pycom05g17080

rpm1 interacting protein 13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0008119
Physical Location & Seq
Reverse (-)
20334648 .. 20335787
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g17080.1

Sequence Viewer

Length: 1140 bp
ATGCCTGGAATCAGAATTCCAAGCAGAAGTCACCAACCAGAATATCTTTTCCCTAAGAACAAAGTCCAACCTTGTTCAGTTTCTAAGCAGTTGCTTGGTGCACGCACTAATGTTGTTGGGAGGAACAGAGGTCAAAATATTGGTCATTTAGGGCCTGTCTCTTCTCATTCAATGTTCAAAAGAGTAGGAGCTGTTGTGAACCGAACTACATTTGTTTCGTCAAATAACAGTAGTTGTACCACTCCATTAATATACAACAGTACTTCCACTCCCATGGCAACATCAAATGGCGGAAACCCCTTGTGGTTGCAGGGTGTTCATTCTAGTGTGCATCAGAACGCCTCCCAGCCCATGACCACTTTCGTTGGAAATACAGTGCCCTCCCAACCCCAAACATATAGTCAGGCCATCCCCCAATCAATTTACGGCCAAACTTTTCAACAGCAAGGGAATCAAGGTCAAAATGATAGCCAATTTATTTCTCAGTACGCGATACCAAGTCCGGATTCCAGTCAAGGTATATATCAGTATGGGAATCAGAGTCAGAATTCTAGTCTGCAAGGTAATCTAGGTGTAAGTGTCACAGATTTGGATTTTACGGATTGTAACTGGGTTCACACTTCCAGTCCAAACATTCAGCAGCCTCCAATTCAGCAACCTCCTATTCAGCAGCCTCCAATTCAGCAACCTCCTGTTCAGCAGCCTCCGCTTCAGCAGCCTCCATTTCAGCAACCTCCCATCCAGCAACCTCCCATTCAGCAACCTCCTGTTCAGCAGCCTCCAATTCAGCAACCTCCTGTTCAGCAGCCTCCGCTTCAGCCTCCATTTCAGCAACCTCCCATTGAGCAACCTCAGTTTCAGCAGCCGCCTCCTATCCAGCAACAGCCTCCCATTGAACTTTCTGAAATTCAAAGCACCGAGCCTGTATATGAGCCAGCTCCCGTCAATGAGCAGTCTAACAAAGTCGCTAATTTCAATGGTTTGGAATTTGAAAGCTGGCTCTTGGAAACCCAGTATAGTCCAGCAGAATCAAATAATGCGATGGCATCTCATCTGAACATGTTGTCTCCCGAGCCGACTTTTATAGACTCACTCGTGTTTGATTTTGAAACCCCCTGGAATGGTCTGGCTCAGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

380

Amino Acids

41.79

Weight (kDa)

5.26

Isoelectric Point (pI)

