010
BmeT110I CYCGRG 1 cut(s) 355
BmgT120I GGNCC 4 cut(s) 352, 599, 1010, 1295
BmiI GGNNCC 6 cut(s) 36, 246, 354, 626, 806, 1158
BmrFI CCNGG 2 cut(s) 1193, 1293
BmsI GCATC 4 cut(s) 335, 758, 928, 1308
BoxI GACNNNNGTC 1 cut(s) 269
BpmI CTGGAG 2 cut(s) 1131, 1275
BpuEI CTTGAG 1 cut(s) 1095
BsaJI CCNNGG 6 cut(s) 356, 741, 819, 1125, 1192, 1292
Bsc4I CCNNNNNNNGG 2 cut(s) 1100, 1198
Bse1I ACTGG 7 cut(s) 1068, 1148, 1168, 1223, 1230, 1247, 1281
Bse3DI GCAATG 1 cut(s) 845
BseBI CCWGG 2 cut(s) 1193, 1293
BseDI CCNNGG 6 cut(s) 356, 741, 819, 1125, 1192, 1292
BseGI GGATG 4 cut(s) 449, 466, 1062, 1323
BseLI CCNNNNNNNGG 2 cut(s) 1100, 1198
BseMI GCAATG 1 cut(s) 845
BseMII CTCAG 5 cut(s) 128, 281, 512, 551, 902
BseNI ACTGG 7 cut(s) 1068, 1148, 1168, 1223, 1230, 1247, 1281
BseRI GAGGAG 2 cut(s) 154, 292
BseXI GCAGC 2 cut(s) 758, 871
BseYI CCCAGC 2 cut(s) 855, 1313
BshFI GGCC 5 cut(s) 96, 280, 558, 601, 1297
BshNI GGYRCC 2 cut(s) 34, 244
BsiHKAI GWGCWC 2 cut(s) 379, 538
BsiHKCI CYCGRG 1 cut(s) 355
BslFI GGGAC 2 cut(s) 338, 800
BslI CCNNNNNNNGG 2 cut(s) 1100, 1198
BsmAI GTCTC 4 cut(s) 304, 997, 1293, 1358
BsmBI CGTCTC 1 cut(s) 997
BsmFI GGGAC 2 cut(s) 338, 800
BsmI GAATGC 1 cut(s) 1077
BsnI GGCC 5 cut(s) 96, 280, 558, 601, 1297
BsoBI CYCGRG 1 cut(s) 355
Bsp1286I GDGCHC 2 cut(s) 379, 538
Bsp1407I TGTACA 1 cut(s) 43
Bsp143I GATC 3 cut(s) 369, 804, 1279
Bsp19I CCATGG 2 cut(s) 741, 819
BspACI CCGC 2 cut(s) 306, 699
BspANI GGCC 5 cut(s) 96, 280, 558, 601, 1297
BspCNI CTCAG 5 cut(s) 129, 280, 511, 550, 901
BspLI GGNNCC 6 cut(s) 36, 246, 354, 626, 806, 1158
BspPI GGATC 4 cut(s) 364, 799, 812, 1287
BspT107I GGYRCC 2 cut(s) 34, 244
BsrDI GCAATG 1 cut(s) 845
BsrGI TGTACA 1 cut(s) 43
BsrI ACTGG 7 cut(s) 1068, 1148, 1168, 1223, 1230, 1247, 1281
BssECI CCNNGG 6 cut(s) 356, 741, 819, 1125, 1192, 1292
BssMI GATC 3 cut(s) 369, 804, 1279
BssT1I CCWWGG 2 cut(s) 741, 819
Bst2UI CCWGG 2 cut(s) 1193, 1293
Bst4CI ACNGT 4 cut(s) 14, 409, 1052, 1352
Bst6I CTCTTC 1 cut(s) 577
BstAUI TGTACA 1 cut(s) 43
BstC8I GCNNGC 5 cut(s) 177, 310, 324, 982, 1299
BstDEI CTNAG 5 cut(s) 137, 267, 498, 537, 888
BstDSI CCRYGG 2 cut(s) 741, 819
BstF5I GGATG 4 cut(s) 449, 466, 1062, 1323
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 2 cut(s) 54, 83
BstKTI GATC 3 cut(s) 372, 807, 1282
BstMAI GTCTC 4 cut(s) 304, 997, 1293, 1358
BstMBI GATC 3 cut(s) 369, 804, 1279
BstMWI GCNNNNNNNGC 2 cut(s) 856, 893
BstNI CCWGG 2 cut(s) 1193, 1293
BstPAI GACNNNNGTC 1 cut(s) 269
BstSCI CCNGG 2 cut(s) 1191, 1291
BstSFI CTRYAG 2 cut(s) 274, 1048
BstV1I GCAGC 2 cut(s) 758, 871
BstX2I RGATCY 2 cut(s) 804, 1279
BstYI RGATCY 2 cut(s) 804, 1279
BsuI GTATCC 1 cut(s) 1172
BsuRI GGCC 5 cut(s) 96, 280, 558, 601, 1297
BtgI CCRYGG 2 cut(s) 741, 819
BtsCI GGATG 4 cut(s) 449, 466, 1062, 1323
BtsI GCAGTG 2 cut(s) 11, 832
BtsIMutI CAGTG 4 cut(s) 10, 11, 341, 832
Cac8I GCNNGC 5 cut(s) 177, 310, 324, 982, 1299
CaiI CAGNNNCTG 4 cut(s) 476, 602, 702, 1298
CfoI GCGC 2 cut(s) 54, 83
Cfr13I GGNCC 4 cut(s) 352, 599, 1010, 1295
CseI GACGC 1 cut(s) 1319
Csp6I GTAC 2 cut(s) 44, 134
CspCI CAANNNNNGTGG 2 cut(s) 1002, 1037
CviAII CATG 7 cut(s) 104, 172, 293, 662, 742, 755, 820
CviQI GTAC 2 cut(s) 44, 134
DdeI CTNAG 5 cut(s) 137, 267, 498, 537, 888
DpnI GATC 3 cut(s) 371, 806, 1281
DpnII GATC 3 cut(s) 369, 804, 1279
DraI TTTAAA 1 cut(s) 589
DraIII CACNNNGTG 1 cut(s) 41
EaeI YGGCCR 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 577
EarI CTCTTC 1 cut(s) 577
EciI GGCGGA 1 cut(s) 295
Ecl136II GAGCTC 1 cut(s) 536
Eco130I CCWWGG 2 cut(s) 741, 819
Eco147I AGGCCT 1 cut(s) 558
Eco24I GRGCYC 1 cut(s) 538
Eco47I GGWCC 2 cut(s) 352, 1010
Eco53kI GAGCTC 1 cut(s) 536
Eco57I CTGAAG 2 cut(s) 474, 754
Eco88I CYCGRG 1 cut(s) 355
EcoICRI GAGCTC 1 cut(s) 536
EcoO109I RGGNCCY 3 cut(s) 352, 599, 1295
EcoRI GAATTC 2 cut(s) 729, 762
EcoRII CCWGG 2 cut(s) 1191, 1291
EcoT14I CCWWGG 2 cut(s) 741, 819
EcoT38I GRGCYC 1 cut(s) 538
ErhI CCWWGG 2 cut(s) 741, 819
Esp3I CGTCTC 1 cut(s) 997
FaeI CATG 7 cut(s) 107, 175, 296, 665, 745, 758, 823
FaqI GGGAC 2 cut(s) 338, 800
FatI CATG 7 cut(s) 103, 171, 292, 661, 741, 754, 819
FauNDI CATATG 1 cut(s) 637
Fnu4HI GCNGC 3 cut(s) 700, 747, 860
FokI GGATG 4 cut(s) 436, 453, 1069, 1330
FriOI GRGCYC 1 cut(s) 538
Fsp4HI GCNGC 3 cut(s) 700, 747, 860
GlaI GCGC 2 cut(s) 53, 82
GluI GCNGC 3 cut(s) 700, 747, 860
GsaI CCCAGC 2 cut(s) 859, 1317
GsuI CTGGAG 2 cut(s) 1131, 1275