81.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Extensin_1 PF02095 209 - 323 3e-19 Extensin-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 491
AccIII TCCGGA 1 cut(s) 502
AciI CCGC 4 cut(s) 291, 707, 812, 866
AcoI YGGCCR 1 cut(s) 427
AcsI RAATTY 4 cut(s) 15, 547, 906, 986
AcuI CTGAAG 2 cut(s) 695, 800
AfaI GTAC 3 cut(s) 238, 262, 488
AfiI CCNNNNNNNGG 1 cut(s) 1121
AflIII ACRYGT 1 cut(s) 1059
AgsI TTSAA 8 cut(s) 171, 178, 440, 896, 911, 976, 992, 1109
AjnI CCWGG 2 cut(s) 4, 1115
AjuI GAANNNNNNNTTGG 2 cut(s) 490, 522
AluBI AGCT 3 cut(s) 191, 938, 996
AluI AGCT 3 cut(s) 191, 938, 996
Alw21I GWGCWC 1 cut(s) 103
Alw26I GTCTC 2 cut(s) 163, 1071
Alw44I GTGCAC 1 cut(s) 99
Ama87I CYCGRG 1 cut(s) 1070
Aor13HI TCCGGA 1 cut(s) 502
AoxI GGCC 3 cut(s) 152, 405, 427
ApaLI GTGCAC 1 cut(s) 99
ApeKI GCWGC 7 cut(s) 640, 670, 700, 715, 775, 805, 862
ApoI RAATTY 4 cut(s) 15, 547, 906, 986
ArsI GACNNNNNNTTYG 4 cut(s) 127, 159, 385, 417
AseI ATTAAT 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 1070
BaeGI GKGCMC 2 cut(s) 103, 381
BauI CACGAG 1 cut(s) 1094
Bbv12I GWGCWC 1 cut(s) 103
BbvI GCAGC 7 cut(s) 652, 682, 712, 727, 787, 817, 874
BccI CCATC 3 cut(s) 416, 746, 1036
BceAI ACGGC 1 cut(s) 442
BciT130I CCWGG 2 cut(s) 6, 1117
BcoDI GTCTC 2 cut(s) 163, 1071
BfaI CTAG 3 cut(s) 324, 552, 569
BisI GCNGC 8 cut(s) 641, 671, 701, 716, 776, 806, 863, 866
BlsI GCNGC 8 cut(s) 642, 672, 702, 717, 777, 807, 864, 867
BmcAI AGTACT 1 cut(s) 262
Bme1390I CCNGG 2 cut(s) 6, 1117
BmeT110I CYCGRG 1 cut(s) 1070
BmgT120I GGNCC 1 cut(s) 152
BmrFI CCNGG 2 cut(s) 6, 1117
BmrI ACTGGG 2 cut(s) 619, 1006
BmsI GCATC 2 cut(s) 340, 1055
BmuI ACTGGG 2 cut(s) 619, 1006
Bpu10I CCTNAGC 1 cut(s) 1131
BsaJI CCNNGG 2 cut(s) 273, 1115
BsaWI WCCGGW 1 cut(s) 502
BsaXI ACNNNNNCTCC 4 cut(s) 180, 210, 253, 283
Bsc4I CCNNNNNNNGG 1 cut(s) 1121
Bse1I ACTGG 4 cut(s) 510, 614, 624, 1012
BseAI TCCGGA 1 cut(s) 502
BseBI CCWGG 2 cut(s) 6, 1117
BseDI CCNNGG 2 cut(s) 273, 1115
BseGI GGATG 2 cut(s) 408, 738
BseLI CCNNNNNNNGG 1 cut(s) 1121
BseMII CTCAG 2 cut(s) 497, 866
BseNI ACTGG 4 cut(s) 510, 614, 624, 1012
BseSI GKGCMC 2 cut(s) 103, 381
BseXI GCAGC 7 cut(s) 652, 682, 712, 727, 787, 817, 874
BseYI CCCAGC 1 cut(s) 345
Bsh1236I CGCG 1 cut(s) 491
BshFI GGCC 3 cut(s) 154, 407, 429
BsiHKAI GWGCWC 1 cut(s) 103
BsiHKCI CYCGRG 1 cut(s) 1070
BsiSI CCGG 1 cut(s) 503
BslI CCNNNNNNNGG 1 cut(s) 1121
BsmAI GTCTC 2 cut(s) 163, 1071
BsnI GGCC 3 cut(s) 154, 407, 429
BsoBI CYCGRG 1 cut(s) 1070
Bsp1286I GDGCHC 2 cut(s) 103, 381
Bsp13I TCCGGA 1 cut(s) 502
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 4 cut(s) 291, 707, 812, 866
BspANI GGCC 3 cut(s) 154, 407, 429
BspCNI CTCAG 2 cut(s) 496, 865
BspEI TCCGGA 1 cut(s) 502
BspFNI CGCG 1 cut(s) 491
BsrI ACTGG 4 cut(s) 510, 614, 624, 1012
BssECI CCNNGG 2 cut(s) 273, 1115
BssSI CACGAG 1 cut(s) 1094
BssT1I CCWWGG 1 cut(s) 273
Bst2BI CACGAG 1 cut(s) 1094
Bst2UI CCWGG 2 cut(s) 6, 1117
Bst4CI ACNGT 3 cut(s) 230, 260, 376
Bst6I CTCTTC 1 cut(s) 166
BstC8I GCNNGC 3 cut(s) 103, 936, 998
BstDEI CTNAG 5 cut(s) 54, 84, 483, 852, 1131
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 2 cut(s) 408, 738
BstFNI CGCG 1 cut(s) 491
BstMAI GTCTC 2 cut(s) 163, 1071
BstMWI GCNNNNNNNGC 3 cut(s) 706, 715, 811
BstNI CCWGG 2 cut(s) 6, 1117
BstNSI RCATGY 1 cut(s) 1063
BstSCI CCNGG 2 cut(s) 4, 1115
BstSLI GKGCMC 2 cut(s) 103, 381
BstUI CGCG 1 cut(s) 491
BstV1I GCAGC 7 cut(s) 652, 682, 712, 727, 787, 817, 874
BstXI CCANNNNNNTGG 1 cut(s) 274
BsuRI GGCC 3 cut(s) 154, 407, 429
BtgI CCRYGG 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 1055
BtsCI GGATG 2 cut(s) 408, 738
BtsIMutI CAGTG 1 cut(s) 381
Cac8I GCNNGC 3 cut(s) 103, 936, 998
Cfr13I GGNCC 1 cut(s) 152
Csp6I GTAC 3 cut(s) 237, 261, 487
CspCI CAANNNNNGTGG 2 cut(s) 346, 381
CviAII CATG 3 cut(s) 274, 352, 1060
CviQI GTAC 3 cut(s) 237, 261, 487
DdeI CTNAG 5 cut(s) 54, 84, 483, 852, 1131
EaeI YGGCCR 1 cut(s) 427
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
EciI GGCGGA 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 273
Eco57I CTGAAG 2 cut(s) 695, 800
Eco88I CYCGRG 1 cut(s) 1070
EcoO109I RGGNCCY 1 cut(s) 152
EcoRI GAATTC 2 cut(s) 15, 547
EcoRII CCWGG 2 cut(s) 4, 1115
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 3 cut(s) 277, 355, 1063
FatI CATG 3 cut(s) 273, 351, 1059
Fnu4HI GCNGC 8 cut(s) 641, 671, 701, 716, 776, 806, 863, 866
FokI GGATG 2 cut(s) 395, 725
Fsp4HI GCNGC 8 cut(s) 641, 671, 701, 716, 776, 806, 863, 866
FspBI CTAG 3 cut(s) 324, 552, 569
GluI GCNGC 8 cut(s) 641, 671, 701, 716, 776, 806, 863, 866
GsaI CCCAGC 1 cut(s) 349
HaeIII GGCC 3 cut(s) 154, 407, 429
HapII CCGG 1 cut(s) 503
Hin1II CATG 3 cut(s) 277, 355, 1063
HinfI GANTC 7 cut(s) 9, 451, 506, 535, 541, 1028, 1088
HpaII CCGG 1 cut(s) 503
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 3 cut(s) 101, 199, 616
Hpy188I TCNGA 6 cut(s) 14, 336, 540, 546, 904, 1056
Hpy188III TCNNGA 2 cut(s) 503, 1070