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 5 cut(s) 96, 280, 558, 601, 1297
HgaI GACGC 1 cut(s) 1319
HhaI GCGC 2 cut(s) 54, 83
Hin1II CATG 7 cut(s) 107, 175, 296, 665, 745, 758, 823
Hin6I GCGC 2 cut(s) 52, 81
HinP1I GCGC 2 cut(s) 52, 81
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HinfI GANTC 7 cut(s) 26, 265, 346, 415, 462, 799, 922
HphI GGTGA 1 cut(s) 567
Hpy166II GTNNAC 3 cut(s) 44, 363, 1024
Hpy188I TCNGA 6 cut(s) 482, 540, 609, 676, 804, 1039
Hpy188III TCNNGA 4 cut(s) 151, 227, 355, 1213
Hpy8I GTNNAC 3 cut(s) 44, 363, 1024
HpyAV CCTTC 3 cut(s) 569, 615, 1278
HpyCH4III ACNGT 4 cut(s) 14, 409, 1052, 1352
HpyCH4IV ACGT 1 cut(s) 990
HpyCH4V TGCA 7 cut(s) 4, 508, 635, 845, 980, 1000, 1044
HpyF10VI GCNNNNNNNGC 2 cut(s) 856, 893
HpyF3I CTNAG 5 cut(s) 137, 267, 498, 537, 888
HpySE526I ACGT 1 cut(s) 990
Hsp92II CATG 7 cut(s) 107, 175, 296, 665, 745, 758, 823
HspAI GCGC 2 cut(s) 52, 81
Kzo9I GATC 3 cut(s) 369, 804, 1279
LmnI GCTCC 1 cut(s) 382
Lsp1109I GCAGC 2 cut(s) 758, 871
LweI GCATC 4 cut(s) 335, 758, 928, 1308
MaeII ACGT 1 cut(s) 990
MaeIII GTNAC 3 cut(s) 8, 23, 1249
MalI GATC 3 cut(s) 371, 806, 1281
MboI GATC 3 cut(s) 369, 804, 1279
MboII GAAGA 2 cut(s) 480, 564
MflI RGATCY 2 cut(s) 804, 1279
MhlI GDGCHC 2 cut(s) 379, 538
MlsI TGGCCA 1 cut(s) 96
MluCI AATT 7 cut(s) 145, 400, 729, 762, 927, 1105, 1186
MluNI TGGCCA 1 cut(s) 96
MlyI GAGTC 4 cut(s) 20, 259, 471, 931
MmeI TCCRAC 5 cut(s) 505, 817, 1034, 1179, 1197
Mox20I TGGCCA 1 cut(s) 96
MroXI GAANNNNTTC 1 cut(s) 166
MscI TGGCCA 1 cut(s) 96
MseI TTAA 4 cut(s) 210, 588, 666, 689
MslI CAYNNNNRTG 5 cut(s) 15, 102, 513, 676, 1361
Msp20I TGGCCA 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 699
MspR9I CCNGG 2 cut(s) 1193, 1293
Mva1269I GAATGC 1 cut(s) 1077
MvaI CCWGG 2 cut(s) 1193, 1293
MwoI GCNNNNNNNGC 2 cut(s) 856, 893
NcoI CCATGG 2 cut(s) 741, 819
NdeI CATATG 1 cut(s) 637
NdeII GATC 3 cut(s) 369, 804, 1279
NlaIII CATG 7 cut(s) 107, 175, 296, 665, 745, 758, 823
NlaIV GGNNCC 6 cut(s) 36, 246, 354, 626, 806, 1158
NmuCI GTSAC 2 cut(s) 8, 23
OliI CACNNNNGTG 1 cut(s) 1361
PceI AGGCCT 1 cut(s) 558
PctI GAATGC 1 cut(s) 1077
PdmI GAANNNNTTC 1 cut(s) 166
PfeI GAWTC 3 cut(s) 346, 415, 799
PflMI CCANNNNNTGG 1 cut(s) 1198
PkrI GCNGC 3 cut(s) 701, 748, 861
PleI GAGTC 4 cut(s) 20, 259, 470, 930
PpsI GAGTC 4 cut(s) 20, 259, 470, 930
PpuMI RGGWCCY 1 cut(s) 352
PshAI GACNNNNGTC 1 cut(s) 269
Psp124BI GAGCTC 1 cut(s) 538
Psp5II RGGWCCY 1 cut(s) 352
Psp6I CCWGG 2 cut(s) 1191, 1291
PspFI CCCAGC 2 cut(s) 855, 1313
PspGI CCWGG 2 cut(s) 1191, 1291
PspN4I GGNNCC 6 cut(s) 36, 246, 354, 626, 806, 1158
PspPI GGNCC 4 cut(s) 352, 599, 1010, 1295
PspPPI RGGWCCY 1 cut(s) 352
PstNI CAGNNNCTG 4 cut(s) 476, 602, 702, 1298
PsuI RGATCY 2 cut(s) 804, 1279
RsaI GTAC 2 cut(s) 45, 135
RsaNI GTAC 2 cut(s) 44, 134
RseI CAYNNNNRTG 5 cut(s) 15, 102, 513, 676, 1361
SacI GAGCTC 1 cut(s) 538
SaqAI TTAA 4 cut(s) 210, 588, 666, 689
SatI GCNGC 3 cut(s) 700, 747, 860
Sau3AI GATC 3 cut(s) 369, 804, 1279
Sau96I GGNCC 4 cut(s) 352, 599, 1010, 1295
ScaI AGTACT 1 cut(s) 135
SchI GAGTC 4 cut(s) 20, 259, 471, 931
ScrFI CCNGG 2 cut(s) 1193, 1293
SduI GDGCHC 2 cut(s) 379, 538
SfaNI GCATC 4 cut(s) 335, 758, 928, 1308
SfcI CTRYAG 2 cut(s) 274, 1048
SinI GGWCC 2 cut(s) 352, 1010
SmiMI CAYNNNNRTG 5 cut(s) 15, 102, 513, 676, 1361
SmlI CTYRAG 1 cut(s) 1110
SmoI CTYRAG 1 cut(s) 1110
Sse9I AATT 7 cut(s) 145, 400, 729, 762, 927, 1105, 1186
SseBI AGGCCT 1 cut(s) 558
SsiI CCGC 2 cut(s) 306, 699
SspI AATATT 1 cut(s) 544
SstI GAGCTC 1 cut(s) 538
StuI AGGCCT 1 cut(s) 558
StyD4I CCNGG 2 cut(s) 1191, 1291
StyI CCWWGG 2 cut(s) 741, 819
TaaI ACNGT 4 cut(s) 14, 409, 1052, 1352
TaiI ACGT 1 cut(s) 993
TaqI TCGA 1 cut(s) 1212
TasI AATT 7 cut(s) 145, 400, 729, 762, 927, 1105, 1186
TatI WGTACW 2 cut(s) 43, 133
TauI GCSGC 1 cut(s) 702
TfiI GAWTC 3 cut(s) 346, 415, 799
Tru1I TTAA 4 cut(s) 210, 588, 666, 689
Tru9I TTAA 4 cut(s) 210, 588, 666, 689
TscAI CASTG 3 cut(s) 17, 348, 832
TseFI GTSAC 2 cut(s) 8, 23
TseI GCWGC 2 cut(s) 746, 859
Tsp45I GTSAC 2 cut(s) 8, 23
TspDTI ATGAA 4 cut(s) 438, 633, 776, 1073
TspGWI ACGGA 5 cut(s) 125, 362, 774, 802, 1191
TspRI CASTG 3 cut(s) 17, 348, 832
Van91I CCANNNNNTGG 1 cut(s) 1198
VpaK11BI GGWCC 2 cut(s) 352, 1010
XapI RAATTY 5 cut(s) 145, 729, 762, 927, 1105
XcmI CCANNNNNNNNNTGG 1 cut(s) 635
XmnI GAANNNNTTC 1 cut(s) 166
ZrmI AGTACT 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.