Hpy8I GTNNAC 3 cut(s) 101, 199, 616
HpyCH4III ACNGT 3 cut(s) 230, 260, 376
HpyCH4V TGCA 4 cut(s) 101, 310, 331, 559
HpyF10VI GCNNNNNNNGC 3 cut(s) 706, 715, 811
HpyF3I CTNAG 5 cut(s) 54, 84, 483, 852, 1131
Hsp92II CATG 3 cut(s) 277, 355, 1063
Kpn2I TCCGGA 1 cut(s) 502
LmnI GCTCC 2 cut(s) 188, 943
Lsp1109I GCAGC 7 cut(s) 652, 682, 712, 727, 787, 817, 874
LweI GCATC 2 cut(s) 340, 1055
MaeI CTAG 3 cut(s) 324, 552, 569
MaeIII GTNAC 3 cut(s) 29, 580, 605
MboII GAAGA 1 cut(s) 153
MhlI GDGCHC 2 cut(s) 103, 381
MlyI GAGTC 2 cut(s) 550, 1082
MmeI TCCRAC 2 cut(s) 91, 346
MroI TCCGGA 1 cut(s) 502
MseI TTAA 1 cut(s) 248
MslI CAYNNNNRTG 2 cut(s) 272, 324
MspI CCGG 1 cut(s) 503
MspR9I CCNGG 2 cut(s) 6, 1117
MvaI CCWGG 2 cut(s) 6, 1117
MvnI CGCG 1 cut(s) 491
MwoI GCNNNNNNNGC 3 cut(s) 706, 715, 811
NcoI CCATGG 1 cut(s) 273
NlaIII CATG 3 cut(s) 277, 355, 1063
NmuCI GTSAC 2 cut(s) 29, 580
NspI RCATGY 1 cut(s) 1063
PciI ACATGT 1 cut(s) 1059
PfeI GAWTC 5 cut(s) 9, 451, 506, 535, 1028
PkrI GCNGC 8 cut(s) 642, 672, 702, 717, 777, 807, 864, 867
PleI GAGTC 2 cut(s) 549, 1082
PpsI GAGTC 2 cut(s) 549, 1082
PscI ACATGT 1 cut(s) 1059
PshBI ATTAAT 1 cut(s) 248
Psp6I CCWGG 2 cut(s) 4, 1115
PspFI CCCAGC 1 cut(s) 345
PspGI CCWGG 2 cut(s) 4, 1115
PspPI GGNCC 1 cut(s) 152
RsaI GTAC 3 cut(s) 238, 262, 488
RsaNI GTAC 3 cut(s) 237, 261, 487
RseI CAYNNNNRTG 2 cut(s) 272, 324
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 8 cut(s) 641, 671, 701, 716, 776, 806, 863, 866
Sau96I GGNCC 1 cut(s) 152
ScaI AGTACT 1 cut(s) 262
SchI GAGTC 2 cut(s) 550, 1082
ScrFI CCNGG 2 cut(s) 6, 1117
SduI GDGCHC 2 cut(s) 103, 381
SfaNI GCATC 2 cut(s) 340, 1055
SmiMI CAYNNNNRTG 2 cut(s) 272, 324
SsiI CCGC 4 cut(s) 291, 707, 812, 866
SspI AATATT 1 cut(s) 139
SspMI CTAG 3 cut(s) 324, 552, 569
StyD4I CCNGG 2 cut(s) 4, 1115
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 3 cut(s) 230, 260, 376
TatI WGTACW 1 cut(s) 260
TauI GCSGC 1 cut(s) 868
TfiI GAWTC 5 cut(s) 9, 451, 506, 535, 1028
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 1 cut(s) 381
TseFI GTSAC 2 cut(s) 29, 580
TseI GCWGC 7 cut(s) 640, 670, 700, 715, 775, 805, 862
Tsp45I GTSAC 2 cut(s) 29, 580
TspDTI ATGAA 1 cut(s) 308
TspGWI ACGGA 1 cut(s) 614
TspRI CASTG 1 cut(s) 381
VneI GTGCAC 1 cut(s) 99
VspI ATTAAT 1 cut(s) 248
XapI RAATTY 4 cut(s) 15, 547, 906, 986
XceI RCATGY 1 cut(s) 1063
XspI CTAG 3 cut(s) 324, 552, 569
ZrmI AGTACT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.